da4a707c88
gnu: roary: Update to 3.11.0.
...
* gnu/packages/bioinformatics.scm (roary): Update to 3.11.0.
[inputs]: Add perl-digest-md5-file.
2017-11-09 18:12:32 +10:00
e5f748a6c0
gnu: totem: Enable parallel build.
...
* gnu/packages/gnome.scm (totem)[arguments]: Set #:parallel-build? to #t
implicitly.
2017-11-08 20:43:40 -05:00
8f220b7b41
gnu: tremc: Update to 0.9.0-1.9755b50.
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* gnu/packages/bittorrent.scm (tremc): Update to 0.9.0-1.9755b50.
[version]: Use git-version.
[source]: Use git-file-name.
2017-11-08 19:32:32 -05:00
ea1f073d73
gnu: slurm: Update to 16.05.11 [fixes CVE-2017-15566].
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* gnu/packages/parallel.scm (slurm): Update to 16.05.11.
[source]: Use the recommended download URL.
2017-11-08 19:32:31 -05:00
a3dd13ae0e
gnu: rpm: Update to 4.13.0.2 [fixes CVE-2017-{7500,7501}].
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* gnu/packages/package-management.scm (rpm): Update to 4.13.0.2.
2017-11-08 19:00:07 -05:00
7df4194b16
gnu: python-icalendar: Update to 4.0.0.
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* gnu/packages/python.scm (python-icalendar): Update to 4.0.0.
2017-11-08 18:36:29 -05:00
03b154f800
gnu: syncthing: Update to 0.14.40.
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* gnu/packages/syncthing.scm (syncthing): Update to 0.14.40.
[inputs]: Add go-github-com-zillode-notify.
2017-11-08 17:24:02 -05:00
52ff28e4aa
gnu: Add go-github-com-zillode-notify.
...
* gnu/packages/syncthing.scm (go-github-com-zillode-notify): New variable.
2017-11-08 17:24:01 -05:00
4cf6827de3
gnu: go-github-com-audriusbutkevicius-kcp-go: Update to 0.0.0-1.8ae5f52.
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* gnu/packages/syncthing.scm (go-github-com-audriusbutkevicius-kcp-go):
Update to 0.0.0-1.8ae5f52.
[propagated-inputs]: Add go-github-com-tjfoc-gmsm-sm4.
2017-11-08 17:24:01 -05:00
f44169c2a7
gnu: Add go-github-com-tjfoc-gmsm-sm4.
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* gnu/packages/syncthing.scm (go-github-com-tjfoc-gmsm-sm4): New variable.
2017-11-08 17:24:01 -05:00
c5a4a92f1a
gnu: Improve error reporting of the use-.*modules macros.
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Suggested by Julien Lepiller and myglc2
at <https://lists.gnu.org/archive/html/guix-devel/2017-11/msg00106.html >.
* gnu.scm (%try-use-modules): New procedure.
(package-module-hint, service-module-hint): New procedures.
(try-use-modules): New macro.
(use-package-modules, use-service-modules, use-system-modules): Use it.
* tests/guix-system.sh: Test it.
2017-11-08 22:36:20 +01:00
49483f7138
services: Add 'lookup-service-types'.
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* gnu/services.scm (lookup-service-types): New procedure.
* tests/services.scm ("lookup-service-types"): New test.
2017-11-08 22:31:58 +01:00
3943913fac
services: 'fold-service-types' includes (gnu services).
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* gnu/services.scm (all-service-modules): New procedure.
(fold-service-types): Use it for the default MODULES value.
2017-11-08 22:31:58 +01:00
a3d37f3ae5
services: 'fold-service-types' honors its seed.
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* gnu/services.scm (fold-service-types): Use SEED instead of '().
2017-11-08 22:31:58 +01:00
23735137eb
ui: Define and honor '&error-location' and '&fix-hint' conditions.
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* guix/utils.scm (&error-location, &fix-hint): New condition types.
* guix/ui.scm (report-load-error): Handle them.
(call-with-error-handling): Honor '&error-location'.
2017-11-08 22:31:58 +01:00
37eed374d9
ui: Introduce (guix i18n).
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* guix/ui.scm (G_, N_, _P, %gettext-domain, %package-text-domain): Move
to...
* guix/i18n.scm: ... here. New file.
2017-11-08 22:31:58 +01:00
0af94ad52f
gnu: service: Update comment.
...
* gnu/services/base.scm (guix-activation): Update comment.
2017-11-08 18:23:06 +01:00
d9565f7d87
install: Use overlayfs instead of unionfs.
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I dediced to keep adding /tmp as tmpfs since I was not able to trigger bug
while still using unionfs, so I could not verify whether this mount is still
needed with overlayfs. Mapping /tmp to tmpfs does not harm, so we are on the
save side.
* gnu/system/install.scm (make-cow-store): Mount /gnu/store without additional
read-only bind-mount, since in overlayfs the "lower" level is always
read-only. Add work-dir required by overlayfs. No need to sleep anymore
since now using the mount syscall. [unionfs]: Remove now unused function.
(%installation-services): Update comment.
(installation-os)[file-systems]: Update comment.
2017-11-08 18:23:06 +01:00
c828969036
build: Use overlayfs instead of unionfs.
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Overlayfs is part of the kernel, while unionfs needs FUSE. This also reduces
the size of the initrd by ca. 4.3% (487K).
* gnu/build/linux-boot.scm (mount-root-file-system): Remove optional parameter
"unionfs"; mount using overlayfs instead of unionfs; new directory layout
requied by overlayfs; update documentation.
[mark-as-not-killable]: Remove now unused function
* gnu/system/linux-initrd.scm (file-system-packages): Remove now unused
packages "unionfs-fuse/static" and thus unused related 'if'.
(linux-modules): Replace "fuse" by "overlay".
2017-11-08 18:23:05 +01:00
34260a10d7
gnu: miso: Use pypi-uri.
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* gnu/packages/bioinformatics.scm (miso)[source]: Use pypi-uri.
2017-11-08 17:41:08 +01:00
e5c17b8d9d
gnu: Add r-vcd.
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* gnu/packages/cran.scm (r-vcd): New variable.
2017-11-08 17:34:35 +01:00
018cf270a3
gnu: Add r-laeken.
...
* gnu/packages/cran.scm (r-laeken): New variable.
2017-11-08 17:34:11 +01:00
308c08d371
doc: Move paragraph about signature verification to the top.
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* doc/contributing.texi (Submitting Patches): Remind contributors to verify
cryptographic signatures at the very beginning.
2017-11-08 17:19:45 +01:00
697e341e74
gnu: fastcap: Use texlive-tiny.
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* gnu/packages/engineering.scm (fastcap)[native-inputs]: Replace texlive with
texlive-tiny.
[arguments]: Fix indentation; set HOME in "make-pdf" phase to avoid font
errors with texlive-tiny.
2017-11-08 17:15:24 +01:00
7e3aca2b78
gnu: librecad: Fix build.
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* gnu/packages/engineering.scm (librecad)[arguments]: Add phase
"patch-boost-error".
2017-11-08 16:21:54 +01:00
b72b42cf02
gnu: Add r-performanceanalytics.
...
* gnu/packages/cran.scm (r-performanceanalytics): New variable.
2017-11-08 16:21:54 +01:00
3699383e6f
gnu: Add r-xts.
...
* gnu/packages/cran.scm (r-xts): New variable.
2017-11-08 16:21:53 +01:00
5a80c15c14
gnu: Remove "open source" from descriptions.
...
All software in Guix is Free Software.
* gnu/packages/aidc.scm (libdmtx)[description]: Remove "open source" string.
* gnu/packages/firmware.scm (seabios)[description]: Likewise.
* gnu/packages/libupnp.scm (libupnp)[description]: Likewise.
* gnu/packages/maths.scm (cubicle)[description]: Likewise.
* gnu/packages/mingw.scm (mingw-w64)[description]: Likewise.
* gnu/packages/game-development.scm (openmw)[description]: Likewise.
[synopsis]: Remove "Free software".
2017-11-08 16:21:53 +01:00
88fb156288
gnu: pcb: Update to 4.0.2.
...
* gnu/packages/engineering.scm (pcb): Update to 4.0.2.
[arguments]: Add build phase "fix-check-for-display".
2017-11-08 16:21:53 +01:00
c8b38f8ea6
gnu: time: Update license.
...
* gnu/packages/time.scm (time)[license]: Change to gpl3+.
2017-11-08 10:52:09 +02:00
dd00e0919f
gnu: time: Update to 1.8.
...
* gnu/packages/time.scm (time): Update to 1.8.
[arguments]: Remove custom 'configure phase.
2017-11-08 10:49:19 +02:00
12a24ee878
gnu: Add glusterfs.
...
* gnu/packages/file-systems.scm (glusterfs): New variable.
2017-11-07 23:32:46 +01:00
2e648d2bc4
gnu: r-prabclus: Update description.
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* gnu/packages/statistics.scm (r-prabclus)[description]: Fix grammar errors.
2017-11-07 23:32:46 +01:00
14e5f6b20a
gnu: r-fdrtool: Update description.
...
* gnu/packages/statistics.scm (r-fdrtool)[description]: Use "@dfn" syntax.
2017-11-07 23:32:46 +01:00
738dda8330
gnu: Add r-bbmle.
...
* gnu/packages/cran.scm (r-bbmle): New variable.
2017-11-07 23:32:46 +01:00
7b0569c0a9
gnu: Add r-rsofia.
...
* gnu/packages/cran.scm (r-rsofia): New variable.
2017-11-07 23:32:46 +01:00
c49102ecca
gnu: Add r-hitc.
...
* gnu/packages/bioinformatics.scm (r-hitc): New variable.
2017-11-07 23:32:45 +01:00
30eb4e37c8
gnu: Add r-fithic.
...
* gnu/packages/bioinformatics.scm (r-fithic): New variable.
2017-11-07 23:32:45 +01:00
fbf5440637
gnu: Add r-sushi.
...
* gnu/packages/bioinformatics.scm (r-sushi): New variable.
2017-11-07 23:32:45 +01:00
9232cac410
gnu: Add r-vioplot.
...
* gnu/packages/cran.scm (r-vioplot): New variable.
2017-11-07 23:32:45 +01:00
3a22732cd8
gnu: Add r-sm.
...
* gnu/packages/cran.scm (r-sm): New variable.
2017-11-07 23:32:45 +01:00
2e4ce60e7c
gnu: Add r-gwascat.
...
* gnu/packages/bioinformatics.scm (r-gwascat): New variable.
2017-11-07 23:32:44 +01:00
4272000661
gnu: Add r-gviz.
...
* gnu/packages/bioinformatics.scm (r-gviz): New variable.
2017-11-07 23:32:44 +01:00
794ff347a9
gnu: Add r-gqtlstats.
...
* gnu/packages/bioinformatics.scm (r-gqtlstats): New variable.
2017-11-07 23:32:44 +01:00
7fd5f60b8f
gnu: Add r-hardyweinberg.
...
* gnu/packages/cran.scm (r-hardyweinberg): New variable.
2017-11-07 23:32:44 +01:00
10e16fa93d
gnu: Add r-mice.
...
* gnu/packages/cran.scm (r-mice): New variable.
2017-11-07 23:32:44 +01:00
66c39102e5
gnu: Add r-ldblock.
...
* gnu/packages/bioinformatics.scm (r-ldblock): New variable.
2017-11-07 23:32:44 +01:00
15f98b0d23
gnu: Add r-erma.
...
* gnu/packages/bioinformatics.scm (r-erma): New variable.
2017-11-07 23:32:43 +01:00
421c68e3f7
gnu: Add r-homo-sapiens.
...
* gnu/packages/bioinformatics.scm (r-homo-sapiens): New variable.
2017-11-07 23:32:43 +01:00
b52a866d14
gnu: Add r-org-hs-eg-db.
...
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): New variable.
2017-11-07 23:32:43 +01:00
Ben Woodcroft
Kei Kebreau
Leo Famulari
Ludovic Courtès
Hartmut Goebel
Ricardo Wurmus
Efraim Flashner