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51625 Commits (d4145638631f2ebe94fa93fef326da83dd85732b)

Author SHA1 Message Date
Ludovic Courtès 9e3f9ac3c0
substitute: 'http-multiple-get' no longer drops requests above 1,000.
Previously, in the unlikely case 'http-multiple-get' was passed more
than 1,000 requests, it could have dropped all those above 1,000.

* guix/scripts/substitute.scm (http-multiple-get): Define 'batch'.  Use
that for the 'write-request' loop.  Add 'processed' parameter to 'loop'
and use that to compute the remaining requests and call 'connect' in the
recursion base case.
2019-11-28 13:30:53 +01:00
Ludovic Courtès 295c6a7e83
doc: Handle right arrows in 'syntax-highlighted-html'.
* doc/build.scm (syntax-highlighted-html)[build](entity->string): Add "rarr".
2019-11-28 13:30:53 +01:00
Efraim Flashner e8c6644af1
lint: Check for more packages which should be native.
* guix/lint.scm (check-inputs-should-be-native): Add yasm, nasm, fasm.
2019-11-28 12:30:42 +02:00
Efraim Flashner 4632e7c787
gnu: avidemux: Clean up inputs.
* gnu/packages/video.scm (avidemux)[inputs]: Remove sdl. Move perl,
python-wrapper, qttools, yasm ...
[native-inputs]: ... to here.
[arguments]: Remove references to sdl.
2019-11-28 12:30:42 +02:00
Efraim Flashner 3c526173dd
gnu: snorenotify: Update inputs.
* gnu/packages/kde.scm (snorenotify)[inputs]: Move extra-cmake-modules,
qttools ...
[native-inputs]: ... to here.
2019-11-28 12:30:41 +02:00
Efraim Flashner 3e68e7d2b6
gnu: gparted: Satisfy 'guix lint'.
* gnu/packages/disk.scm (gparted)[inputs]: Move itstool ...
[native-inputs]: ... to here.
2019-11-28 12:30:41 +02:00
Ricardo Wurmus 18a5575ec5
gnu: r-e1071: Update to 1.7-3.
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-3.
2019-11-28 10:03:20 +01:00
Ricardo Wurmus ba54cb61ec
gnu: r-rmarkdown: Update to 1.18.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.18.
2019-11-28 10:03:20 +01:00
Ricardo Wurmus bf5b792b0e
gnu: r-matrix: Update to 1.2-18.
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-18.
2019-11-28 10:03:20 +01:00
Ricardo Wurmus 6fdf3d5d99
gnu: r-igraph: Update to 1.2.4.2.
* gnu/packages/graph.scm (r-igraph): Update to 1.2.4.2.
2019-11-28 10:03:20 +01:00
Ricardo Wurmus 28d940961c
gnu: r-rgdal: Update to 1.4-8.
* gnu/packages/cran.scm (r-rgdal): Update to 1.4-8.
2019-11-28 10:03:20 +01:00
Ricardo Wurmus 7b18e6d000
gnu: r-covr: Update to 3.4.0.
* gnu/packages/cran.scm (r-covr): Update to 3.4.0.
2019-11-28 10:03:20 +01:00
Ricardo Wurmus 7dcd823978
gnu: r-kohonen: Update to 3.0.10.
* gnu/packages/cran.scm (r-kohonen): Update to 3.0.10.
[propagated-inputs]: Remove r-mass.
2019-11-28 10:03:20 +01:00
Ricardo Wurmus bb180e8a7a
gnu: r-grimport2: Update to 0.2-0.
* gnu/packages/cran.scm (r-grimport2): Update to 0.2-0.
2019-11-28 10:03:19 +01:00
Ricardo Wurmus e2448b4b14
gnu: r-grimport: Update to 0.9-3.
* gnu/packages/cran.scm (r-grimport): Update to 0.9-3.
2019-11-28 10:03:19 +01:00
Ricardo Wurmus 04c3fd85ea
gnu: r-rnifti: Update to 1.0.1.
* gnu/packages/cran.scm (r-rnifti): Update to 1.0.1.
2019-11-28 10:03:19 +01:00
Ricardo Wurmus ad6ab1a881
gnu: r-emmeans: Update to 1.4.3.
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.3.
2019-11-28 10:03:19 +01:00
Ricardo Wurmus fda807da90
gnu: r-writexl: Update to 1.2.
* gnu/packages/cran.scm (r-writexl): Update to 1.2.
2019-11-28 10:03:19 +01:00
Ricardo Wurmus efec58e7ff
gnu: r-factominer: Update to 2.0.
* gnu/packages/cran.scm (r-factominer): Update to 2.0.
[propagated-inputs]: Add r-ggplot2 and ggrepel.
2019-11-28 10:03:19 +01:00
Oleg Pykhalov 37515553b5
gnu: tome4: Update to 1.6.4.
* gnu/packages/games.scm (tome4): Update to 1.6.4.
2019-11-28 08:55:43 +03:00
Leo Famulari 7297ebb287
gnu: Blender: Update to 2.81.
* gnu/packages/graphics.scm (blender): Update to 2.81.
[inputs]: Add libxi, libxrender, and tbb.
2019-11-27 21:58:45 -05:00
Marius Bakke 0897ad7fac
Merge branch 'master' into staging 2019-11-28 00:38:25 +01:00
Pierre Langlois 9943d238e9
gnu: feh: Adapt tests for imlib2 1.6.
* gnu/packages/patches/feh-fix-tests-for-imlib2-1.6.patch: New file.
* gnu/packages/image-viewers.scm (feh)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-11-28 00:33:49 +01:00
Marius Bakke ba5ef9997b
gnu: python-dbus: Update to 1.2.14.
* gnu/packages/python-xyz.scm (python-dbus): Update to 1.2.14.
(python2-dbus)[arguments]: Remove.
2019-11-28 00:33:48 +01:00
Marius Bakke e1695f4d58
gnu: whois: Update to 5.5.3.
* gnu/packages/networking.scm (whois): Update to 5.5.3.
2019-11-28 00:33:48 +01:00
Marius Bakke fd5ccec796
gnu: bubblewrap: Update to 0.4.0.
* gnu/packages/virtualization.scm (bubblewrap): Update to 0.4.0.
2019-11-28 00:33:48 +01:00
Marius Bakke 546c9fa660
gnu: bubblewrap: Update home page.
* gnu/packages/virtualization.scm (bubblewrap)[source, home-page]: Follow
redirect to.
2019-11-28 00:33:48 +01:00
Marius Bakke 164d0ad352
gnu: python-xapian-bindings: Sphinx is a native input.
* gnu/packages/search.scm (python-xapian-bindings)[inputs]: Remove
PYTHON-SPHINX.
[native-inputs]: New field.
2019-11-28 00:33:48 +01:00
Marius Bakke 7b5a120730
gnu: xapian: Update to 1.4.14.
* gnu/packages/search.scm (xapian, python-xapian-bindings): Update to 1.4.14.
2019-11-28 00:33:48 +01:00
Marius Bakke 60392114ae
gnu: notmuch: Update to 0.29.3.
* gnu/packages/mail.scm (notmuch): Update to 0.29.3.
2019-11-28 00:33:47 +01:00
Marius Bakke 38ae96e9c5
gnu: xorg-server: Update to 1.20.6.
* gnu/packages/xorg.scm (xorg-server): Update to 1.20.6.
(xorg-server-for-tests): Stay on 1.20.5.
2019-11-28 00:33:47 +01:00
Marius Bakke ff3375251d
gnu: Use the test-only Xorg variant for tests.
* gnu/packages/education.scm (gcompris-qt)[native-inputs]: Change XORG-SERVER
to XORG-SERVER-FOR-TESTS.
* gnu/packages/engineering.scm (pcb, qucs, openscad)[native-inputs]: Likewise.
* gnu/packages/gnome.scm (libbonoboui, d-feet, gspell, libdazzle, libhandy)[native-inputs]: Likewise.
* gnu/packages/gnupg.scm (parcimonie)[native-inputs]: Likewise.
* gnu/packages/graphics.scm (opensubdiv, rapicorn)[native-inputs]: Likewise.
* gnu/packages/gtk.scm (gtksourceview-2, gtksourceview)[native-inputs]: Likewise.
* gnu/packages/image-processing.scm (opencv)[native-inputs]: Likewise.
* gnu/packages/kde-frameworks.scm (kconfig, kcoreaddons, kwidgetsaddons,
kwindowsystem, kdeclarative)[native-inputs]: Likewise.
* gnu/packages/kde-plasma.scm (kscreenlocker)[native-inputs]: Likewise.
* gnu/packages/messaging.scm (gajim)[native-inputs]: Likewise.
* gnu/packages/python-xyz.scm (python-seaborn)[native-inputs]: Likewise.
2019-11-28 00:33:47 +01:00
Marius Bakke 6d460e80d1
gnu: Qt: Update to 5.12.6 LTS.
* gnu/packages/qt.scm (qtbase, qtsvg, qtimageformats, qtx11extras,
qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors,
qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel,
qtwebglplugin, qtwebview, qtlocation, qttools, qtscript, qtquickcontrols,
qtquickcontrols2, qtgraphicaleffects, qtgamepad, qtscxml, qtpurchasing,
qtcanvas3d, qtcharts, qtdatavis3d, qtnetworkauth, qtremoteobjects, qtspeech):
Update to 5.12.6.
2019-11-27 19:40:13 +01:00
Marius Bakke f0de36cba7
gnu: qtbase: Restore compatibility with old kernels.
* gnu/packages/qt.scm (qtbase)[arguments]: Add 'no-feature-renameat2' to the
configure flags.
2019-11-27 19:40:13 +01:00
Marius Bakke a59e2dd8cd
gnu: qtbase: Use absolute references in .prl files.
This fixes <https://bugs.gnu.org/38405>.

* gnu/packages/qt.scm (qtbase)[arguments]: Add phase 'patch-prl-files'.
2019-11-27 19:40:13 +01:00
Ricardo Wurmus dcc7fad001
gnu: r-txtplot: Move to (gnu packages cran).
* gnu/packages/statistics.scm (r-txtplot): Move from here...
* gnu/packages/cran.scm (r-txtplot): ...to here.
2019-11-27 18:36:39 +01:00
Ricardo Wurmus f3640e7395
gnu: Remove obsolete import of R build system module.
* gnu/packages/maths.scm: Remove import of (guix build-system r).
2019-11-27 18:29:32 +01:00
zimoun ef7944b94f
gnu: r-subplex: Move to (gnu packages cran).
* gnu/packages/maths.scm (r-subplex): Move from here...
* gnu/packages/cran.scm (r-subplex): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-11-27 18:15:34 +01:00
zimoun 682768deb0
gnu: r-pracma: Move to (gnu packages cran).
* gnu/packages/maths.scm (r-pracma): Move from here...
* gnu/packages/cran.scm (r-pracma): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-11-27 18:15:34 +01:00
zimoun 9bd56b1a77
gnu: r-desolve: Move to (gnu packages cran).
* gnu/packages/maths.scm (r-desolve): Move from here...
* gnu/packages/cran.scm (r-desolve): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-11-27 18:15:34 +01:00
zimoun 0eb59d9eac
gnu: r-quadprog: Move to (gnu packages cran).
* gnu/packages/maths.scm (r-quadprog): Move from here...
* gnu/packages/cran.scm (r-quadprog): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-11-27 18:15:34 +01:00
Pierre Neidhardt f678cc9c79
gnu: Add glib-with-documentation.
* gnu/packages/glib.scm (glib-with-documentation): New variable.
(glib)[properties]: Hide package.
2019-11-27 13:34:22 +01:00
Efraim Flashner 255bb7be0a
gnu: denemo: Move some inputs to native-inputs.
* gnu/packages/music.scm (denemo)[inputs]: Move intltool, gtk-doc,
libtool ...
[native-inputs]: .. to here.
2019-11-27 11:33:57 +02:00
Ricardo Wurmus a132276537
gnu: python-seaborn: Disable matrix test.
* gnu/packages/python-xyz.scm (python-seaborn)[arguments]: Add phase
"fix-tests".
2019-11-27 09:58:28 +01:00
Ricardo Wurmus 9e7cb2f1e1
gnu: python-matplotlib: Update to 3.1.2.
* gnu/packages/python-xyz.scm (python-matplotlib): Update to 3.1.2.
[arguments]: Disable test_backend_webagg and test_constrainedlayout; skip
other tests tagged with "webagg".
2019-11-27 09:58:28 +01:00
Ricardo Wurmus f9bd82e7a6
gnu: python-seaborn: Add patch to fix tests.
* gnu/packages/python-xyz.scm (python-seaborn)[source]: Add upstream patch to
fix test failures.
2019-11-27 09:58:28 +01:00
Ludovic Courtès fbecb5cddb
daemon: 'deletePath' uses 'statx' when available.
* nix/libutil/util.cc (_deletePath) [HAVE_STATX]: Use 'statx'.
2019-11-27 00:03:03 +01:00
Ludovic Courtès 7738a72186
daemon: GC remove-unused-links phase uses 'statx' when available.
* config-daemon.ac: Check for 'statx'.
* nix/libstore/gc.cc (LocalStore::removeUnusedLinks) [HAVE_STATX]: Use
'statx' instead of 'lstat'.
2019-11-27 00:03:03 +01:00
Ludovic Courtès 434138e2f2
substitute: Make '%allow-unauthenticated-substitutes?' public.
* guix/scripts/substitute.scm (warn-about-missing-authentication): New
procedure.
(%allow-unauthenticated-substitutes?): Turn into a public parameter and
use 'warn-about-missing-authentication'.
(valid-narinfo?): Adjust accordingly.
* tests/substitute.scm (call-with-narinfo): Likewise.
2019-11-27 00:03:03 +01:00
Ludovic Courtès 7f3bbfaf8e
ui: Adjust SRFI-34 exception handling to Guile 2.9.5.
* guix/ui.scm (report-load-error, warn-about-load-error)
(read/eval): Match (or 'srfi-34 '%exception) instead of just 'srfi-34 to
match what Guile 2.9.5 does.
2019-11-27 00:03:03 +01:00