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Author SHA1 Message Date
Ricardo Wurmus 0e9bde0048
gnu: r-diffcyt: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-diffcyt): Update to 1.24.0.

Change-Id: Ib7c5cf3735f78eb183ce4dc17307ad863d16c010
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 2d5d0ab72f
gnu: r-dexseq: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.50.0.

Change-Id: I5b695996799b23aeebf0545346264e3b02cf3ec5
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 4c5c6b070e
gnu: r-deseq2: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.44.0.

Change-Id: I7108fee1c2bf927a43d339ee5640d4a1bed6a2f4
2024-05-08 12:53:22 +02:00
Ricardo Wurmus b30d4d1cc8
gnu: r-complexheatmap: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.20.0.

Change-Id: I9b557819bac13ba00ee86dd43709c4e1b7517cde
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 1de2a99743
gnu: r-chipseq: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.54.0.

Change-Id: If80fc00811bd2707cbba97a64c2efe46848a8b60
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 0298c87534
gnu: r-chipseeker: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.40.0.

Change-Id: I6eb05f4da33610aa1ecb90ea75470bda1c184f0a
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 0b92bb1f1e
gnu: r-category: Update to 2.70.0.
* gnu/packages/bioconductor.scm (r-category): Update to 2.70.0.

Change-Id: Ia102f873af5883aeba3379366953cecdec2be342
2024-05-08 12:53:22 +02:00
Ricardo Wurmus e6032ad668
gnu: r-bsgenome: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.72.0.

Change-Id: Id0855145e079e607ab915ef9076c637059c81fd8
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 9a071ad941
gnu: r-biovizbase: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.52.0.

Change-Id: I71ac5375c00fadedc44c4f027b236648b3e2a4cd
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 472ed71761
gnu: r-biostrings: Update to 2.72.0.
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.72.0.

Change-Id: I7ddcf26e34210dd6065fdd8c937e68f256fee43e
2024-05-08 12:53:22 +02:00
Ricardo Wurmus 065b98f30d
gnu: r-biocparallel: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.38.0.

Change-Id: I943f443a0f6f3182c9f7fd11f57e1bfabb6c04df
2024-05-08 12:53:22 +02:00
Ricardo Wurmus cfddce9f42
gnu: r-biomart: Update to 2.60.0.
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.60.0.
[propagated-inputs]: Remove r-httr and r-xml; add r-httr2.

Change-Id: I6460b29e2a4d92be9e4675ddf461f65f79585449
2024-05-08 12:53:21 +02:00
Ricardo Wurmus a1d32a9206
gnu: r-biobase: Update to 2.64.0.
* gnu/packages/bioconductor.scm (r-biobase): Update to 2.64.0.

Change-Id: I5330e457bbabd007683ed869b539bd38a407df30
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 5970c028f0
gnu: r-bamsignals: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-bamsignals): Update to 1.36.0.

Change-Id: I99174b5d88723a8e6606cf067353f2051bab39d1
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 9b11dc5b0b
gnu: r-aroma-light: Update to 3.34.0.
* gnu/packages/bioconductor.scm (r-aroma-light): Update to 3.34.0.

Change-Id: I88f47a7143e875b60fea818bdb4d7b037345d055
2024-05-08 12:53:21 +02:00
Ricardo Wurmus c2a3f81a63
gnu: r-annotationhub: Update to 3.12.0.
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.12.0.
[propagated-inputs]: Remove r-interactivedisplaybase.

Change-Id: I849b7fcc5eea1cc48076b134fddda17bc8461973
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 5c889fbcfd
gnu: r-annotationforge: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.46.0.

Change-Id: Ieabb5d5d3f990d961014003d47eb5dd21656ebc2
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 131109f910
gnu: r-annotationfilter: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-annotationfilter): Update to 1.28.0.

Change-Id: Ib4cad5054f1cf174ee2ecb589f8442e9dc86e5dc
2024-05-08 12:53:21 +02:00
Ricardo Wurmus d90bc96e17
gnu: r-annotationdbi: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.66.0.

Change-Id: Ia103d540fc7e872fd96bffa044076c969c072319
2024-05-08 12:53:21 +02:00
Ricardo Wurmus cb56dc94bc
gnu: r-annotate: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.82.0.

Change-Id: I9940d1837c62c2421513021fe12fb87e629ba0df
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 55dca2271e
gnu: r-affxparser: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.76.0.

Change-Id: I9c412f0ef4f29d50e07f32a6944f13ba470cc6c3
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 563de39417
gnu: r-affyio: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.74.0.

Change-Id: If694dbba3f447019bb822ba94ff73976b77864c3
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 2299ed5417
gnu: r-affycoretools: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.76.0.

Change-Id: I486f8aca7a0d2a9640b3ae05ba50fdc6420fde24
2024-05-08 12:53:21 +02:00
Ricardo Wurmus b563dc47fd
gnu: r-affycontam: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.62.0.

Change-Id: Ia2688e906b16b11d96925beded22d47cbb3f67c0
2024-05-08 12:53:21 +02:00
Ricardo Wurmus fdd6664fb1
gnu: r-affycomp: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.80.0.

Change-Id: I544133d53f46e156cd0483c27a88c56f31be4af4
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 65e26fef18
gnu: r-affy: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-affy): Update to 1.82.0.

Change-Id: Ie17dffe76198632a8e1ea6f7a0f1c9eb68049b98
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 0949c9f244
gnu: r-nebulosa: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-nebulosa): Update to 1.14.0.

Change-Id: I9d86fabf46fe139c6e6f210f46dafd5132c5adad
2024-05-08 12:53:21 +02:00
Ricardo Wurmus c322655c7d
gnu: r-italics: Update to 2.64.0.
* gnu/packages/bioconductor.scm (r-italics): Update to 2.64.0.

Change-Id: Ibed68d0d8209db3f5a76c507a58c76389d546af2
2024-05-08 12:53:21 +02:00
Ricardo Wurmus a32bba3fb6
gnu: r-isoformswitchanalyzer: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 2.4.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: I1e6f6767698f2f97cfc53637987a824a6d80609d
2024-05-08 12:53:21 +02:00
Ricardo Wurmus b4d31f1a10
gnu: r-iranges: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.38.0.

Change-Id: I9e1a24614dcfc179a5659b3bccdde26cb7b06dab
2024-05-08 12:53:21 +02:00
Ricardo Wurmus f4c03a251e
gnu: r-infercnv: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.20.0.
[inputs]: Remove python.

Change-Id: Ib8666fd27a504c824c747cc27960bde490459544
2024-05-08 12:53:21 +02:00
Ricardo Wurmus bec276a979
gnu: r-ideoviz: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.40.0.

Change-Id: I5b40d23a9955c9844eee99525977fdf72d7f31a8
2024-05-08 12:53:21 +02:00
Ricardo Wurmus d140d8a1c9
gnu: r-bluster: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.14.0.

Change-Id: I1648c28f20ff3649face1ac35ad76301591c5989
2024-05-08 12:53:21 +02:00
Ricardo Wurmus 6b72971be3
gnu: r-dyndoc: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-dyndoc): Update to 1.82.0.

Change-Id: Ib44ec47e918a680d271e8c8ea81db745f1f06325
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 657c030a57
gnu: r-dss: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-dss): Update to 2.52.0.

Change-Id: I8c0e6f9d232d74037efc76db8e11cc6ae1035d63
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 071eedcbc1
gnu: r-dropletutils: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-dropletutils): Update to 1.24.0.

Change-Id: I95b2770d95b73ca6aee987b4dadaf9d125bf5ba8
2024-05-08 12:53:20 +02:00
Ricardo Wurmus fa46220283
gnu: r-drimseq: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-drimseq): Update to 1.32.0.

Change-Id: Iff51e039659421421e54bf47765fb6e0d5ae8508
2024-05-08 12:53:20 +02:00
Ricardo Wurmus a841f1f692
gnu: r-dmrcate: Update to 3.0.0.
* gnu/packages/bioconductor.scm (r-dmrcate): Update to 3.0.0.
[propagated-inputs]: Add r-annotationhub.

Change-Id: I1b91adbb7d766d3301d2cd03b933c57fe755dd8a
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 7f4e7bff48
gnu: r-derfinderhelper: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-derfinderhelper): Update to 1.38.0.

Change-Id: Iefab596f9f9d795d0fbcb85c2e01cea0f0263877
2024-05-08 12:53:20 +02:00
Ricardo Wurmus d9002c14f9
gnu: r-derfinder: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-derfinder): Update to 1.38.0.

Change-Id: I4f73fe46311540dd31e3eb9d58114a555cada8ce
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 4b2e1b69cd
gnu: r-densvis: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-densvis): Update to 1.14.0.

Change-Id: I7d8d13236a8e2a87dd6ab1cb6fac7277c615c170
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 5c93327cd9
gnu: r-delayedarray: Update to 0.30.0.
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.30.0.

Change-Id: I2b823b0f6da15420f9f208932e2306cde7c6de0e
2024-05-08 12:53:20 +02:00
Ricardo Wurmus fbfb298d0e
gnu: r-degreport: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-degreport): Update to 1.40.0.

Change-Id: I481637b9d661addbf2bc3ebaf1d396fc0087561e
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 622dc493e7
gnu: r-deepsnv: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.50.0.

Change-Id: Idb65967f3c76960b1db761c662adda3c84586abd
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 8e5486f5bd
gnu: r-decoupler: Update to 2.9.7.
* gnu/packages/bioconductor.scm (r-decoupler): Update to 2.9.7.
[propagated-inputs]: Add r-biocparallel and r-parallelly.

Change-Id: I8218c03aa7cfea84b9df58ff17500f9d3a6ecac5
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 12f94fb1ae
gnu: r-deconvr: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.10.0.

Change-Id: Ia56bc18028860d0aaeb78d479d5b7b162b5908b6
2024-05-08 12:53:20 +02:00
Ricardo Wurmus ebb70fe9b6
gnu: r-decontam: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-decontam): Update to 1.24.0.

Change-Id: Ia740e8953bd970ba9454944da2459a8d39c990bf
2024-05-08 12:53:20 +02:00
Ricardo Wurmus f1dbdc8522
gnu: r-deconrnaseq: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-deconrnaseq): Update to 1.46.0.

Change-Id: I637bcbd43e55d0125a2273e2431b9effebb4d409
2024-05-08 12:53:20 +02:00
Ricardo Wurmus aec3a47c8c
gnu: r-decomptumor2sig: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-decomptumor2sig): Update to 2.20.0.

Change-Id: I4f7cd015a500b904d725a9098907253b81e7d57c
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 40e85015aa
gnu: r-decipher: Update to 3.0.0.
* gnu/packages/bioconductor.scm (r-decipher): Update to 3.0.0.
[propagated-inputs]: Remove r-rsqlite.

Change-Id: I8fd3b7c179b7d4e06ad1e7f592add40b77061eee
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 199305df78
gnu: r-dearseq: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.16.0.

Change-Id: I34f7edb001fb1f63e67b5e2c8378f746aa8b7ad8
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 94b4335bd5
gnu: r-damefinder: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-damefinder): Update to 1.16.0.

Change-Id: I934f27e813e05d5cfef32eb0bec0bd784a200c5a
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 091e0144a2
gnu: r-dama: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-dama): Update to 1.76.0.

Change-Id: Ia2f960bffb184165a8aecfdb6673c03f4f10fc57
2024-05-08 12:53:20 +02:00
Ricardo Wurmus ba9b588001
gnu: r-cummerbund: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.46.0.

Change-Id: Ia93d7cb81143bfd418d943717ee1cd5e748a0902
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 6134ddd012
gnu: r-coverageview: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.42.0.

Change-Id: I357e71ea80487c2ea7d6c0b8444684567c901af1
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 5c83d7b88c
gnu: r-coregx: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-coregx): Update to 2.8.0.

Change-Id: I1d33a891228edf133d8cb0948bb605df2c9c5765
2024-05-08 12:53:20 +02:00
Ricardo Wurmus cf92a83ec2
gnu: r-cellid: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-cellid): Update to 1.12.0.

Change-Id: I620fe4d005eb28786f3d6b50b3459953f23e8184
2024-05-08 12:53:20 +02:00
Ricardo Wurmus 807f16e459
gnu: r-cardelino: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-cardelino): Update to 1.6.0.

Change-Id: I2b3b37fb959546ae218f03cd727a32a1808a224b
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 5ae5bc6a87
gnu: r-breakpointr: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-breakpointr): Update to 1.22.0.

Change-Id: If1c9422eb8780bbeafb5054c5b0533411f40590d
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 94cb2cee11
gnu: r-biocgenerics: Update to 0.50.0.
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.50.0.

Change-Id: I2b44832f6cde8d943db8307050efa6b68bb814b4
2024-05-08 12:53:19 +02:00
Ricardo Wurmus eaeab2d12d
gnu: r-biocversion: Update to 3.19.1.
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.19.1.

Change-Id: Ia707fe47c7749cc63fa057dddcc0d49f7443c2a1
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 06f7d75e10
gnu: r-barcodetrackr: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-barcodetrackr): Update to 1.12.0.

Change-Id: Ia20e92c383c7a89e1d6accba98cf879cd57de25a
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 89c8795fb8
gnu: r-banocc: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-banocc): Update to 1.28.0.

Change-Id: I90a50fc574f2c064375acad39315b167c5cb3586
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 47ab649ecd
gnu: r-bandits: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.20.0.

Change-Id: Icaa2655549d255e2894ed15977f0e5f0c9041fc4
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 3f1b37c851
gnu: r-bambu: Update to 3.6.0.
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.6.0.

Change-Id: I206c2867ba40bba100bd23c7d861bc3be778e09f
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 23d6984ba1
gnu: r-badregionfinder: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-badregionfinder): Update to 1.32.0.

Change-Id: I396ff2488562d13c93280082e93e5de3821c93da
2024-05-08 12:53:19 +02:00
Ricardo Wurmus ef47716688
gnu: r-bader: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-bader): Update to 1.42.0.

Change-Id: I6fa42bf109b5e5bfad1eb4f032e453475af42c2e
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 2f1fe68bee
gnu: r-basespacer: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-basespacer): Update to 1.48.0.

Change-Id: I9e2b2cb3a9497453e2653cdbe0288987ea187f0a
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 48c7540a27
gnu: r-bags: Update to 2.44.0.
* gnu/packages/bioconductor.scm (r-bags): Update to 2.44.0.

Change-Id: I4d7438dca325f8814d7c3bc644aa79c2ebab9d22
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 204c59d2fd
gnu: r-baalchip: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-baalchip): Update to 1.30.0.
[inputs]: Remove perl.

Change-Id: I42125e71f8985a4b9d9e797b1178386d2f9d6451
2024-05-08 12:53:19 +02:00
Ricardo Wurmus e1c3e7b8d0
gnu: r-awst: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-awst): Update to 1.12.0.

Change-Id: I1d9bdf4378b978bf9a3ee6e996c78eb25c2e10ad
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 6622a40596
gnu: r-awfisher: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-awfisher): Update to 1.18.0.

Change-Id: I0f28eefaa791426014d2ed3268aa6a8cff6ac6ef
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 030591f684
gnu: r-attract: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-attract): Update to 1.56.0.

Change-Id: Ic9657b83e27fd228ef454b4f455fbb79002f056e
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 00c6334309
gnu: r-atsnp: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-atsnp): Update to 1.20.0.

Change-Id: I36f9baa45b2483bcbb0c9a25c5b938c4a0df16fa
2024-05-08 12:53:19 +02:00
Ricardo Wurmus cd616ff646
gnu: r-atena: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-atena): Update to 1.10.0.
[propagated-inputs]: Add r-cli, r-genomicfeatures, and r-matrixgenerics.

Change-Id: I2aef381c001638e111125cd60b07b5fc7b9e01a9
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 499ca07277
gnu: r-asset: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-asset): Update to 2.22.0.

Change-Id: Ie3984d92c32734b258f4106d9bef01bef060e089
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 537c1879a8
gnu: r-assessorf: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-assessorf): Update to 1.22.0.

Change-Id: Ic2f5c1a2e5443e69574e30abe86ae3a19c2156ea
2024-05-08 12:53:19 +02:00
Ricardo Wurmus 2fc6d3bf31
gnu: r-aspli: Update to 2.14.0.
* gnu/packages/bioconductor.scm (r-aspli): Update to 2.14.0.
[propagated-inputs]: Add r-txdbmaker.

Change-Id: Ib60f87bf6166c68c6baded4e8555bafcf9573100
2024-05-08 12:53:19 +02:00
Ricardo Wurmus e9d16dec70
gnu: r-asics: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-asics): Update to 2.20.0.

Change-Id: I6a778323b57e99a8bc8c1a2e2227079d9bdaff1c
2024-05-08 12:53:19 +02:00
Ricardo Wurmus ddddc13f93
gnu: r-asgsca: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-asgsca): Update to 1.38.0.

Change-Id: I3f22548eae87db3eeb6691b45c30ab2edd452aac
2024-05-08 12:53:19 +02:00
Ricardo Wurmus dffc5cf95c
gnu: r-aseb: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-aseb): Update to 1.48.0.

Change-Id: Ifb4450374fa2831bab9e360de6ec12f7c22f47d9
2024-05-08 12:53:18 +02:00
Ricardo Wurmus f4c71864d5
gnu: r-asafe: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-asafe): Update to 1.30.0.

Change-Id: Id54647b1dadf071ea51c180ca50e5386a6078188
2024-05-08 12:53:18 +02:00
Ricardo Wurmus 3f31823f41
gnu: r-arrayquality: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-arrayquality): Update to 1.82.0.

Change-Id: I94b389cd121cb3748ad7a938c37b0c5152820ba3
2024-05-08 12:53:18 +02:00
Ricardo Wurmus a0cef9b470
gnu: r-arraymvout: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-arraymvout): Update to 1.62.0.

Change-Id: Ic8cc9efc851af7471125e2ff2084d685c099d32b
2024-05-08 12:53:18 +02:00
Ricardo Wurmus db7d9feb79
gnu: r-arrayqualitymetrics: Update to 3.60.0.
* gnu/packages/bioconductor.scm (r-arrayqualitymetrics): Update to 3.60.0.

Change-Id: Ia67c533b2b5c227a8cd2acaac8ab717517cd5d05
2024-05-08 12:53:18 +02:00
Ricardo Wurmus e17b3add0d
gnu: r-arrayexpress: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-arrayexpress): Update to 1.64.0.

Change-Id: I01be57f62c13271442c4fb174ad923e29f8f63e8
2024-05-08 12:53:18 +02:00
Ricardo Wurmus 98eebefbf8
gnu: r-antiprofiles: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-antiprofiles): Update to 1.44.0.

Change-Id: Iac22dec83898624e88ad67983d4809729d6e2d09
2024-05-08 12:53:18 +02:00
Ricardo Wurmus 98890f8da7
gnu: r-annmap: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-annmap): Update to 1.46.0.

Change-Id: I2f693693c75b2729aa81c593c0ff3c07cc4f486f
2024-05-08 12:53:18 +02:00
Ricardo Wurmus 22784fbacf
gnu: r-anf: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-anf): Update to 1.26.0.

Change-Id: I0027bfaa713cf5b75c9ec52d72715c1d56955b92
2024-05-08 12:53:18 +02:00
Ricardo Wurmus 28cbac7461
gnu: r-aneufinder: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.32.0.

Change-Id: I1e3061cf514b735c84abc8b4e850236f493dd75d
2024-05-08 12:53:18 +02:00
Ricardo Wurmus 416fb74e92
gnu: r-altcdfenvs: Update to 2.66.0.
* gnu/packages/bioconductor.scm (r-altcdfenvs): Update to 2.66.0.

Change-Id: I4d6881076a68394206501f254045ff59a2b4bcec
2024-05-08 12:53:18 +02:00
Ricardo Wurmus d237852199
gnu: r-alpsnmr: Update to 4.6.0.
* gnu/packages/bioconductor.scm (r-alpsnmr): Update to 4.6.0.

Change-Id: Ia35eda0125de276989767b8d663a128f3014582a
2024-05-08 12:53:18 +02:00
Ricardo Wurmus b6f742d0f6
gnu: r-alphabeta: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-alphabeta): Update to 1.18.0.

Change-Id: I9970a01aec806faad204033d9ece392becfaca99
2024-05-08 12:53:18 +02:00
Ricardo Wurmus 70ac81d484
gnu: r-alevinqc: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.20.0.

Change-Id: Ib24ff6f3db37bf5d746c745999b768e1ec89dca3
2024-05-08 12:53:18 +02:00
Ricardo Wurmus af81afffd5
gnu: r-aldex2: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-aldex2): Update to 1.36.0.

Change-Id: Iab362c11ad5960901eaefa016cda09cf65d23355
2024-05-08 12:53:18 +02:00
Ricardo Wurmus 47d9a75f1b
gnu: r-anvil: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.16.0.
[propagated-inputs]: Add r-biocbaseutils and r-yaml.

Change-Id: I30f38ca310819d75e5f57e381b0845632b022ff7
2024-05-08 12:53:18 +02:00
Ricardo Wurmus 736a73dec9
gnu: r-annotationhubdata: Update to 1.34.0.
* gnu/packages/bioconductor.scm (r-annotationhubdata): Update to 1.34.0.

Change-Id: I6e786c6c087b70650b3d0d84d14513a5856a08f2
2024-05-08 12:53:18 +02:00
Ricardo Wurmus daae14ea1d
gnu: r-animalcules: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-animalcules): Update to 1.20.0.
[propagated-inputs]: Add r-ggforce and r-tidyr.

Change-Id: Ifc2493d7de069ba05ab79e6b8aeb0302325c9603
2024-05-08 12:53:18 +02:00
Ricardo Wurmus 6ed0d665aa
gnu: r-ancombc: Update to 2.6.0.
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.6.0.

Change-Id: I925595eb4d2191a75880cc28188d9d71e55bebd9
2024-05-08 12:53:18 +02:00
Ricardo Wurmus e6f568abde
gnu: r-anaquin: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-anaquin): Update to 2.28.0.

Change-Id: I4ab5cff777b72696008df29ad3ef12f35e3106db
2024-05-08 12:53:18 +02:00
Ricardo Wurmus a10b2020ca
gnu: r-amaretto: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-amaretto): Update to 1.20.0.

Change-Id: I22c13aa35f82397a9af41f44f5f335836b69e97d
2024-05-08 12:53:18 +02:00
Ricardo Wurmus 530f6d12d9
gnu: r-amplican: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-amplican): Update to 1.26.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: I753f06199b24411565122e188da70e87278d7aa2
2024-05-08 12:53:18 +02:00
Ricardo Wurmus e623b114d2
gnu: r-amountain: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-amountain): Update to 1.30.0.

Change-Id: I17e8eedccc79be973bba942ffbfd8ce24d89e43e
2024-05-08 12:53:18 +02:00
Ricardo Wurmus 01e031f6c5
gnu: r-airpart: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-airpart): Update to 1.12.0.

Change-Id: Iea2277db96d4b8785e0a0199ca08256699c31777
2024-05-08 12:53:18 +02:00
Ricardo Wurmus 3a6e6347c2
gnu: r-aims: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-aims): Update to 1.36.0.

Change-Id: Iff2af60c0b6a0fc575d142a10f0156d520efd802
2024-05-08 12:53:17 +02:00
Ricardo Wurmus 73e16238c8
gnu: r-agimicrorna: Update to 2.54.0.
* gnu/packages/bioconductor.scm (r-agimicrorna): Update to 2.54.0.

Change-Id: I16294ff145be59bb5499ad16772cd4efe72347f2
2024-05-08 12:53:17 +02:00
Ricardo Wurmus aa54d5f36f
gnu: r-adductomicsr: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-adductomicsr): Update to 1.20.0.

Change-Id: I048fb7fbc173ce6883d80ca097b75b69704e2750
2024-05-08 12:53:17 +02:00
Ricardo Wurmus 1406bc656a
gnu: r-agilp: Update to 3.36.0.
* gnu/packages/bioconductor.scm (r-agilp): Update to 3.36.0.

Change-Id: Iddd5266a7f88a3a8eae567151b14010433f98c61
2024-05-08 12:53:17 +02:00
Ricardo Wurmus c30eaed62b
gnu: r-aggregatebiovar: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-aggregatebiovar): Update to 1.14.0.

Change-Id: I5a510e12942e9afcd29b52f89d737a8a5707e3be
2024-05-08 12:53:17 +02:00
Ricardo Wurmus 747c727c8f
gnu: r-agdex: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-agdex): Update to 1.52.0.

Change-Id: I2facf3bc4e3d504804fed3b42b26d6fce393ea3b
2024-05-08 12:53:17 +02:00
Ricardo Wurmus fe2f93f9fc
gnu: r-affyrnadegradation: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-affyrnadegradation): Update to 1.50.0.

Change-Id: Iaa9846636b2cb4c1a303f5190be4d3e3f9ee9240
2024-05-08 12:53:17 +02:00
Ricardo Wurmus 4dc97b0c46
gnu: r-affyplm: Update to 1.80.0.
* gnu/packages/bioconductor.scm (r-affyplm): Update to 1.80.0.

Change-Id: I2c16761eb1ad8cb2ffc087f6b928686964157efd
2024-05-08 12:53:17 +02:00
Ricardo Wurmus e5ab4f1dca
gnu: r-affylmgui: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-affylmgui): Update to 1.78.0.

Change-Id: If26c0573c98b3d1bab684127e969489ae0c8c51e
2024-05-08 12:53:17 +02:00
Ricardo Wurmus 8c028e21bc
gnu: r-affyilm: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-affyilm): Update to 1.56.0.

Change-Id: I118c3fc0040100233d79539d5f3c24836e882f4c
2024-05-08 12:53:17 +02:00
Ricardo Wurmus 32f127f915
gnu: r-affixcan: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-affixcan): Update to 1.22.0.

Change-Id: Idf8886497dfabcd10502a36aa002ba7a83e46938
2024-05-08 12:53:17 +02:00
Ricardo Wurmus aa5177a090
gnu: r-adsplit: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-adsplit): Update to 1.74.0.

Change-Id: Ib471d6086dfc782ca4ce5efaa8d7f59e601d3e41
2024-05-08 12:53:17 +02:00
Ricardo Wurmus 128d0ead08
gnu: r-adimpute: Update to 1.14.0.
* gnu/packages/bioconductor.scm (r-adimpute): Update to 1.14.0.

Change-Id: I888c1281fe44b7877fe01ad10cbca63a30ba337c
2024-05-08 12:53:17 +02:00
Ricardo Wurmus 6a698c1162
gnu: r-adamgui: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-adamgui): Update to 1.20.0.

Change-Id: I16b63e3e98eddfe0e038b40062d38524881b8e41
2024-05-08 12:53:17 +02:00
Ricardo Wurmus 21b9cd0355
gnu: r-adam: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-adam): Update to 1.20.0.

Change-Id: I417244fa99e124a285fb020e758ba471d6620d4e
2024-05-08 12:53:17 +02:00
Ricardo Wurmus e28ff2ed30
gnu: r-adacgh2: Update to 2.44.0.
* gnu/packages/bioconductor.scm (r-adacgh2): Update to 2.44.0.
[propagated-inputs]: Remove r-snapcgh.

Change-Id: I47c7a0d00d32cf71ec2f16844ab3a60d120cfc3f
2024-05-08 12:53:17 +02:00
Ricardo Wurmus 5d1d4936b1
gnu: r-absseq: Update to 1.58.0.
* gnu/packages/bioconductor.scm (r-absseq): Update to 1.58.0.

Change-Id: I9433d9307416e967a70587eee5b5d891c270f8ee
2024-05-08 12:53:17 +02:00
Ricardo Wurmus 1fdc5eba8a
gnu: r-abarray: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-abarray): Update to 1.72.0.

Change-Id: I207f652b0c5f6d9069de675f245f4fb471d560e9
2024-05-08 12:53:17 +02:00
Ricardo Wurmus 6dbc09c6d0
gnu: r-tximportdata: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-tximportdata): Update to 1.32.0.

Change-Id: If18a4d7d8b6877beedec24cb17a989e7485af8c8
2024-05-08 12:53:17 +02:00
Ricardo Wurmus 6332e4ed23
gnu: r-tcgabiolinksgui-data: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): Update to 1.24.0.

Change-Id: Ie34a052ff74d193f7472ef25fa9fabf6dbbb19a7
2024-05-08 12:53:17 +02:00
Ricardo Wurmus 0148d18e4b
gnu: r-sesamedata: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-sesamedata): Update to 1.22.0.

Change-Id: I7b57169a24d3f210f9d5373d375c1fcdc8a32b76
2024-05-08 12:53:17 +02:00
Ricardo Wurmus 49912ae08e
gnu: r-parathyroidse: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-parathyroidse): Update to 1.42.0.

Change-Id: I1ee5d4eb8d2f511cd437851aa6fd17b23f85b548
2024-05-08 12:53:17 +02:00
Ricardo Wurmus 8c4929306f
gnu: r-curatedtcgadata: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.26.0.

Change-Id: Ia96fe42b0b41043879cff80d99c56b48afb06e5b
2024-05-08 12:53:17 +02:00
Ricardo Wurmus a14d5f02b9
gnu: r-gagedata: Update to 2.42.0.
* gnu/packages/bioconductor.scm (r-gagedata): Update to 2.42.0.

Change-Id: I3a8be1fb8255f621b6481dabdeac5460b90ebbb7
2024-05-08 12:53:17 +02:00
Ricardo Wurmus eca80e2bf7
gnu: r-affydata: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-affydata): Update to 1.52.0.

Change-Id: Ibbdeca7d8ed91da88d14f547403d43c8b9e45775
2024-05-08 12:53:17 +02:00
Ricardo Wurmus aa538cc886
gnu: r-all: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-all): Update to 1.46.0.

Change-Id: I20d1f918a24e47cee853668b736639369c1e904e
2024-05-08 12:53:17 +02:00
Ricardo Wurmus f27c6caa8c
gnu: r-hsmmsinglecell: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-hsmmsinglecell): Update to 1.24.0.

Change-Id: Ie94c7cd87ac4cdaad47035cb110fb58bb6f68126
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 5b5c134658
gnu: r-pasilla: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-pasilla): Update to 1.32.0.

Change-Id: I90a11b64f4cba746c9d5d70bd7746497fe3781a6
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 7d5f112600
gnu: r-msigdb: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-msigdb): Update to 1.12.0.

Change-Id: Ia63cb5d074afcd5b6c597d22c4e5c4f14b59303d
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 46eb71b653
gnu: r-msexperiment: Update to 1.6.0.
* gnu/packages/bioconductor.scm (r-msexperiment): Update to 1.6.0.
[propagated-inputs]: Add r-biocgenerics and r-dbi.

Change-Id: I1acadf9e878f4593baf583933c5ccca3daf7ec0d
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 7e05fa61b0
gnu: r-msdata: Update to 0.44.0.
* gnu/packages/bioconductor.scm (r-msdata): Update to 0.44.0.

Change-Id: I479c861eceb1f50c91d589118a68e217236e89e4
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 27c00a789e
gnu: r-minfidata: Update to 0.50.0.
* gnu/packages/bioconductor.scm (r-minfidata): Update to 0.50.0.

Change-Id: I6504e8f6ffe57ba1cdf538d2f60c21ff26b06407
2024-05-08 12:53:16 +02:00
Ricardo Wurmus efc85dfb4d
gnu: r-mousegastrulationdata: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-mousegastrulationdata): Update to 1.18.0.

Change-Id: I4b005c54451d7c306cb4137e4fe668c6e53c840a
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 16e58db1ba
gnu: r-methylclockdata: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-methylclockdata): Update to 1.12.0.

Change-Id: Ibfa765d93c0ed2005f7fb6f630c3104cd30e8371
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 3b1f4f041d
gnu: r-macrophage: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-macrophage): Update to 1.20.0.

Change-Id: I589dd25948fedd3bbe91fddada8e155567cf2d93
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 89a647662c
gnu: r-jaspar2016: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-jaspar2016): Update to 1.32.0.

Change-Id: I826a8a93e0adce98b7ad767c8fbaa7ffb957c554
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 5c28a456e7
gnu: r-italicsdata: Update to 2.42.0.
* gnu/packages/bioconductor.scm (r-italicsdata): Update to 2.42.0.

Change-Id: I10947b136b273e06b9ac88bf1786b62b0a6739f5
2024-05-08 12:53:16 +02:00
Ricardo Wurmus cd0b5d0892
gnu: r-illumina450probevariants-db: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-illumina450probevariants-db): Update to 1.40.0.

Change-Id: Ic18b5dcdda0e002375bb9ed43944168f78eb2906
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 3f122a9a1a
gnu: r-hdcytodata: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-hdcytodata): Update to 1.24.0.

Change-Id: Icf2ad5519ee710c3b275f2f608a2bc7674bf3805
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 38d81984dc
gnu: r-genomationdata: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-genomationdata): Update to 1.36.0.

Change-Id: Idf6dbb8e87ed124d9dd3ae10ff3ea78c58b22496
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 66f99b50e5
gnu: r-genelendatabase: Update to 1.39.0.
* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.39.0.

Change-Id: I0630a8fed9f28ad5883a8bb1e4f3c77f16e7ac34
2024-05-08 12:53:16 +02:00
Ricardo Wurmus 76805a5744
gnu: r-flowsorted-blood-epic: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-flowsorted-blood-epic): Update to 2.8.0.

Change-Id: I000d233d1a78f36e8daed08f0112cc592b2f99f6
2024-05-08 12:53:16 +02:00
Ricardo Wurmus aded842e92
gnu: r-flowsorted-blood-450k: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-flowsorted-blood-450k): Update to 1.42.0.

Change-Id: I07c3a8640e8b7ca9e36b0a3e81d9831fc4d7299e
2024-05-08 12:53:16 +02:00
Ricardo Wurmus f5a724eb16
gnu: r-copyhelper: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-copyhelper): Update to 1.36.0.

Change-Id: I4726f8bf6c654b03ee4eb84ae697e7844d06e164
2024-05-08 12:53:16 +02:00
Ricardo Wurmus b53302805e
gnu: r-chromstardata: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-chromstardata): Update to 1.30.0.

Change-Id: I19aa49ac9d6499d2cea91b0d45fd04f10511b18f
2024-05-08 12:53:16 +02:00
Ricardo Wurmus cfb000d7e5
gnu: r-champdata: Update to 2.36.0.
* gnu/packages/bioconductor.scm (r-champdata): Update to 2.36.0.

Change-Id: I5387b2e3722e95911a5355cc56d83086ef205a4c
2024-05-08 12:53:16 +02:00