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Author SHA1 Message Date
Vinicius Monego
40a6d8eb7d
gnu: Add python-xgboost. 
* gnu/packages/machine-learning.scm (python-xgboost): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-09-25 16:06:28 -04:00
Vinicius Monego
6e5e60a20c
gnu: Add xgboost. 
* gnu/packages/machine-learning.scm (xgboost): New variable.
* gnu/packages/patches/xgboost-use-system-dmlc-core.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-09-25 16:06:28 -04:00
Vinicius Monego
7e73fc3bb9
gnu: Add dmlc-core. 
* gnu/packages/machine-learning.scm (dmlc-core): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-09-25 16:06:23 -04:00
Ludovic Courtès
d326dec811
gnu: python-pytorch: Unbundle NNPACK. 
* gnu/packages/machine-learning.scm (python-pytorch)[source]: Delete
"third_party/NNPACK".
[inputs]: Add NNPACK.
[propagated-inputs]: Remove PYTHON-PEACHPY.
* gnu/packages/patches/python-pytorch-system-libraries.patch: Remove
hunk modifying NNPACK; add hunk to allow the use of our own NNPACK.
 2021-09-24 13:48:50 +02:00
Ludovic Courtès
8df301d467
gnu: Add NNPACK. 
* gnu/packages/machine-learning.scm (nnpack): New variable.
* gnu/packages/patches/nnpack-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-09-24 13:48:49 +02:00
Ludovic Courtès
d9dfbf886d
Merge branch 'master' into core-updates-frozen 2021-09-07 14:19:08 +02:00
Marius Bakke
c4133c43c7
Merge branch 'master' into core-updates-frozen 
Conflicts:
	gnu/packages/algebra.scm
	gnu/packages/games.scm
	gnu/packages/golang.scm
	gnu/packages/kerberos.scm
	gnu/packages/mail.scm
	gnu/packages/python.scm
	gnu/packages/ruby.scm
	gnu/packages/scheme.scm
	gnu/packages/tex.scm
	gnu/packages/tls.scm
	gnu/packages/version-control.scm
 2021-08-12 00:30:27 +02:00
Marius Bakke
d2e102d4e4
Merge branch 'master' into core-updates-frozen 2021-08-01 23:23:32 +02:00
Marius Bakke
b029be2ee0
Merge branch 'master' into core-updates-frozen 
Conflicts:
	gnu/packages/bioinformatics.scm
	gnu/packages/cmake.scm
	gnu/packages/curl.scm
	gnu/packages/emacs-xyz.scm
	gnu/packages/gpodder.scm
	gnu/packages/music.scm
	gnu/packages/patches/glibc-bootstrap-system.patch
	gnu/packages/python-xyz.scm
	gnu/packages/shells.scm
	gnu/packages/statistics.scm
 2021-07-29 22:34:57 +02:00
Ludovic Courtès
630c39d8df
gnu: onnx: Change source to 'git-fetch'. 
* gnu/packages/machine-learning.scm (onnx)[source]: Change to
'git-fetch'.  Add "onnx-skip-model-downloads.patch".
[arguments]: Add 'make-test-directory-writable' phase.
* gnu/packages/patches/onnx-skip-model-downloads.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-07-31 01:03:24 +02:00
Ludovic Courtès
fa2d94b5e3
gnu: python-onnx: Rename to "onnx". 
* gnu/packages/machine-learning.scm (python-onnx): Rename to...
(onnx): ... this, and change 'name' field accordingly.
(python-onnx): New variable.
* gnu/packages/patches/python-onnx-shared-libraries.patch: Rename to...
* gnu/packages/patches/onnx-shared-libraries.patch: ... this.
* gnu/packages/patches/python-onnx-use-system-googletest.patch: Rename
to...
* gnu/packages/patches/onnx-use-system-googletest.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2021-07-31 01:03:24 +02:00
Ludovic Courtès
2b55f914c3
gnu: python-onnx: Install libonnx.so and libonnx_proto.so. 
* gnu/packages/patches/python-onnx-shared-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/machine-learning.scm (python-onnx)[source]: Use it.
[arguments]: New field.
 2021-07-31 01:03:23 +02:00
Ludovic Courtès
bb5b6b09dc
gnu: python-onnx: Delete bundled software. 
* gnu/packages/machine-learning.scm (python-onnx)[source]: Delete
the 'third_party' directory.
 2021-07-31 01:03:23 +02:00
Ludovic Courtès
3ac3ca367a
gnu: python-onnx: Move comment to the patch header. 
* gnu/packages/machine-learning.scm (python-onnx): Move patch comment to...
* gnu/packages/patches/python-onnx-use-system-googletest.patch: ... here.
 2021-07-31 01:03:23 +02:00
Ludovic Courtès
5f9dc326d9
gnu: python-onnx: Update to 1.9.0. 
* gnu/packages/machine-learning.scm (python-onnx): Update to 1.9.0.
 2021-07-31 01:03:23 +02:00
Ludovic Courtès
b402a3ec86
gnu: Add XNNPACK. 
* gnu/packages/machine-learning.scm (xnnpack): New variable.
* gnu/packages/patches/xnnpack-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-07-29 21:54:55 +02:00
Ricardo Wurmus
c9aee89abf
gnu: python-scikit-learn: Update to 0.24.2. 
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.24.2.
[arguments]: Remove trailing #t.
 2021-08-30 18:29:57 +02:00
Ricardo Wurmus
5795fbbd0f
gnu: Add python-hmmlearn. 
* gnu/packages/machine-learning.scm (python-hmmlearn): New variable.
 2021-08-27 13:37:30 +02:00
Ludovic Courtès
a537ef5e0c
gnu: python-pytorch: Remove leftover comment. 
* gnu/packages/machine-learning.scm (python-pytorch)[arguments]: Remove
leftover comment.
 2021-08-04 18:03:28 +02:00
Ludovic Courtès
dd55ad7ff8
gnu: Add python-pytorch. 
* gnu/packages/machine-learning.scm (python-pytorch): New variable.
* gnu/packages/patches/python-pytorch-runpath.patch,
gnu/packages/patches/python-pytorch-system-libraries.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
 2021-08-04 17:22:19 +02:00
Ludovic Courtès
38d319d38a
gnu: gemmlowp: Add "generic" variant. 
* gnu/packages/machine-learning.scm (gemmlowp): New variable, based on
'gemmlowp-for-tensorflow'.
(gemmlowp-for-tensorflow): Rewrite to inherit from GEMMLOWP.
[properties]: New field.
 2021-08-04 17:22:19 +02:00
Ludovic Courtès
c83d7d68f3
gnu: gloo: Honor #:tests? in 'check' phase. 
* gnu/packages/machine-learning.scm (gloo)[arguments]: In 'check' phase,
honor #:tests?.
 2021-08-04 17:22:19 +02:00
Ludovic Courtès
36f7e1d783
gnu: gloo: Update to c22a5cf. 
* gnu/packages/machine-learning.scm (gloo): Update to c22a5cf.
[inputs]: New field.
 2021-08-04 17:22:19 +02:00
Ricardo Wurmus
c1e4110971
gnu: Add tensorflow-lite. 
* gnu/packages/machine-learning.scm (tensorflow-lite): New variable.
 2021-08-04 11:09:05 +02:00
Ludovic Courtès
6da2b35b60
gnu: Add onnx-optimizer. 
* gnu/packages/machine-learning.scm (onnx-optimizer): New variable.
* gnu/packages/patches/onnx-optimizer-system-library.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-08-02 18:11:33 +02:00
Vinicius Monego
8854acd434
gnu: Add python-hyperopt. 
* gnu/packages/machine-learning.scm (python-hyperopt): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-07-25 17:56:58 +02:00
Ludovic Courtès
377e9453ca
gnu: Use 'search-input-file' when looking for *.so and *.a. 
* gnu/packages/bioinformatics.scm (sailfish)[arguments]: Use
'search-input-file' when looking for *.a and *.so.
* gnu/packages/emulators.scm (dolphin-emu): Likewise.
* gnu/packages/engineering.scm (lepton-eda): Likewise.
(pcb): Likewise.
* gnu/packages/golang.scm (go-1.4): Likewise.
(go-1.14): Likewise.
* gnu/packages/haskell.scm (ghc-7): Likewise.
* gnu/packages/irods.scm (irods): Likewise.
* gnu/packages/language.scm (python2-tegaki-pygtk): Likewise.
* gnu/packages/lisp-xyz.scm (sbcl-lzlib): Likewise.
(sbcl-cl-gobject-introspection): Likewise.
(sbcl-cl-ana): Likewise.
(sbcl-cl-libuv): Likewise.
(sbcl-cl-async): Likewise.
(sbcl-mcclim): Likewise.
(sbcl-zstd): Likewise.
(sbcl-cl-opengl): Likewise.
(sbcl-lev): Likewise.
(sbcl-cl-glfw3): Likewise.
* gnu/packages/machine-learning.scm (tensorflow): Likewise.
* gnu/packages/messaging.scm (utox): Likewise.
* gnu/packages/mpi.scm (java-openmpi): Likewise.
* gnu/packages/music.scm (jack-select): Likewise.
* gnu/packages/pascal.scm (fpc): Likewise.
* gnu/packages/python-crypto.scm (python-libnacl): Likewise.
* gnu/packages/python-xyz.scm (python-cairocffi): Likewise.
(python-pyev): Likewise.
(python-pytidylib): Likewise.
* gnu/packages/radio.scm (unixcw): Likewise.
* gnu/packages/rust.scm (rust-1.32): Likewise.
* gnu/packages/security-token.scm (opensc): Likewise.
(python-pyscard): Likewise.
* gnu/packages/selinux.scm (python-setools): Likewise.
* gnu/packages/spice.scm (libcacard): Likewise.
* gnu/packages/telephony.scm (libtgvoip): Likewise.
 2021-07-24 16:23:23 +02:00
Ludovic Courtès
1ec13efbd2
gnu: Use 'search-input-directory' for the Eigen header directory. 
* gnu/packages/bioinformatics.scm (sailfish)[arguments]: Use
'search-input-directory' when searching for Eigen headers.
* gnu/packages/bioinformatics.scm (nanopolish): Likewise.
* gnu/packages/machine-learning.scm (tensorflow): Likewise.
 2021-07-24 16:23:22 +02:00
Ludovic Courtès
0e47fcced4
Merge branch 'master' into core-updates 2021-07-18 19:50:01 +02:00
Vinicius Monego
57a747e15a
gnu: Add python-cmaes. 
* gnu/packages/machine-learning.scm (python-cmaes): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2021-07-08 16:49:06 +02:00
Marius Bakke
f034264204
Merge branch 'master' into core-updates 
Conflicts:
	gnu/local.mk
	gnu/packages/bioinformatics.scm
	gnu/packages/django.scm
	gnu/packages/gtk.scm
	gnu/packages/llvm.scm
	gnu/packages/python-web.scm
	gnu/packages/python.scm
	gnu/packages/tex.scm
	guix/build-system/asdf.scm
	guix/build/emacs-build-system.scm
	guix/profiles.scm
 2021-05-09 21:29:46 +02:00
Vinicius Monego
9605f23ff4
gnu: python-opentsne: Update to 0.5.2. 
* gnu/packages/machine-learning.scm (python-opentsne): Update to 0.5.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-04-25 14:49:57 -04:00
Vinicius Monego
34c09669c9
gnu: python-pynndescent: Update to 0.5.2. 
* gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.2.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-04-25 14:49:57 -04:00
Christopher Baines
a8448da0f4
Merge branch 'master' into core-updates 2021-03-06 00:18:30 +00:00
Vinicius Monego
df76cadf57
gnu: python-onnx: Update to 1.8.1. 
* gnu/packages/machine-learning.scm (python-onnx): Update to 1.8.1.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2021-02-21 01:26:20 +01:00
Ricardo Wurmus
96193caaa1
gnu: python-scikit-learn: Update to 0.24.1. 
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.24.1.
[propagated-inputs]: Add python-threadpoolctl.
(python2-scikit-learn)[inputs,native-inputs,propagated-inputs]: Do not
inherit these fields.
 2021-02-19 23:24:05 +01:00
Christopher Baines
e740cc6140
Merge branch 'master' into core-updates 2021-02-03 09:57:35 +00:00
Maxim Cournoyer
ef302ba9c3
gnu: kaldi-gstreamer-server: Wrap with GUIX_PYTHONPATH. 
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server):
[phases]{install}: Replace PYTHONPATH with GUIX_PYTHONPATH.
 2021-02-01 11:54:04 -05:00
Maxim Cournoyer
d42245d401
gnu: Adjust package collection to Wrap using GUIX_PYTHONPATH. 
This change was automated using:

$ git ls-files | grep .scm | \
  xargs sed 's/(getenv "PYTHONPATH")/(getenv "GUIX_PYTHONPATH")/' -i

$ git ls-files | grep .scm | \
  xargs sed 's/`("PYTHONPATH"/`("GUIX_PYTHONPATH"/' -i

* gnu/packages/admin.scm (nmap):
(dstat): Wrap using GUIX_PYTHONPATH.
* gnu/packages/audio.scm (jack-2):
(carla): Likewise.
* gnu/packages/benchmark.scm (fio): Likewise.
* gnu/packages/bioinformatics.scm (couger): Likewise.
(gess, find-circ, filtlong, nanopolish): Likewise.
* gnu/packages/cdrom.scm (cdemu-client): Likewise.
* gnu/packages/chemistry.scm (avogadro): Likewise.
* gnu/packages/connman.scm (econnman): Likewise.
* gnu/packages/cups.scm (hplip): Likewise.
* gnu/packages/debug.scm (scanmem): Likewise.
* gnu/packages/display-managers.scm (lightdm): Likewise.
* gnu/packages/ebook.scm (cozy): Likewise.
* gnu/packages/education.scm (anki): Likewise.
* gnu/packages/engineering.scm (kicad, volk, freecad): Likewise.
* gnu/packages/game-development.scm (renpy): Likewise.
* gnu/packages/games.scm (roguebox-adventures)
(seahorse-adventures, kajongg): Likewise.
* gnu/packages/gimp.scm (gimp, glimpse): Likewise.
* gnu/packages/glib.scm (itstool): Likewise.
* gnu/packages/gnome.scm (gnome-music, gtg, rhythmbox): Likewise.
(eolie, d-feet, gedit, caribou, gnome-shell, authenticator)
(gnome-todo, orca, passwordsafe, terminator, setzer)
(libratbag, komikku): Likewise.
* gnu/packages/gps.scm (gpsd): Likewise.
* gnu/packages/gtk.scm (gtk-doc): Likewise.
* gnu/packages/ibus.scm (ibus, ibus-libpinyin, ibus-anthy)
(ibus-libhangul): Likewise.
* gnu/packages/inkscape.scm (inkscape-1.0): Likewise.
* gnu/packages/linux.scm (bcc): Likewise.
* gnu/packages/mail.scm (notifymuch): Likewise.
* gnu/packages/maths.scm (units): Likewise.
* gnu/packages/music.scm (solfege): Likewise.
* gnu/packages/networking.scm (blueman): Likewise.
* gnu/packages/patchutils.scm (patchwork): Likewise.
* gnu/packages/photo.scm (rapid-photo-downloader, entangle): Likewise.
* gnu/packages/plotutils.scm (asymptote): Likewise.
* gnu/packages/presentation.scm (presentty): Likewise.
* gnu/packages/screen.scm (byobu): Likewise.
* gnu/packages/storage.scm (ceph): Likewise.
* gnu/packages/syndication.scm (liferea): Likewise.
* gnu/packages/task-management.scm (blanket): Likewise.
* gnu/packages/text-editors.scm (manuskript): Likewise.
* gnu/packages/version-control.scm (gitless, cgit, git-when-merged)
(git-imerge): Likewise.
* gnu/packages/video.scm (pitivi): Likewise.
* gnu/packages/virtualization.scm (criu): Likewise.
* gnu/packages/xfce.scm (catfish): Likewise.
 2021-02-01 11:54:01 -05:00
Maxim Cournoyer
e3bc7881f2
gnu: ghmm: Do not set PYTHONPATH. 
* gnu/packages/machine-learning.scm (ghmm): Remove trailing #t.
[phases]: Do not reorder the check phase after the install phase.
{fix-PYTHONPATH}: Remove phase.
 2021-02-01 11:53:48 -05:00
Maxim Cournoyer
4327f06ed5
gnu: tensorflow: Do not alter PYTHONPATH. 
* gnu/packages/machine-learning.scm (tensorflow)[phases]: Delete trailing #t.
{fix-python-build}: Do not alter PYTHONPATH.
 2021-02-01 11:53:48 -05:00
Efraim Flashner
3d72867e10
gnu: Add python-threadpoolctl. 
* gnu/packages/machine-learning.scm (python-threadpoolctl): New variable.
 2021-01-31 16:31:32 +02:00
Maxim Cournoyer
dbcd205050
gnu: python-xyz: Move a few modules to (gnu packages python-build). 
* gnu/packages/python-xyz.scm (python-pep517): Inherit from
python-pep517-bootstrap.  Remove the inherited common fields.
(python-poetry-core, python-wheel)
(python-toml): Move to ...
* gnu/packages/python-build.scm: ... here, a new module.
(python-pep517-bootstrap): New package.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register the new module.
 2021-01-27 08:05:42 -05:00
Maxim Cournoyer
13bb41f814
gnu: python-xyz: Move a few modules to (gnu packages python-build). 
* gnu/packages/python-xyz.scm (python-pep517): Inherit from
python-pep517-bootstrap.  Remove the inherited common fields.
(python-poetry-core, python-wheel)
(python-toml): Move to ...
* gnu/packages/python-build.scm: ... here, a new module.
(python-pep517-bootstrap): New package.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register the new module.
 2021-01-15 16:33:07 -05:00
Vinicius Monego
7ae66d9c12
gnu: python-onnx: Update to 1.8.0. 
* gnu/packages/machine-learning.scm (python-onnx): Update to 1.8.0.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2020-12-12 21:38:48 +01:00
Vinicius Monego
6a5da0d034
gnu: Add python-opentsne. 
* gnu/packages/machine-learning.scm (python-opentsne): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-11-25 18:38:00 -05:00
Vinicius Monego
8cd10a76b8
gnu: Add python-pynndescent. 
* gnu/packages/machine-learning.scm (python-pynndescent): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-11-25 18:38:00 -05:00
Maxim Cournoyer
5f37d7e38e
gnu: python-keras: Fix build. 
Fixes <https://issues.guix.gnu.org/39562>.

* gnu/packages/machine-learning.scm (python-keras)[phases]{check}: Apply
upstream fix to test_topology.py.  Skip the failing test_selu test.

Reported-by: Pierre Neidhardt <mail@ambrevar.xyz>
 2020-10-05 01:49:45 -04:00
Maxim Cournoyer
01f3f0e928
gnu: ocaml-mcl: Fix build. 
It was failing on a /bin/sh occurrence patched twice in the configure script:

sh: ./configure:/gnu/store/...-bash-minimal-5.0.16/gnu/store/...-bash-minimal-5.0.1:bad
interpreter: No such file or directory

* gnu/packages/machine-learning.scm (ocaml-mcl)[phases]{patch-paths}: Do not
patch the configure script.
 2020-10-02 21:47:28 -04:00
zimoun
d3d38bd8f1
gnu: r-adaptivesparsity: Move to (gnu packages cran). 
* gnu/packages/machine-learning.scm (r-adaptivesparsity): Move from here...
* gnu/packages/cran.scm (r-adaptivesparsity): ...to here.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2020-09-11 21:48:38 +02:00