eaca440b65
gnu: python-llfuse: Update to 1.3.8.
...
* gnu/packages/python-xyz.scm (python-llfuse): Update to 1.3.8.
2020-12-09 15:41:25 -05:00
2a23e3f582
gnu: dealii: Update to 9.2.0.
...
* gnu/packages/maths.scm (dealii): Update to 9.2.0.
2020-12-09 13:42:05 -06:00
e36291ef52
gnu: Add r-restrserve.
...
* gnu/packages/cran.scm (r-restrserve): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-09 19:33:35 +00:00
5f6a001933
gnu: Add kiwix-desktop.
...
* gnu/packages/web.scm (kiwix-desktop): New variable.
2020-12-09 18:25:32 +01:00
acbf47a067
gnu: Add kiwix-lib.
...
* gnu/packages/web.scm (kiwix-lib): New variable.
2020-12-09 18:25:32 +01:00
44308c8c5f
gnu: Add libzim.
...
* gnu/packages/web.scm (libzim): New variable.
2020-12-09 18:24:46 +01:00
a294eecd98
gnu: Add emacs-helm-switch-to-repl.
...
* gnu/packages/emacs-xyz.scm (emacs-helm-switch-to-repl): New variable.
2020-12-09 17:27:51 +01:00
5103459664
gnu: emacs-debbugs: Update to 0.27.
...
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.27.
2020-12-09 14:54:27 +01:00
3d85c3ec65
gnu: pciutils: Fix compilation error on GNU/Hurd.
...
* gnu/packages/patches/pciutils-hurd-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pciutils.scm (pciutils)[arguments]: Add
'apply-hurd-patch' phase when (hurd-target?) is true.
[inputs]: Add "hurd-patch" entry when (hurd-target?) is true.
2020-12-09 14:13:33 +01:00
69a0440a02
doc: Document 'advertise?' for 'guix-publish-configuration'.
...
* doc/guix.texi (Base Services): Document the 'advertise?' field of
'guix-publish-configuration'.
2020-12-09 14:13:33 +01:00
f066e65713
services: guix-publish: Depend on 'avahi-daemon' when needed.
...
* gnu/services/base.scm (guix-publish-shepherd-service): Add
'user-processes' to 'requirement'. When ADVERTISE? is true, also add
'avahi-daemon'.
2020-12-09 14:13:32 +01:00
59a6780f70
services: avahi: Depend on 'user-processes'.
...
* gnu/services/avahi.scm (avahi-shepherd-service): Add 'user-processes'
to 'requirement'.
2020-12-09 14:13:32 +01:00
ebf11de4e3
gnu: r-diffbind: Update to 3.0.8.
...
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.8.
2020-12-09 12:12:48 +01:00
4617cc7fd5
gnu: r-rhtslib: Propagate zlib.
...
* gnu/packages/bioinformatics.scm (r-rhtslib)[inputs]: Move zlib from here...
[propagated-inputs]: ...to here.
(r-variantannotation, r-rsamtools, r-bamsignals, r-rhdf5,
r-methylkit)[inputs]: Remove zlib.
* gnu/packages/bioconductor.scm (r-diffbind, r-quasr, r-cytolib, r-ncdfflow,
r-flowworkspace, r-seqbias)[inputs]: Remove zlib.
2020-12-09 12:12:48 +01:00
7601015fc9
gnu: r-delayedmatrixstats: Update to 1.12.1.
...
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.1.
[propagated-inputs]: Add r-matrixgenerics.
2020-12-09 12:12:48 +01:00
cde035e67f
gnu: r-gqtlstats: Update to 1.21.3.
...
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.21.3.
2020-12-09 12:12:48 +01:00
6a4818716d
gnu: r-gqtlbase: Update to 1.21.1.
...
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.21.1.
[arguments]: Add phase to patch broken NAMESPACE file.
2020-12-09 12:12:48 +01:00
64f9fb308f
gnu: r-bigmelon: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.16.0.
2020-12-09 12:12:48 +01:00
9f6e2bfe1f
gnu: r-watermelon: Update to 1.34.0.
...
* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.34.0.
2020-12-09 12:12:47 +01:00
8db36c1f68
gnu: r-yarn: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.16.0.
2020-12-09 12:12:47 +01:00
adf6edc750
gnu: r-quantro: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.24.0.
2020-12-09 12:12:47 +01:00
4eeaa159d2
gnu: r-lumi: Update to 2.42.0.
...
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.42.0.
2020-12-09 12:12:47 +01:00
0b7dd44706
gnu: r-methylumi: Update to 2.36.0.
...
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.36.0.
2020-12-09 12:12:47 +01:00
e5a4198bc3
gnu: r-minfi: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.36.0.
2020-12-09 12:12:47 +01:00
45dfb75166
gnu: Add r-catalyst.
...
* gnu/packages/bioconductor.scm (r-catalyst): New variable.
2020-12-09 12:12:47 +01:00
43bf50ecae
gnu: r-ggcyto: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.18.0.
2020-12-09 12:12:47 +01:00
b856a48768
gnu: r-scdd: Update to 1.14.0.
...
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.14.0.
2020-12-09 12:12:47 +01:00
3f04b8167b
gnu: r-chipcomp: Update to 1.20.0.
...
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.20.0.
2020-12-09 12:12:47 +01:00
1174317e03
gnu: r-pcatools: Update to 2.2.0.
...
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.2.0.
2020-12-09 12:12:47 +01:00
970984237a
gnu: r-biocviews: Update to 1.58.1.
...
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.58.1.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:47 +01:00
b03c955c6f
gnu: r-scran: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.0.
[propagated-inputs]: Add r-bluster, r-scuttle. Remove r-iranges.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:47 +01:00
d4b5d18684
gnu: r-scater: Update to 1.18.3.
...
* gnu/packages/bioconductor.scm (r-scater): Update to 1.18.3.
[propagated-inputs]: Add r-gridextra, r-scutlle. Remove r-beachmat, r-rcpp.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:46 +01:00
0e60dda0ae
gnu: Add r-scuttle.
...
* gnu/packages/bioconductor.scm (r-scuttle): New variable.
2020-12-09 12:12:46 +01:00
10c87ecf77
gnu: r-delayedmatrixstats: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.0.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
2020-12-09 12:12:46 +01:00
53affb349a
gnu: r-rhdf5: Update to 2.34.0.
...
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.34.0.
[propagated-inputs]: Add r-rhdf5filters.
[arguments]: Avoid to have a plain directory on the list of libraries to
link.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:46 +01:00
86fcceeae1
gnu: Add r-rhdf5filters.
...
* gnu/packages/bioinformatics.scm (r-rhdf5filters): New variable.
2020-12-09 12:12:46 +01:00
4ef898d449
gnu: r-singlecellexperiment: Update to 1.12.0.
...
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.12.0.
2020-12-09 12:12:46 +01:00
d0db04fcaf
gnu: r-yapsa: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.16.0.
2020-12-09 12:12:46 +01:00
798ec28916
gnu: r-biocsingular: Update to 1.6.0.
...
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.6.0.
2020-12-09 12:12:46 +01:00
dd9341ffa3
gnu: r-genomicinteractions: Update to 1.24.0.
...
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.24.0.
2020-12-09 12:12:46 +01:00
35dae95110
gnu: r-interactionset: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.18.0.
2020-12-09 12:12:46 +01:00
60ad3c7b3b
gnu: r-genomationdata: Update to 1.22.0.
...
* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.22.0.
2020-12-09 12:12:46 +01:00
5e719988f2
gnu: Add r-sparsematrixstats.
...
* gnu/packages/bioconductor.scm (r-sparsematrixstats): New variable.
2020-12-09 12:12:46 +01:00
a23310ffc2
gnu: Add r-bluster.
...
* gnu/packages/bioconductor.scm (r-bluster): New variable.
2020-12-09 12:12:45 +01:00
aca4ebe40a
gnu: r-annaffy: Update to 1.62.0.
...
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.62.0.
2020-12-09 12:12:45 +01:00
e707820442
gnu: r-sushi: Update to 1.28.0.
...
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.28.0.
2020-12-09 12:12:45 +01:00
83129edfb7
gnu: r-gwascat: Update to 2.22.0.
...
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.22.0.
[propagated-inputs]: Add r-biocfilecache, r-readr, r-snpstats, and
r-variantannotation; remove r-biocgenerics, r-ggplot2, r-rsamtools, and
r-rtracklayer.
2020-12-09 12:12:45 +01:00
717e53fdc0
gnu: r-gviz: Update to 1.34.0.
...
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.34.0.
2020-12-09 12:12:45 +01:00
0a8d08e887
gnu: r-ldblock: Update to 1.20.0.
...
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.20.0.
2020-12-09 12:12:45 +01:00
494010ad3e
gnu: r-erma: Update to 1.6.0.
...
* gnu/packages/bioinformatics.scm (r-erma): Update to 1.6.0.
2020-12-09 12:12:45 +01:00
Leo Famulari
Eric Bavier
Eric Brown
Pierre Neidhardt
Nicolas Goaziou
Ludovic Courtès
Ricardo Wurmus
zimoun
Roel Janssen