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73022 Commits (c71acf60c4b934f8c02fd3882bfbd19c52d428d0)

Author SHA1 Message Date
Raghav Gururajan d26a7a5e4b
gnu: Add tabbed.
* gnu/packages/suckless.scm (tabbed): New variable.
2021-08-06 08:26:56 -04:00
Sarah Morgensen dc151c8fb1
gnu: go-1.16: Update to 1.16.7.
* gnu/packages/golang.scm (go-1.16): Update to 1.16.7.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-08-06 08:15:02 -04:00
Lars-Dominik Braun 196f171c55
gnu: Add r-datasaurus.
* gnu/packages/statistics.scm (r-datasaurus): New variable.
2021-08-06 09:59:27 +02:00
Katherine Cox-Buday 0d72f24ac0
gnu: emacs-direnv: Patch the reference to direnv.
* gnu/packages/emacs-xyz.scm (emacs-direnv)
[phases]{patch-in-direnv}: New phase.

Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-08-06 00:39:51 -04:00
nee c64c49b152
gnu: yamagi-quake2: Patch dynamically loaded libraries.
* gnu/packages/games.scm (yamagi-quake2)
[arguments]{make-flags}: Remove the DLOPEN_OPENAL=no make flag, which was
not working as intended.
[phases]{patch-libraries}: New phase.

Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-08-06 00:00:02 -04:00
Pkill -9 f8f096d1e8
gnu: Add tetrinet.
* gnu/packages/games.scm (tetrinet): New variable.

Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-08-05 23:18:16 -04:00
Maxim Cournoyer 362a1cc3fb
gnu: restic: Have the custom check phase honor TESTS?.
* gnu/packages/backup.scm (restic)[phases]{check}: Honor TESTS?.
2021-08-05 22:56:49 -04:00
Sarah Morgensen 1273548f4f
gnu: restic: Patch tests for go-1.16.
* gnu/packages/patches/restic-0.9.6-fix-tests-for-go1.15.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/backup.scm (restic): Use it.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-08-05 22:56:49 -04:00
Sarah Morgensen 733ca63bcd
gnu: go-github-com-bmatcuk-doublestar: Remove test incompatible with go-1.16.
* gnu/packages/golang.scm (go-github-com-bmatcuk-doublestar)
[phases]{remove-incompatible-test}: New phase.

Co-authored-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-08-05 22:56:46 -04:00
Leo Famulari d0d3bcc615
gnu: linux-libre 4.4: Update to 4.4.278.
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.278.
(linux-libre-4.4-pristine-source): Update hash.
2021-07-27 12:34:58 -04:00
Leo Famulari 0d579938e8
gnu: linux-libre 4.9: Update to 4.9.278.
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.278.
(linux-libre-4.9-pristine-source): Update hash.
2021-07-27 12:34:57 -04:00
Leo Famulari d4be54a188
gnu: linux-libre 4.14: Update to 4.14.242.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.242.
(linux-libre-4.14-pristine-source): Update hash.
2021-07-27 12:34:57 -04:00
Leo Famulari f02bff795f
gnu: linux-libre 4.19: Update to 4.19.201.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.201.
(linux-libre-4.19-pristine-source): Update hash.
2021-07-27 12:34:57 -04:00
Leo Famulari 2606a33d00
gnu: linux-libre 5.4: Update to 5.4.138.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.138.
(linux-libre-5.4-pristine-source): Update hash.
2021-07-27 12:34:57 -04:00
Leo Famulari f4977a336d
gnu: linux-libre 5.10: Update to 5.10.56.
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.56.
(linux-libre-5.10-pristine-source): Update hash.
2021-07-27 12:34:57 -04:00
Leo Famulari 7399e0fde9
gnu: linux-libre: Update to 5.13.8.
* gnu/packages/linux.scm (linux-libre-5.13-version): Update to 5.13.8.
(linux-libre-5.13-pristine-source): Update hash.
2021-07-27 12:34:57 -04:00
Nicolas Goaziou 4be98fbe7e
gnu: crawl: Update to 0.27.0.
* gnu/packages/games.scm (crawl): Update to 0.27.0.
2021-08-05 22:38:21 +02:00
Nicolas Goaziou 447ce7d57e
gnu: tome4: Update to 1.7.4.
* gnu/packages/games.scm (tome4): Update to 1.7.4.
2021-08-05 22:27:13 +02:00
Felix Gruber 76d68744cc
gnu: audacious: Update to 4.1.
* gnu/packages/music.scm (audacious): Update to 4.1.
[inputs]: Replace libmodplug with libopenmpt.
[arguments]: Add --disable-gtk configure flag as building against GTK,
in addition to QT, has otherwise become the default.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-08-05 22:01:00 +02:00
Xinglu Chen fd3f1e8092
gnu: mcron: Update to 1.2.1.
* gnu/packages/guile-xyz.scm (mcron): Update to 1.2.1.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-08-05 13:00:02 -04:00
Ricardo Wurmus f1b64c435a
gnu: pigx-sars-cov2-ww: Update to 0.0.3.
* gnu/packages/bioinformatics.scm (pigx-sars-cov2-ww): Update to 0.0.3.
2021-08-05 16:46:34 +02:00
Lars-Dominik Braun 7e05fda6e8
gnu: pypy3: Use gdbm compat library and other small fixes.
* gnu/packages/python.scm (pypy3)[inputs]: Remove bash-minimal.
[phases]: Remove trailing #t.
{patch-source}: Use gdbm compat library.  Fix shell with the implicit Bash
input.
{build}: Use the '--allworkingmodules' argument.
{install}: Refactor for clarity.
[license]: Re-indent comments.

Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-08-05 10:29:59 -04:00
Maxim Cournoyer 49432f6534
gnu: pypy3: Update to 7.3.5.
The patch disabling tests is removed because it only fixes 2 out of 43 test
failures.

* gnu/packages/patches/pypy3-7.3.1-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
* gnu/packages/python.scm (pypy3): Update to 7.3.5.
[patches]: Remove patch.
2021-08-05 10:29:58 -04:00
Sarah Morgensen ead6cc03c6
gnu: go-1.16: Honor #:parallel-build?
* gnu/packages/golang.scm (go-1.16)[arguments]<#:phases>{build}: Honor
parallel-build?

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-05 16:54:13 +03:00
Sarah Morgensen 8cc36f76bb
gnu: earlyoom: Patch tests for go-1.16.
* gnu/packages/linux.scm (earlyoom)[source]: Add snippet to not use
modules in test suite.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-05 16:44:55 +03:00
Sarah Morgensen 457a472888
gnu: go-etcd-io-bbolt: Update to 1.3.6.
* gnu/packages/golang.scm (go-etcd-io-bbolt): Update to 1.3.6.
[propagated-inputs]: Add go-golang-org-x-sys.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-05 16:41:57 +03:00
Sarah Morgensen 4a72b9875a
gnu: go-gopkg-in-check-v1: Update to 1.0.0-20201130134442-10cb98267c6c.
* gnu/packages/golang.scm (go-gopkg-in-check-v1): Update to
1.0.0-20201130134442-10cb98267c6c.
[license]: Correct license.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-05 16:41:56 +03:00
Sarah Morgensen 759aa3f062
gnu: go-github-com-dlclark-regexp2: Update to 1.4.0.
* gnu/packages/golang.scm (go-github-com-dlclark-regexp2): Update to 1.4.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-05 16:41:55 +03:00
Sarah Morgensen 422b365e59
gnu: go-github-com-magiconair-properties: Update to 1.8.5.
* gnu/packages/golang.scm (go-github-com-magiconair-properties): Update to 1.8.5.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-05 16:41:54 +03:00
Sarah Morgensen dadb275ff8
gnu: go-github-com-masterminds-goutils: Update to 1.1.1.
* gnu/packages/golang.scm (go-github-com-masterminds-goutils): Update to 1.1.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-05 16:41:53 +03:00
Sarah Morgensen 26bca253b5
gnu: go-github-com-pelletier-go-toml: Update to 1.9.3.
* gnu/packages/golang.scm (go-github-com-pelletier-go-toml): Update to 1.9.3.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-05 16:41:52 +03:00
Sarah Morgensen ddff7c8b1b
gnu: go-github-com-sergi-go-diff: Update to 1.2.0.
* gnu/packages/golang.scm (go-github-com-sergi-go-diff): Update to 1.2.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-05 16:41:51 +03:00
Sarah Morgensen 174a43b928
gnu: go-go-uber-org-atomic: Update to 1.8.0.
* gnu/packages/golang.scm (go-go-uber-org-atomic): Update to 1.8.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-05 16:41:50 +03:00
Sarah Morgensen 11c265187d
gnu: go-github-com-puerkitobio-goquery: Update to 1.7.0.
* gnu/packages/golang.scm (go-github-com-puerkitobio-goquery): Update to 1.7.0.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-05 16:41:48 +03:00
Peng Mei Yu 7aab590ddd
gnu: ibus-rime: Update to 1.5.0.
* gnu/packages/ibus.scm (ibus-rime): Update to 1.5.0.
[build-system]: Change gnu-build-system to cmake-build-system.
[arguments]: Delete #:make-flags.  Add #:configure-flags.  Update
'patch-source phase.  Delete 'fix-file-names phase.  Revert deletion of
'configure phase.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-05 16:17:31 +03:00
Peng Mei Yu 9177895618
gnu: rime-data: Update to 0.38.20210802.
* gnu/packages/ibus.scm (rime-data): Update to 0.38.20210802.
[arguments]: Delete "no_update=1" from #:make-flags.  Adjust 'patch-source
phase.  Replace 'build phase.
[license]: Clarify license for all subpackages.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-05 16:17:29 +03:00
Peng Mei Yu 729cc11157
gnu: librime: Update to 1.7.3.
* gnu/packages/ibus.scm (librime): Update to 1.7.3.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-05 16:17:27 +03:00
Efraim Flashner 7f3ccc5bdb
gnu: julia: Fix building on aarch64-linux.
* gnu/packages/julia.scm (julia)[arguments]: Add phase on aarch64-linux
to skip linking to nonexistant libquadmath.
2021-08-05 15:51:06 +03:00
Pierre Langlois e914fc5913
gnu: Rename u-boot-sifive-fu540 to sifive-unleashed.
* gnu/packages/bootloaders.scm (u-boot-sifive-fu540): Rename to ...
(u-boot-sifive-unleashed): ... this.  Change board name from sifive_fu540 to
sifive_unleashed.
* gnu/packages/patches/u-boot-riscv64-fix-extlinux.patch: Rename sifive_fu540
to sifive_unleashed.
2021-08-05 13:42:50 +01:00
Pierre Langlois 781123518e
gnu: u-boot-vexpress: Remove package.
Upstream no longer supports the platform and we don't expect any users out
there, see <https://bugs.gnu.org/49552>.

* gnu/packages/bootloaders.scm (u-boot-vexpress): Remove variable.
2021-08-05 13:41:50 +01:00
Paul Garlick 64d4bc089e
gnu: Add optizelle.
* gnu/packages/maths.scm (optizelle): New variable.
2021-08-05 09:29:59 +01:00
Ben Sturmfels 79fa1fbe23
gnu: Remove python-fudge.
Remove unused dependency of previously removed fabric package.

* gnu/packages/python-xyz.scm (python-fudge): Remove variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-05 11:19:38 +03:00
Ben Sturmfels 28b6f9cadd
gnu: Remove python2-paramiko.
Remove unused dependency of previously removed fabric package.

* gnu/packages/python-crypto.scm (python2-paramiko): Remove variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-05 11:19:38 +03:00
Ben Sturmfels 1ee6166bd7
gnu: Remove python2-pynacl.
Remove unused dependency of previously removed fabric package.

* gnu/packages/python-crypto.scm (python2-pynacl): Remove variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-05 11:19:37 +03:00
Ben Sturmfels de83a236b9
gnu: Remove python2-bcrypt.
Remove unused dependency of previously removed fabric package.

* gnu/packages/python-crypto.scm (python2-bcrypt): Remove variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-05 11:19:36 +03:00
Ben Sturmfels c6a80baf01
gnu: Remove fabric.
Remove obsolete Python 2 package that fails to build.

* gnu/packages/admin.scm (fabric): Remove variable.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-05 11:19:33 +03:00
Xinglu Chen 517dacdb99
gnu: mit-scheme: Update to 11.2.
* gnu/packages/scheme.scm (mit-scheme): Update to 11.2.
[native-inputs]: Add ‘texlive-epsf’ to ‘telive-union’, and add ‘ghostscript’.
[inputs]: Add ‘ncurses’.  Replace the URL for i686 with the URL for aarch64.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-08-05 09:09:29 +02:00
Nicolas Goaziou 12aedf0015
gnu: endless-sky: Remove #t at the end of phase.
* gnu/packages/games.scm (endless-sky): Remove #t at the end of phase.  Fix
indentation.
2021-08-05 09:03:36 +02:00
Timotej Lazar 6f248b947f
gnu: endless-sky: Enable tests.
* gnu/packages/games.scm (endless-sky)[arguments]: Enable tests.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-08-05 09:02:59 +02:00
Timotej Lazar fd85c59d1e
gnu: endless-sky: Clean up phases.
* gnu/packages/games.scm (endless-sky)[arguments]: Drop unused substitution
and merge existing phases into 'fix-paths.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-08-05 09:02:29 +02:00
Timotej Lazar 79eb05f84f
gnu: endless-sky: Update to 0.9.14.
* gnu/packages/games.scm (endless-sky): Update to 0.9.14.
[arguments]: Add 'use-gcc-ar phase to support LTO used by the new version.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-08-05 09:01:58 +02:00
Simon South 8b4a654ab9
gnu: knot-resolver: Update to 5.4.0.
* gnu/packages/dns.scm (knot-resolver): Update to 5.4.0.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-07-27 12:34:59 -04:00
Michael Rohleder 9d5ddf5f37
gnu: lesspipe: Update to 1.86.
* gnu/packages/less.scm (lesspipe): Update to 1.86.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-07-27 12:34:59 -04:00
Michael Rohleder 9a8f0ff683
gnu: mousepad: Update to 0.5.6.
* gnu/packages/xfce.scm (mousepad): Update to 0.5.6.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-07-27 12:34:56 -04:00
Nicolas Goaziou 454ce9e0dc
gnu: emacs-elpher: Update to 3.2.2.
* gnu/packages/emacs-xyz.scm (emacs-elpher): Update to 3.2.2.
2021-08-05 00:43:29 +02:00
Nicolas Goaziou b4e73c691c
gnu: emacs-lua-mode: Update to 20210802.
* gnu/packages/emacs-xyz.scm (emacs-lua-mode): Update to 20210802.
2021-08-05 00:42:23 +02:00
Nicolas Goaziou 0dcdc82981
gnu: emacs-so-long: Update to 1.1.
* gnu/packages/emacs-xyz.scm (emacs-so-long): Update to 1.1.
2021-08-05 00:40:26 +02:00
Nicolas Goaziou 47a7b9d5e4
gnu: flare-game: Update to 1.12.
* gnu/packages/games.scm (flare-game): Update to 1.12.
(flare-engine): Update to 1.12.
2021-08-05 00:36:11 +02:00
Nicolas Goaziou 5d8c2b742c
gnu: nushell: Update to 0.35.0.
* gnu/packages/shells.scm (nushell):
(rust-nu-ansi-term-0.35):
(rust-nu-cli-0.35):
(rust-nu-command-0.35):
(rust-nu-completion-0.35):
(rust-nu-data-0.35):
(rust-nu-engine-0.35):
(rust-nu-errors-0.35):
(rust-nu-json-0.35):
(rust-nu-parser-0.35):
(rust-nu-path-0.35):
(rust-nu-plugin-0.35):
(rust-nu-plugin-binaryview-0.35):
(rust-nu-plugin-chart-0.35):
(rust-nu-plugin-fetch-0.35):
(rust-nu-plugin-from-bson-0.35):
(rust-nu-plugin-from-sqlite-0.35):
(rust-nu-plugin-inc-0.35):
(rust-nu-plugin-match-0.35):
(rust-nu-plugin-post-0.35):
(rust-nu-plugin-ps-0.35):
(rust-nu-plugin-query-json-0.35):
(rust-nu-plugin-s3-0.35):
(rust-nu-plugin-selector-0.35):
(rust-nu-plugin-start-0.35):
(rust-nu-plugin-sys-0.35):
(rust-nu-plugin-textview-0.35):
(rust-nu-plugin-to-bson-0.35):
(rust-nu-plugin-to-sqlite-0.35):
(rust-nu-plugin-tree-0.35):
(rust-nu-plugin-xpath-0.35):
(rust-nu-pretty-hex-0.35):
(rust-nu-protocol-0.35):
(rust-nu-source-0.35):
(rust-nu-stream-0.35):
(rust-nu-table-0.35):
(rust-nu-test-support-0.35):
(rust-nu-value-ext-0.35): Update to 0.35.0.
2021-08-04 20:45:39 +02:00
Nicolas Goaziou 3f3d84616c
gnu: rust-md-5-0.9: Update to 0.9.1.
* gnu/packages/crates-io.scm (rust-md-5-0.9): Update to 0.9.1.
2021-08-04 20:45:39 +02:00
Nicolas Goaziou 142a02988e
gnu: Add rust-chrono-humanize-0.2.
* gnu/packages/crates-io.scm (rust-chrono-humanize-0.2): New variable.
2021-08-04 20:45:39 +02:00
Ludovic Courtès a537ef5e0c
gnu: python-pytorch: Remove leftover comment.
* gnu/packages/machine-learning.scm (python-pytorch)[arguments]: Remove
leftover comment.
2021-08-04 18:03:28 +02:00
Xinglu Chen dfb154e6d0
gnu: Add emacs-geiser-chez.
* gnu/packages/emacs-xyz.scm (emacs-geiser-chez): New variable.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-08-04 11:29:00 -04:00
Milkey Mouse 62722229c2
gnu: Fix broken links to Arch Linux git repositories
* gnu/packages/crypto.scm (libsecp256k1): Update comment patch link.
* gnu/packages/engineering.scm (freehdl): Update patch link.
* gnu/packages/tex.scm (texlive-bin): Update arch-patch base URL.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-08-04 17:22:19 +02:00
Ludovic Courtès f44fe1d5bf
gnu: Add python-clang.
* gnu/packages/llvm.scm (clang-python-bindings): New procedure.
(python-clang-10, python-clang-11, python-clang-12): New variables.
2021-08-04 17:22:19 +02:00
Ludovic Courtès dd55ad7ff8
gnu: Add python-pytorch.
* gnu/packages/machine-learning.scm (python-pytorch): New variable.
* gnu/packages/patches/python-pytorch-runpath.patch,
gnu/packages/patches/python-pytorch-system-libraries.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2021-08-04 17:22:19 +02:00
Ludovic Courtès 38d319d38a
gnu: gemmlowp: Add "generic" variant.
* gnu/packages/machine-learning.scm (gemmlowp): New variable, based on
'gemmlowp-for-tensorflow'.
(gemmlowp-for-tensorflow): Rewrite to inherit from GEMMLOWP.
[properties]: New field.
2021-08-04 17:22:19 +02:00
Ludovic Courtès c83d7d68f3
gnu: gloo: Honor #:tests? in 'check' phase.
* gnu/packages/machine-learning.scm (gloo)[arguments]: In 'check' phase,
honor #:tests?.
2021-08-04 17:22:19 +02:00
Ludovic Courtès 36f7e1d783
gnu: gloo: Update to c22a5cf.
* gnu/packages/machine-learning.scm (gloo): Update to c22a5cf.
[inputs]: New field.
2021-08-04 17:22:19 +02:00
Ludovic Courtès 9b80df58d0
gnu: Add python-peachpy.
* gnu/packages/python-xyz.scm (python-peachpy): New variable.
2021-08-04 17:22:18 +02:00
Ludovic Courtès 14428aa07f
gnu: Add python-opcodes.
* gnu/packages/python-xyz.scm (python-opcodes): New variable.
2021-08-04 17:22:18 +02:00
Ricardo Wurmus 48542e03cf
gnu: Add python-azure-storage-nspkg.
* gnu/packages/python-web.scm (python-azure-storage-nspkg): New variable.
2021-08-04 17:11:52 +02:00
Ricardo Wurmus 1c3d7000a7
gnu: Add python-azure-nspkg.
* gnu/packages/python-web.scm (python-azure-nspkg): New variable.
2021-08-04 17:11:45 +02:00
Ricardo Wurmus d648037edc
gnu: ocaml-biniou: Simplify "make-writable" phase.
* gnu/packages/ocaml.scm (ocaml-biniou)[arguments]: Simplify phase.
2021-08-04 17:08:31 +02:00
Ricardo Wurmus 1aceb93a6f
gnu: r-ldblock: Update to 1.22.1.
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.22.1.
2021-08-04 16:21:17 +02:00
Ricardo Wurmus 5909dd9e8e
gnu: r-roc: Update to 1.68.1.
* gnu/packages/bioconductor.scm (r-roc): Update to 1.68.1.
2021-08-04 16:21:16 +02:00
Ricardo Wurmus b94c750e01
gnu: r-mixomics: Update to 6.16.3.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.16.3.
2021-08-04 16:21:16 +02:00
Ricardo Wurmus 6da8e99c9c
gnu: r-gosemsim: Update to 2.18.1.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.18.1.
2021-08-04 16:21:12 +02:00
Ricardo Wurmus 00cdff9e6e
gnu: r-maldiquant: Update to 1.20.
* gnu/packages/cran.scm (r-maldiquant): Update to 1.20.
[native-inputs]: Add r-knitr.
2021-08-04 15:55:01 +02:00
Ricardo Wurmus 9139a5cbb2
gnu: r-iml: Update to 0.10.1.
* gnu/packages/cran.scm (r-iml): Update to 0.10.1.
[propagated-inputs]: Remove r-gridextra; add r-keras.
2021-08-04 15:55:01 +02:00
Ricardo Wurmus a21fd29763
gnu: r-tuner: Update to 1.3.3.1.
* gnu/packages/cran.scm (r-tuner): Update to 1.3.3.1.
2021-08-04 15:55:01 +02:00
Ricardo Wurmus 36d82a325e
gnu: r-ggplotify: Update to 0.0.8.
* gnu/packages/cran.scm (r-ggplotify): Update to 0.0.8.
2021-08-04 15:55:01 +02:00
Ricardo Wurmus ab14e917fe
gnu: r-rcppannoy: Update to 0.0.19.
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.19.
2021-08-04 15:55:00 +02:00
Ricardo Wurmus b28d6cb773
gnu: r-tab: Update to 5.1.1.
* gnu/packages/cran.scm (r-tab): Update to 5.1.1.
[propagated-inputs]: Remove r-gee, r-survival, and r-xtable; add r-kableextra.
[native-inputs]: Add r-knitr.
2021-08-04 15:55:00 +02:00
Ricardo Wurmus dd3ec26daa
gnu: r-rbibutils: Update to 2.2.2.
* gnu/packages/cran.scm (r-rbibutils): Update to 2.2.2.
2021-08-04 15:55:00 +02:00
Ricardo Wurmus e3f766324c
gnu: r-haven: Update to 2.4.3.
* gnu/packages/cran.scm (r-haven): Update to 2.4.3.
[source]: Simplify snippet.
[synopsis]: Remove quotes.
[description]: Fix typo and remove one word.
2021-08-04 15:55:00 +02:00
Ricardo Wurmus 2705572eb5
gnu: r-ggpmisc: Update to 0.4.2.
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.4.2.
[propagated-inputs]: Remove r-glue, r-gridextra, r-stringr, r-xts, and r-zoo.
2021-08-04 15:55:00 +02:00
Ricardo Wurmus 851fa07575
gnu: r-ggpp: Update to 0.4.2.
* gnu/packages/cran.scm (r-ggpp): Update to 0.4.2.
2021-08-04 15:55:00 +02:00
Ricardo Wurmus 2f2ef63141
gnu: Add r-keras.
* gnu/packages/cran.scm (r-keras): New variable.
2021-08-04 15:55:00 +02:00
Ricardo Wurmus 3a104c5f9d
gnu: Add r-tensorflow.
* gnu/packages/cran.scm (r-tensorflow): New variable.
2021-08-04 15:55:00 +02:00
Ricardo Wurmus e9357f126f
gnu: Add r-tfruns.
* gnu/packages/cran.scm (r-tfruns): New variable.
2021-08-04 15:54:55 +02:00
Leo Prikler 047d792d14
gnu: python2-renpy: Update to 7.4.8.
* gnu/packages/game-development.scm (python2-renpy): Update to 7.4.8.
2021-08-04 15:44:09 +02:00
Leo Prikler 6c2d39a0fc
gnu: python-pygame-sdl2: Update to renpy-version 7.4.8.
* gnu/packages/game-development.scm (python-pygame-sdl2): Update to
renpy-version 7.4.8.
2021-08-04 15:44:09 +02:00
Dmitry Polyakov 2e0ddc74f6
gnu: Add instead.
* gnu/packages/game-development.scm (instead): New variable.
* gnu/packages/patches/instead-use-games-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it here.
2021-08-04 15:44:09 +02:00
Efraim Flashner a4c456c80c
gnu: ldb: Update to 2.4.0.
* gnu/packages/samba.scm (ldb): Update to 2.4.0.
2021-08-04 16:34:32 +03:00
Efraim Flashner a34f36b06c
gnu: talloc: Update to 2.3.3.
* gnu/packages/samba.scm (talloc): Update to 2.3.3.
2021-08-04 16:34:32 +03:00
Efraim Flashner ff477f6571
gnu: tdb: Update to 1.4.5.
* gnu/packages/databases.scm (tdb): Update to 1.4.5.
2021-08-04 16:34:32 +03:00
Efraim Flashner f71b381d1f
gnu: samba: Update to 4.13.10.
* gnu/packages/samba.scm (samba): Update to 4.13.10.
[source]: Remove patch.
* gnu/packages/patches/samba-fix-fcntl-hint-detection.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-08-04 16:34:32 +03:00
Efraim Flashner 7aad3dea66
gnu: tevent: Update to 0.11.0.
* gnu/packages/samba.scm (tevent): Update to 0.11.0.
[native-inputs]: Add cmocka.
2021-08-04 16:34:32 +03:00
Efraim Flashner bc38598c8e
gnu: mpg123: Update to 1.28.2.
* gnu/packages/mp3.scm (mpg123): Update to 1.28.2.
2021-08-04 16:34:31 +03:00
Efraim Flashner a715e93a09
gnu: tuir: Respect #:tests?.
* gnu/packages/syndication.scm (tuir)[arguments]: Adjust custom 'check
phase to skip tests when requested.
2021-08-04 15:15:57 +03:00
Ricardo Wurmus 75ec0fa243
gnu: Add r-tximeta.
* gnu/packages/bioconductor.scm (r-tximeta): New variable.
2021-08-04 13:04:04 +02:00
Simon South 567922b9b5
gnu: emacs-elpher: Update to 3.2.1.
* gnu/packages/emacs-xyz.scm (emacs-elpher): Update to 3.2.1.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-08-04 12:19:56 +02:00
Nicolas Goaziou d84b2cce5d
gnu: emacs-pyim: Update to 3.9.4.
* gnu/packages/emacs-xyz.scm (emacs-pyim): Update to 3.9.4.
2021-08-04 12:18:11 +02:00
Nicolas Goaziou 8a9ded775e
gnu: emacs-znc: Update to 0.4.
* gnu/packages/emacs-xyz.scm (emacs-znc): Update to 0.4.
[source]: Use Github source location instead of Marmalade.
2021-08-04 12:14:53 +02:00
Efraim Flashner dc4c830a37
gnu: Add rust-boomphf-0.5.
* gnu/packages/crates-io.scm (rust-boomphf-0.5): New variable.
2021-08-04 12:22:39 +03:00
Efraim Flashner 3bb2afefb6
gnu: Add rust-wyhash-0.5.
* gnu/packages/crates-io.scm (rust-wyhash-0.5): New variable.
2021-08-04 12:22:39 +03:00
Efraim Flashner 9df10aaf3a
gnu: Add rust-succinct-0.5.
* gnu/packages/crates-io.scm (rust-succinct-0.5): New variable.
2021-08-04 12:22:39 +03:00
Efraim Flashner 951a4f9980
gnu: Add rust-quick-csv-0.1.
* gnu/packages/crates-io.scm (rust-quick-csv-0.1): New variable.
2021-08-04 12:22:38 +03:00
Efraim Flashner 06e679a964
gnu: Add rust-gfa-0.10.
* gnu/packages/crates-io.scm (rust-gfa-0.10): New variable.
(rust-gfa-0.6): Inherit from rust-gfa-0.10.
2021-08-04 12:22:38 +03:00
Ricardo Wurmus c1e4110971
gnu: Add tensorflow-lite.
* gnu/packages/machine-learning.scm (tensorflow-lite): New variable.
2021-08-04 11:09:05 +02:00
Ricardo Wurmus aaae45b1f4
gnu: flatbuffers: Update to 2.0.0.
* gnu/packages/serialization.scm (flatbuffers): Update to 2.0.0.
[source]: Fetch sources from git.
[arguments]: Make git checkout writable; Enable building shared library.
2021-08-04 11:09:05 +02:00
Ricardo Wurmus eaf2111dbc
gnu: Add eigen-for-tensorflow-lite.
* gnu/packages/algebra.scm (eigen-for-tensorflow-lite): New variable.
2021-08-04 11:09:01 +02:00
Xinglu Chen 0cb26784fa
gnu: mercurial: Update to 5.8.1.
* gnu/packages/version-control (mercurial): Update to 5.8.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-04 11:30:31 +03:00
Kyle Meyer 3b43665666
gnu: git-annex: Update to 8.20210803.
* gnu/packages/haskell-apps.scm (git-annex): Update to 8.20210803.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-04 11:05:54 +03:00
Guix Together d3ede451cf
gnu: Add bitwise.
* gnu/packages/maths.scm (bitwise): New variable.

Co-authored-by: jgart <jgart@dismail.de>
Co-authored-by: Julien Lepiller <julien@lepiller.eu>
Co-authored-by: Ryan Prior <rprior@protonmail.com>
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-04 10:56:07 +03:00
Xinglu Chen e7d32b4bcc
gnu: fetchmail: Update to 6.4.20 [fixes CVE-2021-38386].
* gnu/packages/mail.scm (fetchmail): Update to 6.4.20.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-04 10:45:16 +03:00
Efraim Flashner 1914d24b45
gnu: gprolog: Update to 1.5.0.
* gnu/packages/prolog.scm (gprolog): Update to 1.5.0.
[arguments]: Rename custom 'change-dir-n-fix-shells to 'change-dir and
remove substitution.
2021-08-04 10:41:26 +03:00
Arun Isaac 5bf675cdaf
gnu: Add nncp.
* gnu/packages/uucp.scm (nncp): New variable.
2021-08-04 11:24:31 +05:30
Brice Waegeneire 92605326ae
services: guix: Use "match-record" in activation.
It's more explicit to specify used fields instead of depending on their
position.

* gnu/services/base.scm (guix-activation): Replace "match" with
  "match-record".
2021-08-04 06:36:50 +02:00
Maxim Cournoyer d0cc63ccc5
gnu: dehydrated: Follow up commit to 77e2df870b.
* gnu/packages/tls.scm (dehydrated): Remove bogus, nested native-search-paths.
2021-08-03 16:12:59 -04:00
Tobias Geerinckx-Rice 77e2df870b
gnu: dehydrated: Declare cURL's native search paths.
* gnu/packages/tls.scm (dehydrated)[native-search-paths]: Use curl's.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-08-03 15:47:06 -04:00
Tobias Geerinckx-Rice c40516a567
gnu: Add scanbd.
* gnu/packages/scanner.scm (scanbd): New public variable.

Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-08-03 15:14:14 -04:00
Maxim Cournoyer 448de3966e
gnu: zchunk: Patch references to the 'zstd' command line tool.
Fixes https://issues.guix.gnu.org/49795.

* gnu/packages/compression.scm (zchunk)
[phases]{patch-paths}: New phase.
[inputs]: Add zstd.
[propagated-inputs]: Relabel the zstd "lib" as "zstd:lib".

Reported-by: Christopher Howard <christopher@librehacker.com>
2021-08-03 14:32:01 -04:00
Ricardo Wurmus 69a4494af9
gnu: Add python-xxhash.
* gnu/packages/digest.scm (python-xxhash): New variable.
2021-08-03 10:43:08 +02:00
Ricardo Wurmus 2ab5d08fbe
gnu: Add r-spectre.
* gnu/packages/bioinformatics.scm (r-spectre): New variable.
2021-08-03 10:43:08 +02:00
Ricardo Wurmus 138a0f8ed6
gnu: Add r-rgeos.
* gnu/packages/cran.scm (r-rgeos): New variable.
2021-08-03 10:43:08 +02:00
Ricardo Wurmus 424515f9d0
gnu: Add r-qs.
* gnu/packages/cran.scm (r-qs): New variable.
2021-08-03 10:43:08 +02:00
Ricardo Wurmus e19a9eda25
gnu: Add r-rapiserialize.
* gnu/packages/cran.scm (r-rapiserialize): New variable.
2021-08-03 10:43:08 +02:00
Ricardo Wurmus 419315d4e6
gnu: Add r-stringfish.
* gnu/packages/cran.scm (r-stringfish): New variable.
2021-08-03 10:43:08 +02:00
Ricardo Wurmus eb632a28db
gnu: Add r-exactextractr.
* gnu/packages/cran.scm (r-exactextractr): New variable.
2021-08-03 10:43:08 +02:00
Maxim Cournoyer 10f554700c
Reinstate "services: Add a service for Jami."
This reverts commit 4673f81793, which reverted
commit 69dcc24c9f with the fix detailed below.

Thanks to Christopher Baines for reporting the failure and proposing a fix.

* guix/self.scm (compiled-guix) [*system-test-modules*]: Add the test data
files via the 'extra-files' argument.
* gnu/local.mk (dist_patch_DATA): Move the tests/data/jami-dummy-account.dat
file to...
* gnu/local.mk (MODULES_NOT_COMPILED): ... here.
2021-08-02 17:23:30 -04:00
Leo Famulari 0ae0d8b4ce
gnu: RawTherapee: Use HTTPS URLs.
* gnu/packages/photo.scm (rawtherapee)[source, home-page]: Use HTTPS URLs.
2021-07-27 12:34:57 -04:00
Maxim Cournoyer 4673f81793
Revert "services: Add a service for Jami."
This reverts commit 69dcc24c9f.  It broke 'guix
pull'.
2021-08-02 15:48:59 -04:00
Maxim Cournoyer 69dcc24c9f
services: Add a service for Jami.
* gnu/services/telephony.scm (string-or-computed-file?)
(string-list?, account-fingerprint-list?): New procedures.
(maybe-string-list, maybe-account-fingerprint-list)
(maybe-boolean, maybe-string, jami-account-list): New configuration field
types.
(serialize-string-list, serialize-boolean, serialize-string)
(jami-account, jami-account->alist, jami-configuration)
(jami-account-list?, jami-account-list-maybe): New procedures.
(%jami-accounts): New variable.
(jami-configuration->command-line-arguments): New procedure.
(jami-dbus-session-activation, jami-shepherd-services): New procedures.
(jami-service-type): New variable.
* gnu/build/jami-service.scm: New file.
* gnu/tests/data/jami-dummy-account.dat: Likewise.
* gnu/tests/telephony.scm: Likewise.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register them.
* Makefile.am (SCM_TESTS): Register the test file.
(dist_patch_DATA): Register the new data file.
* doc/guix.texi (Telephony Services): Document it.
2021-08-02 15:15:02 -04:00
Xinglu Chen 8e1f944218
services: configuration: Derive the default value from the package variable.
If the type of a configuration field is a package, show the name of its
package *variable* as the default value.

* gnu/services/configuration.scm (generate-documentation){show-default}
{package->symbol}: New nested procedures.  Use them to format the field
entries.

Co-authored-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-08-02 14:16:23 -04:00
Xinglu Chen ad945029a2
services: configuration: Uniformize the generated documentation.
Make the formatting of the generated docs more consistent with the rest of the
docs in the “Services” section of the manual.

* gnu/services/configuration (generate-documentation): Represent the data type
documentation of a field using a DEFTP table rather than DEFTYPEVR elements.

Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-08-02 14:16:22 -04:00
Maxim Cournoyer 5b2b834269
build: shepherd: Use autoload to lazily bind Shepherd modules.
Instead of imperative module-autoload! directives.

* gnu/build/shepherd.scm: Replace module-autoload! directives by autoload
arguments for define-module.
2021-08-02 14:16:22 -04:00
Morgan Smith f12a35cfa2
gnu: qutebrowser: Update to 2.3.1.
* gnu/packages/web-browsers.scm (qutebrowser): Update to 2.3.1.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-02 19:34:55 +03:00
Ludovic Courtès 6da2b35b60
gnu: Add onnx-optimizer.
* gnu/packages/machine-learning.scm (onnx-optimizer): New variable.
* gnu/packages/patches/onnx-optimizer-system-library.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-08-02 18:11:33 +02:00
Efraim Flashner bcde6cdaf2
gnu: zfs: Update source URI.
* gnu/packages/file-systems.scm (zfs)[source]: Update to new upstream URI.
2021-08-02 18:54:13 +03:00
raid5atemyhomework via Bug reports for GNU Guix cff43aa2fd
gnu: zfs: Update 2.1.0.
* gnu/packages/file-systems.scm (zfs): Update to 2.1.0.
[arguments]: Adjust 'patch-source phase to add support for new
compatibility feature.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-08-02 18:49:49 +03:00
Pierre Langlois eb46c6c5c8
gnu: u-boot: Update to 2021.07.
* gnu/packages/patches/u-boot-sifive-prevent-reloc-initrd-fdt.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/bootloaders.scm (%u-boot-sifive-prevent-relocating-initrd-fdt):
New variable.
(u-boot): Update to 2021.07.
[native-inputs]: Add python-pycryptodomex.
(u-boot-2021.07): Delete variable.
(u-boot-tools)[arguments]: Adapt 'patch phase, disable failing test_spl test.
(u-boot-sifive-unmatched): Use default u-boot package.
(u-boot-pinebook-pro-rk3328): Use default u-boot package.
2021-08-02 13:23:32 +01:00
Marius Bakke 536bec1ce5
gnu: zathura: Update to 0.4.8.
* gnu/packages/pdf.scm (zathura): Update to 0.4.8.
2021-08-01 23:19:29 +02:00
Marius Bakke 4a8a184278
gnu: girara: Update to 0.3.6.
* gnu/packages/gtk.scm (girara): Update to 0.3.6.
2021-08-01 23:19:29 +02:00
Marius Bakke be73c55ae5
gnu: sbcl-cl-libxml2: Remove duplicate input.
* gnu/packages/lisp-xyz.scm (sbcl-cl-libxml2)[native-inputs]: Remove SBCL-LIFT.
2021-08-01 23:19:29 +02:00
Marius Bakke 5c121be1f9
gnu: python-django: Update to 3.2.5 [fixes CVE-2021-35042].
* gnu/packages/django.scm (python-django): Update to 3.2.5.
2021-08-01 23:19:29 +02:00
Marius Bakke 3e5e10d51b
gnu: mg: Update to 20210609.
* gnu/packages/text-editors.scm (mg): Update to 20210609.
[source](snippet): Remove trailing #t.
2021-08-01 23:19:29 +02:00
Nicolas Goaziou 6e99e113e6
gnu: emacs-ts: Update to 0.2.2.
* gnu/packages/emacs-xyz.scm (emacs-ts): Update to 0.2.2.
2021-08-01 20:57:47 +02:00
Nicolas Goaziou c044940a67
gnu: emacs-magit: Update to 3.2.0.
* gnu/packages/emacs-xyz.scm (emacs-magit): Update to 3.2.0.
2021-08-01 20:56:05 +02:00