215b49a881
gnu: openmpi: Have 'mpirun' look for executables under $prefix.
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* gnu/packages/mpi.scm (openmpi)[arguments]: Add
"--enable-mpirun-prefix-by-default" to #:configure-flags.
2020-09-24 17:53:01 +02:00
b96f4f0995
gnu: openmpi: Update to 4.0.5.
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* gnu/packages/mpi.scm (openmpi): Update to 4.0.5.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-17 16:18:00 +02:00
06efbe2fba
gnu: hwloc@2: Update to 2.2.0.
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* gnu/packages/mpi.scm (hwloc-2): Update to 2.2.0.
2020-03-31 14:55:42 +02:00
8db4e704dc
gnu: hwloc@2: Skip test that fails on emulated hardware.
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Works around <https://bugs.gnu.org/40342 >.
* gnu/packages/mpi.scm (hwloc-2)[arguments]: Add
'skip-test-that-fails-on-qemu' phase.
2020-03-31 14:55:42 +02:00
f9a69e9bae
gnu: openmpi: Use HTTPS home page.
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* gnu/packages/mpi.scm (openmpi)[home-page]: Use HTTPS.
2020-03-10 22:02:19 +01:00
9dd7082c48
gnu: openmpi: Update to 4.0.3.
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* gnu/packages/mpi.scm (openmpi): Update to 4.0.3.
2020-03-10 22:02:19 +01:00
15e62623cc
gnu: mpi.scm: Use 'license:' prefix.
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* gnu/packages/mpi.scm: Import (guix licenses) with the 'license:'
prefix.
2020-02-17 20:53:16 +02:00
c70261bfb9
gnu: Add MPICH.
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* gnu/packages/mpi.scm (mpich): New variable.
Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2020-02-17 18:22:06 +01:00
9b65dea806
gnu: Use the two-element 'define-deprecated' form where applicable.
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* gnu/packages/guile.scm (guile-json): Use the two-element
'define-deprecated' form.
* gnu/packages/kde.scm (kdevplatform): Likewise.
* gnu/packages/mpi.scm (hwloc-2.0): Likewise.
* gnu/packages/qt.scm (qt): Likewise.
2020-01-12 00:19:09 +01:00
2d6f68aa3b
gnu: intel-mpi-benchmarks: Merge with "imb-openmpi".
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* gnu/packages/mpi.scm (intel-mpi-benchmarks): Remove.
* gnu/packages/benchmark.scm (imb): Rename to...
(intel-mpi-benchmarks): ... this. Change 'name'. Update to 2019.3.
[arguments]: Remove 'build phase. Rewrite 'install phase. Pass
#:parallel-build? and #:make-flags.
(intel-mpi-benchmarks/openmpi): New variable.
(imb-openmpi): Rewrite in terms of 'deprecated-package'.
2019-12-20 22:35:12 +01:00
68ac34e120
gnu: openmpi: Increase priority of the PSM component.
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* gnu/packages/patches/openmpi-psm2-priority.patch: Rename to...
* gnu/packages/patches/openmpi-mtl-priorities.patch: ... this. Add hunk
to change the priority of PSM.
* gnu/packages/mpi.scm (openmpi)[source]: Adjust accordingly.
* gnu/local.mk (dist_patch_DATA): Likewise.
2019-11-29 15:54:19 +01:00
0d8a8234b5
gnu: hwloc: Adjust references to 'hwloc'.
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This is a followup to 8ec7ca22d3
2019-11-19 11:32:48 +01:00
8ec7ca22d3
gnu: hwloc: Default to 2.x.
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* gnu/packages/mpi.scm (hwloc): Rename to...
(hwloc-1): ... this.
(hwloc-2): Adjust 'inherit' clause accordingly.
(hwloc): New variable.
2019-11-19 10:51:53 +01:00
b1077c2234
gnu: openmpi: Silence UCX warnings when running tests.
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* gnu/packages/mpi.scm (%openmpi-setup): Set "UCX_LOG_LEVEL".
2019-11-16 17:43:49 +01:00
6f160c5c38
Revert "gnu: openmpi: Pass explicit "--with-*" configure flags."
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This reverts commit eaa52b5baa
2019-11-15 23:28:17 +01:00
96a469f1cd
gnu: openmpi: Fix typo.
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* gnu/packages/mpi.scm (openmpi)[inputs]: For UCX, check the supported
systems of UCX, not PSM2.
2019-11-15 23:28:17 +01:00
faab7082ab
gnu: openmpi: Raise the priority of the PSM2 component.
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This allows us to get better performance by default on machines with
OmniPath hardware.
* gnu/packages/patches/openmpi-psm2-priority.patch: New file.
* gnu/packages/mpi.scm (openmpi)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2019-11-15 17:52:45 +01:00
58a536bb1b
gnu: openmpi, slurm: Switch to hwloc 2.x.
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* gnu/packages/mpi.scm (openmpi)[inputs]: Switch to HWLOC-2.
* gnu/packages/parallel.scm (slurm)[inputs]: Likewise.
2019-11-15 17:52:45 +01:00
8c8e108978
gnu: hwloc: Update to 2.1.0.
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* gnu/packages/mpi.scm (hwloc-2.0): Rename to...
(hwloc-2): ... this. Update to 2.1.0
(hwloc-2.0): Define as deprecated.
* gnu/packages/opencl.scm (pocl)[inputs]: Adjust accordingly.
2019-11-15 17:52:45 +01:00
c1ea4c0793
gnu: Add Intel MPI Benchmarks.
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* gnu/packages/mpi.scm (intel-mpi-benchmarks): New variable.
2019-11-15 17:52:44 +01:00
eaa52b5baa
gnu: openmpi: Pass explicit "--with-*" configure flags.
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* gnu/packages/mpi.scm (openmpi)[arguments]: Pass "--with-ucx",
"--with-psm", and "--with-psm2".
2019-11-15 17:52:44 +01:00
fe39020011
gnu: python-mpi4py: Update to 3.0.3.
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* gnu/packages/mpi.scm (python-mpi4py): Update to 3.0.3.
2019-11-08 23:11:01 +01:00
8ba94edd8f
gnu: openmpi: Add dependency on UCX when supported.
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* gnu/packages/mpi.scm (openmpi)[inputs]: Add UCX conditionally.
2019-10-15 13:58:45 +02:00
8f02e5ac81
gnu: openmpi: Update to 4.0.2.
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* gnu/packages/mpi.scm (openmpi): Update to 4.0.2.
2019-10-10 17:23:52 +02:00
97149c5767
gnu: Adjust uses of C{,PLUS}_INCLUDE_PATH for GCC 7.
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These variables are no longer set in the build environment by default. GCC
still respects these search paths and treats them as "system headers" so we
can continue to use them, just not expect them to be available.
* gnu/packages/mpi.scm (openmpi)[arguments]: Do not attempt to read from
C_INCLUDE_PATH, nor CPLUS_INCLUDE_PATH.
* gnu/packages/games.scm (kiki)[arguments]: Likewise.
* gnu/packages/networking.scm (hcxtools)[arguments]: Likewise.
* gnu/packages/synergy.scm (synergy)[arguments]: Likewise.
* gnu/packages/bioinformatics.scm (gemma, sailfish)[arguments]: Likewise.
* gnu/packages/maths.scm (dune-alugrid)[arguments]: Likewise.
2019-07-14 18:13:34 +02:00
2c12be76cd
gnu: python-mpi4py: Update to 3.0.2.
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* gnu/packages/mpi.scm (python-mpi4py): Update to 3.0.2.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-06-21 09:04:37 +02:00
6e36c6ed8f
gnu: openmpi: Update to .
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* gnu/packages/mpi.scm (openmpi): Update to .
mpi
openmpi
2019-04-16 00:05:04 +02:00
fa5a253866
gnu: Add java-openmpi.
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* gnu/packages/mpi.scm (java-openmpi): New variable.
2019-03-18 18:24:45 +01:00
5cfed7efc8
gnu: openmpi: Let configure enable PSM based on inputs.
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This fixes OpenMPI builds on systems not supported by the PSM packages.
* gnu/packages/mpi.scm (openmpi)[arguments]: Remove '--enable-psm' and
'--enable-psm2' from #:configure-flags.
2019-02-20 22:18:45 -06:00
b49c8b9ef8
gnu: python-mpi4py: Update to 3.0.1.
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* gnu/packages/mpi.scm (python-mpi4py): Update to 3.0.1.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-02-18 21:41:12 +01:00
e9823f9ca3
gnu: openmpi: Add InfiniBand support.
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* gnu/packages/mpi.scm (openmpi)[inputs]: Add opensm.
[arguments]: Add openib configure flags; add build phase
"find-opensm-headers".
2019-02-17 09:59:46 +01:00
41313acebf
gnu: openmpi: Upgrade to 4.0.0.
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* gnu/packages/linux.scm (psm)[arguments]: Add 'patch-sysmacros phase to fix
"undefined reference to `minor'" errors while linking against
libinfinipath.so.
* gnu/packages/mpi.scm (openmpi): Upgrade to 4.0.0.
[inputs]: Add libevent.
[arguments]: Simplify configure-flags. Use system libevent. Adjust romio
version strings.
(%openmpi-setup): Use OMPI_MCA_rmaps_base_mapping_policy for oversubscription.
2019-02-09 00:50:16 -06:00
b07712bfb1
gnu: openmpi: Add dependency on SLURM.
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This allows users to run Open MPI programs with 'srun'.
* gnu/packages/mpi.scm (openmpi)[inputs]: Add SLURM.
[arguments]: Add "--with-pmi" to #:configure-flags.
2019-02-07 15:46:45 +01:00
cb85742fa8
gnu: hwloc: Update to 2.0.3.
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* gnu/packages/mpi.scm (hwloc-2.0): Update to 2.0.3.
2019-01-31 20:57:22 +01:00
9dd5084589
gnu: hwloc@1: Update to 1.11.12.
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* gnu/packages/mpi.scm (hwloc): Update to 1.11.12.
2019-01-31 20:57:22 +01:00
54fcd547b3
gnu: Add python-mpi4py.
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* gnu/packages/mpi.scm (python-mpi4py): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-14 21:34:08 +01:00
b9b53fb4ff
gnu: hwloc: Update to 2.0.2.
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* gnu/packages/mpi.scm (hwloc): Update to 2.0.2.
2018-10-04 21:28:24 +02:00
bbe46a4af5
mpi: Factorize openmpi setup build phase.
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* gnu/packages/mpi.scm (%openmpi-setup): New variable.
* gnu/packages/maths.scm (scalapack, slepc-openmpi, mumps-openmpi)
(superlu-dist, p4est, petsc-openmpi, hypre-openmpi, elemental)
(sundials-openmpi, arpack-ng-openmpi)[arguments]: Use it in #:phases.
2018-09-11 20:29:04 -05:00
fbe1b85b63
gnu: openmpi: Add PSM2 (Intel OmniPath) support.
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* gnu/packages/mpi.scm (openmpi)[inputs]: Add PSM2 on supported systems.
2018-05-25 13:43:03 +02:00
a560641a60
gnu: openmpi: Reintroduce PSM (Intel TrueScale) support.
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Fixes a regression introduced in
9129804230
2018-05-25 13:43:03 +02:00
6df2a50ac4
gnu: openmpi: Update to 3.0.1.
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* gnu/packages/mpi.scm (openmpi): Update to 3.0.1.
[arguments]: In 'remove-absolute' phase, adjust romio file name.
* gnu/packages/maths.scm (scalapack)[arguments]: Add
'set-test-environment' phase.
(slepc-openmpi)[arguments]: Likewise.
(mumps-openmpi)[arguments]: Likewise.
(superlu-dist)[arguments]: In 'check' phase, set
'OMPI_MCA_plm_rsh_agent'.
(scotch)[arguments]: In 'build-esmumps', likewise.
(p4est)[arguments]: Add 'set-test-environment' phase.
(hypre-openmpi)[arguments]: Likewise.
2018-05-25 13:43:03 +02:00
10de06bd07
gnu: hwloc: Skip 'linux-libnuma' test.
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That test would fail on some machines, for instance build machines
behind berlin.guixsd.org.
* gnu/packages/mpi.scm (hwloc)[arguments]: Add 'skip-linux-libnuma-test'
phase.
(hwloc-2.0)[arguments]: Replace it.
2018-04-10 17:44:27 +02:00
323991339e
gnu: hwloc@1: Update to 1.11.10.
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* gnu/packages/mpi.scm (hwloc): Update to 1.11.10.
2018-03-26 18:24:55 +02:00
d2c036557a
gnu: hwloc@2: Update to 2.0.1.
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* gnu/packages/mpi.scm (hwloc-2.0): Update to 2.0.1.
[source]: Remove 'patches'.
* gnu/packages/patches/hwloc-tests-without-sysfs.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2018-03-26 18:24:55 +02:00
ce5964074a
gnu: hwloc@1: Update to 1.11.9.
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* gnu/packages/mpi.scm (hwloc): Update to 1.11.9.
2018-03-26 00:15:52 +02:00
71e789319c
gnu: hwloc: Add 2.0.0.
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* gnu/packages/mpi.scm (hwloc-2.0): New variable.
* gnu/packages/patches/hwloc-tests-without-sysfs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2018-02-06 17:34:34 +01:00
9129804230
gnu: psm: Only use as an input on supported-systems.
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Syntax help supplied by bavier@member.fsf.org
* gnu/packages/linux.scm (libfabric)[inputs]: Only use psm as an input
on systems where psm is supported.
* gnu/packages/mpi.scm (openmpi)[inputs]: Same.
2017-11-07 20:41:08 +02:00
f4433d09a1
gnu: openmpi: Add dependency on PSM.
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* gnu/packages/mpi.scm (openmpi)[inputs]: Add PSM.
2017-11-07 18:09:13 +01:00
c971d9ef29
gnu: openmpi: Add "debug" output.
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This is necessary for one mechanism for attaching parallel debuggers
and is also relevant for the runtime backtrace facility.
* gnu/packages/mpi.scm (openmpi)[outputs]: New field.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-10-03 17:11:19 +02:00
b08952f1bb
gnu: openmpi: Configure without builtin atomics.
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See https://www.mail-archive.com/users@lists.open-mpi.org//msg31400.html
* gnu/packages/mpi.scm (openmpi)[arguments]: Don't configure with
--enable-builtin-atomics.
Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2017-09-12 14:56:59 +02:00
Ludovic Courtès
Greg Hogan
Tobias Geerinckx-Rice
Efraim Flashner
Maurice Brémond
Ludovic Courtès
Marius Bakke
Paul Garlick
Ricardo Wurmus
Eric Bavier
Eric Bavier
Dave Love