0b2c883828
gnu: Add hdf5-blosc.
...
* gnu/packages/maths.scm (hdf5-blosc): New variable.
2020-04-28 12:23:28 +02:00
6ca2d7dae0
gnu: maths: dune-*: Update to version 2.7
...
* gnu/packages/maths.scm (dune-*): Update to version 2.7.
(dune-uggrid)[source] Download from Git, as no release tarball for
version 2.7 exists.
(dune-alugrid,dune-subgrid,dune-pdelab)[source] Use commit hashes as no
tags for version 2.7 exist (yet?).
(dune-istl)[source](patches) Add patch required to build version 2.7
without openmpi.
* gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-22 19:23:58 +02:00
9b3c231e3c
gnu: libqalculate: Fix libcurl gnutls CA cert bundle file.
...
* gnu/packages/patches/libqalculate-3.8.0-libcurl-ssl-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (libqalculate)[source]: Use it.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-04-20 20:05:09 +02:00
48b0d9c071
gnu: dune-subgrid: Fix grammar of "allows to mark" to "marks".
...
* gnu/packages/maths (dune-subgrid): Fix grammar.
2020-04-12 13:34:56 -07:00
67e2e1718c
gnu: libqalculate: Fix spelling of "uncertainty".
...
* gnu/packages/maths (libqalculate): Fix typo.
2020-04-12 12:03:37 -07:00
b60e2d480a
gnu: Add dsfmt.
...
* gnu/packages/maths.scm (dsfmt): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-04-07 17:31:55 +03:00
525e83ec83
gnu: scotch: Make some inputs native.
...
* gnu/packages/math.scm (scotch)[inputs]: Move flex & bison from here...
[native-inputs]: ...to this new field.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-04-04 20:19:03 +02:00
72c71d2497
gnu: Add qalculate-gtk.
...
* gnu/packages/maths.scm (qalculate-gtk): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-03 16:26:38 +02:00
70c98efaf6
gnu: Add libqalculate.
...
* gnu/packages/maths.scm (libqalculate): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-03 16:26:38 +02:00
8b87d095b3
gnu: z3: Fix build determinism.
...
* gnu/packages/maths.scm (z3)[arguments]: Add a phase to set
PYTHONHASHSEED=0.
2020-03-29 20:35:33 +02:00
53b9df20c1
gnu: Remove more packages deprecated for over almost a year.
...
* gnu/packages/games.scm (armagetron-advanced)
(cataclysm-dark-days-ahead, gnubackgammon, l-abbaye-des-morts)
(the-battle-for-wesnoth, the-battle-for-wesnoth-server)
(project-starfighter, kiki-the-nano-bot, fish-fillets-ng)
(dungeon-crawl-stone-soup): Let's forget this ever happened.
* gnu/packages/emacs-xyz.scm (geiser, paredit, git-modes/old-name)
(magit, magit-svn, haskell-mode, emacs-emms-player-mpv, bbdb)
(ert-runner, groovy-emacs-modes): Remove variable.
* gnu/packages/engineering.scm (emacs-emms-player-simple-mpv)
(emacs-evil-ediff, emacs-evil-mu4e, emacs-wgrep-helm, ao): Likewise.
* gnu/packages/finance.scm (monero-core): Likewise.
* gnu/packages/gnome.scm (dungeon-crawl-stone-soup-tiles)
(tales-of-maj-eyal, battle-tanks, the-legend-of-edgar)
(gnome-tweak-tool): Likewise.
* gnu/packages/gnuzilla.scm (conkeror): Likewise.
* gnu/packages/guile-xyz.scm (mcron2): Likewise.
* gnu/packages/image.scm (pngcrunch): Likewise.
* gnu/packages/linux.scm (eudev-with-hwdb): Likewise.
* gnu/packages/maths.scm (qtoctave): Likewise.
* gnu/packages/package-management.scm (guile2.0-guix): Likewise.
* gnu/packages/php.scm (php-with-bcmath): Likewise.
* gnu/packages/python-xyz.scm (python-kivy-next, python2-kivy-next):
Likewise.
* gnu/packages/video.scm (livestreamer): Likewise.
* gnu/packages/virtualization.scm (lookingglass): Likewise.
* gnu/packages/vulkan.scm (vulkan-icd-loader): Likewise.
* gnu/packages/syndication.scm (newsbeuter): Likewise.
(newsboat)[description]: Remove historical footnote.
2020-03-29 18:40:56 +02:00
c2cf286c62
Update email address and Savannah handle for Amin Bandali.
...
* .mailmap, gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm,
gnu/packages/fonts.scm, gnu/packages/fpga.scm, gnu/packages/lean.scm,
gnu/packages/maths.scm, gnu/packages/pulseaudio.scm: Update my email address.
* build-aux/git-authenticate.scm: Update my Savannah handle.
2020-03-28 16:30:07 -04:00
255fb17b25
gnu: armadillo: Fix typo in description.
...
* gnu/packages/maths.scm (armadillo): Fix spaces after "eg.".
2020-03-28 21:27:33 +01:00
6607aad53c
gnu: wxmaxima: Update to 20.03.1.
...
* gnu/packages/maths.scm (wxmaxima): Update to 20.03.1.
2020-03-22 19:22:42 -04:00
2aaa09f17d
gnu: hdf-eos2: Use HTTPS home page.
...
* gnu/packages/maths.scm (hdf-eos2)[home-page]: Use HTTPS.
2020-03-21 03:09:51 +01:00
d3be522036
gnu: openlibm: Use HTTPS home page.
...
* gnu/packages/maths.scm (openlibm)[home-page]: Use HTTPS.
2020-03-14 22:01:40 +01:00
6ceb771657
gnu: define dune-*-openmpi packages
...
* gnu/packages/maths.scm (dune-common-openmpi, dune-geometry-openmpi,
dune-istl-openmpi, dune-typetree-openmpi, dune-uggrid-openmpi,
dune-grid-openmpi, dune-alugrid-openmpi, dune-subgrid-openmpi,
dune-localfunctions-openmpi, dune-functions-openmpi,
dune-pdelab-openmpi): New variables.
(add-openmpi-to-dune-package): New function to add openmpi to the
inputs of a dune-* package and replace all dune-* packages in its
input with the corresponding dune-*-openmpi package.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-14 17:54:34 +01:00
393dc1cc0b
gnu: dune-*: remove openmpi dependency
...
* gnu/packages/maths.scm (dune-*)[inputs]: Remove openmpi dependency.
[arguments]: remove code to setup openmpi for tests.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-14 17:54:34 +01:00
b471337dea
gnu: suitesparse: Build with cmake-minimal.
...
* gnu/packages/maths.scm (suitesparse)[native-inputs]: Change from CMAKE to
CMAKE-MINIMAL.
2020-03-14 11:55:33 +01:00
0a703c0486
gnu: dune-istl: Build with suitesparse
...
* gnu/packages/maths.scm (dune-istl)[inputs]: Add suitesparse to build
additional solvers in dune-istl.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-12 11:52:38 +01:00
f1f9466e33
gnu: Add dune-subgrid
...
* gnu/packages/maths.scm (dune-subgrid): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-12 11:52:38 +01:00
07ebb75d17
gnu: Add dune-uggrid.
...
* gnu/packages/maths.scm (dune-uggrid): New variable.
(dune-grid)[propagated-inputs]: Add dune-uggrid dependency, so
that the UGGrid class in dune-grid can be used by packages that
have dune-grid as input.
(dune-functions)[arguments]: Enable tests that previously weren't
built as they require dune-uggrid.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-12 11:52:38 +01:00
a669f6e27b
gnu: dune-*: set up MPI for tests
...
* gnu/packages/maths.scm (dune-common, dune-grid, dune-istl,
dune-alugrid): [arguments]: correctly set up MPI instead of disabling
tests that require MPI.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-12 11:52:38 +01:00
80fafdba1c
gnu: speedcrunch: Use HTTPS home page.
...
* gnu/packages/maths.scm (speedcrunch)[home-page]: Use HTTPS.
2020-03-09 16:01:18 +01:00
5969598149
gnu: openblas: Use HTTPS home page.
...
* gnu/packages/maths.scm (openblas)[home-page]: Use HTTPS.
2020-03-07 12:48:18 +01:00
1d3c6a31b5
gnu: wxmaxima: Update to 20.02.4.
...
* gnu/packages/maths.scm (wxmaxima): Update to 20.02.4.
[arguments]: Enable tests and set #:test-target to "test".
[native-inputs]: Add xorg-server-for-tests.
2020-03-06 15:04:34 -05:00
aac148a87b
gnu: SuiteSparse: Update to 5.7.1.
...
* gnu/packages/maths.scm (suitesparse): Update to 5.7.1.
[source]: The latest releases of SuiteSparse have only been published on GitHub.
Fetch from git tag as GitHub releases page only contains autogenerated tarballs
that guix lint complains about. Apply new patch for Mongoose's CMakeList.txt to
find SuiteSparse_config.
[arguments]: Add CMake flags used by new components GraphBLAS and Mongoose.
[native-inputs]: Add CMake and m4 needed to build GraphBLAS and Mongoose.
* gnu/packages/patches/suitesparse-mongoose-cmake.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-04 18:08:13 -05:00
f6b4d395fd
gnu: z3: Build the Python bindings
...
* gnu/packages/maths.scm (z3)[arguments]: Add the --python and
--pypkgdir flags to configure. To facilitate the latter, add
(guix build python-build-system) to #:modules and #:imported-modules.
2020-02-23 17:58:38 +01:00
b457f3cc16
gnu: Add vinci.
...
* gnu/packages/maths.scm (vinci): New variable.
2020-02-21 13:30:25 +01:00
8a0dd289c5
gnu: octave, octave-cli: Update to 5.2.0.
...
* gnu/packages/maths.scm (octave, octave-cli): Update to 5.2.0.
[inputs]: Add bdb.
2020-02-10 14:43:06 -05:00
aa2e83cce2
gnu: superlu-dist: Update to 6.2.0.
...
* gnu/packages/maths.scm (superlu-dist): Update to 6.2.0.
[source]: Update upstream url. Remove mpi deprecations patch.
* gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-01-31 09:17:16 -06:00
48fe5c36a2
gnu: superlu: Update upstream url.
...
* gnu/packages/maths.scm (superlu)[source,home-page]: Update url.
2020-01-31 09:13:57 -06:00
48446f0f94
gnu: wxmaxima: Update to 20.01.3.
...
* gnu/packages/maths.scm (wxmaxima): Update to 20.01.3.
[home-page]: Update URL.
2020-01-23 14:22:41 -05:00
1e05e837c7
gnu: elemental: Update home page.
...
* gnu/packages/maths.scm (elemental)[home-page]: Use repository home
page.
2020-01-19 17:57:09 +01:00
2299d83e2f
gnu: petsc: Use HTTPS home page.
...
* gnu/packages/maths.scm (petsc)[home-page, license]: Use HTTPS.
2020-01-19 06:09:02 +01:00
0a44f9c4e4
gnu: Use HTTPS for www.hdfgroup.org.
...
* gnu/packages/maths.scm (hdf5)[home-page, license]: Use HTTPS.
(hdf-java, h5check)[source]: Likewise.
2020-01-17 23:32:34 +01:00
821aa687b4
gnu: netcdf: Use HTTPS home page.
...
* gnu/packages/maths.scm (netcdf)[home-page]: Use HTTPS.
2020-01-17 23:32:34 +01:00
d5730000e2
gnu: scotch: Use HTTPS home page.
...
* gnu/packages/maths.scm (scotch)[home-page]: Use HTTPS.
2020-01-17 23:32:34 +01:00
a3143063ae
Update email address for Amin Bandali.
...
* .mailmap: Add name and email addresses for Amin Bandali.
* gnu/local.mk, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm,
gnu/packages/fpga.scm, gnu/packages/lean.scm, gnu/packages/maths.scm:
Update email address for Amin Bandali.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2020-01-17 18:30:33 +01:00
09bad3cd42
gnu: python-slepc4py: Update to 3.11.0.
...
* gnu/packages/maths.scm (python-slepc4py): Update to 3.11.0.
2020-01-14 17:24:11 +00:00
f1cc312e15
gnu: python-petsc4py: Update to 3.11.0.
...
* gnu/packages/maths.scm (python-petsc4py): Update to 3.11.0.
2020-01-14 17:23:50 +00:00
cb169aae81
gnu: hdf5@1.10: Update to 1.10.6.
...
* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.6.
2020-01-10 23:47:28 +01:00
e6de152dc1
gnu: lapack: Update to 3.9.0.
...
* gnu/packages/maths.scm (lapack): Update to 3.9.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-01-07 12:25:09 +01:00
94fea21b21
gnu: hdf5@1.10: Update to 1.10.5.
...
* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.5. Remove
"hdf5-mpi-deprecations.patch".
* gnu/packages/patches/hdf5-mpi-deprecations.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
2019-12-13 18:04:04 +01:00
0ffc2d537d
gnu: Add lrslib.
...
* gnu/packages/maths.scm (lrslib): New variable.
2019-12-06 22:56:02 +01:00
33b59c1a3e
Merge branch 'staging'
2019-12-04 20:12:41 +01:00
dbef037ff4
gnu: z3: Update to 4.8.7.
...
* gnu/packages/maths.scm (z3): Update to 4.8.7.
2019-12-01 00:49:15 +01:00
1ff64c503a
gnu: nauty: Update to 2.6r12.
...
* gnu/packages/maths.scm (nauty): Update to 2.6r12.
2019-12-01 00:49:14 +01:00
0897ad7fac
Merge branch 'master' into staging
2019-11-28 00:38:25 +01:00
f3640e7395
gnu: Remove obsolete import of R build system module.
...
* gnu/packages/maths.scm: Remove import of (guix build-system r).
2019-11-27 18:29:32 +01:00
Ricardo Wurmus
Felix Gruber
R Veera Kumar
Vagrant Cascadian
Nicolò Balzarotti
Vincent Legoll
Jakub Kądziołka
Tobias Geerinckx-Rice
Amin Bandali
Nicolas Goaziou
Kei Kebreau
Marius Bakke
Andreas Enge
Eric Bavier
Paul Garlick
Konrad Hinsen
Ludovic Courtès