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127707 Commits (e0885fcfbb12942f566a5ce9a4f3199a4d191723)

Author SHA1 Message Date
Evgeny Pisemsky d987b75618
gnu: Add monsterid. 
* gnu/packages/web.scm (monsterid): New variable.

Change-Id: I68dc167cb766f730bfa4108c96a70f59a9aec222
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-11-15 18:29:38 +01:00
Troy Figiel 416ae9ad89
gnu: Add python-tdda. 
* gnu/packages/python-science.scm (python-tdda): New variable.

Change-Id: I456aa236b3348e5b990289d8a381c2d5276a12f1
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-11-15 18:29:38 +01:00
Troy Figiel 7c9e264849
gnu: python-types-pytz: Update to 2023.3.1.1. 
* gnu/packages/python-xyz.scm (python-types-pytz): Update to 2023.3.1.1.

Change-Id: Ie06158d386e8648ee2aaef4d8b4aee1ee340ba2b
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-11-15 18:29:38 +01:00
André Batista cb9ecbef8b
gnu: tor: Update to 0.4.8.9 [security fixes]. 
* gnu/packages/tor.scm (tor): Update to 0.4.8.9.

This release fixes two high severity security vulnerabilities.
The first one affects client connections to Guard relays and the
other one affects Onion Services (TROVE-2023-006).

See https://gitlab.torproject.org/tpo/core/tor/-/issues/40876 and
https://gitlab.torproject.org/tpo/core/tor/-/issues/40883

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-11-15 18:29:38 +01:00
Skylar Chan 9524d8cd0b
gnu: whoogle-search: Update to 0.8.3. 
* gnu/packages/python-web.scm (whoogle-search): Update to 0.8.3.
[propagated-inputs]: Remove python-attrs, python-cachelib, python-certifi, python-cffi,
python-chardet, python-click, python-flask-session, python-idna,
python-itsdangerous, python-jinja2, python-markupsafe,
python-more-itertools, python-packaging, python-pluggy, python-py,
python-pycodestyle, python-pycparser, python-pyopenssl,
python-pyparsing, python-pysocks, python-dateutil, python-soupsieve,
python-urllib3, python-wcwidth, and python-werkzeug.

Change-Id: Ie665b548cdd996fa74e70313b02b9b5c2a0d75d2
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-11-15 18:29:38 +01:00
Tomas Volf 3493832260
build-system/guile: Add target-guile-scm+go procedure. 
The paths to .scm and .go files can be constructed given a guile version and a
base directory.  However it is few lines of code that needs to be copy&pasted.
This new procedure returns both of them reducing the maintenance cost.

* guix/build/guile-build-system.scm (target-guile-scm+go): New procedure.

Change-Id: I58615f2cfe0ec1e58d3fbb47b738ed5dce1bb252
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2023-11-15 18:29:37 +01:00
Ludovic Courtès 69d9a02094
locate: Accept ‘--clear’ without additional arguments. 
Fixes a bug whereby ‘guix locate --clear’ would end with the “no files
to search for” error.

Fixes <https://issues.guix.gnu.org/66799>.

* guix/scripts/locate.scm (guix-locate): Do not emit “no files to search
for” error when 'clear? is set in OPTS.
* tests/guix-locate.sh: Test it.

Reported-by: Maciej Kalandyk <m.kalandyk@outlook.com>
Change-Id: Ib8fa125c18481d7f5408bd89df9503713527641d
 2023-11-15 18:29:37 +01:00
Rovanion Luckey 3fe31e37a9
gnu: musescore: Update to 4.1.1. 
* gnu/packages/music.scm (musescore): Update to 4.1.1.
[source]: Remove deletion of “thirdparty/freetype” from snippet.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
Change-Id: If1c8e6ddd5bfa30c24ee0e8ef29c945242905d74
 2023-11-15 18:29:37 +01:00
Ludovic Courtès 26a403f357
gnu: psm2: Update Git tag name. 
The tag was apparently renamed.

* gnu/packages/linux.scm (psm2)[source]: Change tag name.

Change-Id: Icfeb9e6f567d03f00f1b7b1d25dbd89f8528dc34
 2023-11-15 18:29:37 +01:00
Efraim Flashner d1b786fe62
gnu: pandoc: Install bash completions, man page. 
* gnu/packages/haskell-xyz.scm (pandoc)[arguments]: Add a phase to
install the bash completions and the man page.

Change-Id: I3e5c18971e06cc3b69ed49a15ab8da11e809e532
 2023-11-15 18:03:02 +02:00
Efraim Flashner 4c5cac28c3
gnu: ghc-pandoc: Skip failing tests from i686-linux. 
* gnu/packages/haskell-xyz.scm (ghc-pandoc)[source]: Adjust snippet to
remove two tests.

Change-Id: I05476c0bc2f50328efb30ce26d446850321bad6d
 2023-11-15 18:03:02 +02:00
Efraim Flashner 59fdbbb717
gnu: ghc-persistent: Fix build on i686-linux. 
* gnu/packages/haskell-xyz.scm (ghc-persistent)[source]: Add patch.
* gnu/packages/patches/ghc-persistent-fix-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Change-Id: I1b2c8419f3136d6c9df772d7c7abdc83a80d6112
 2023-11-15 18:03:02 +02:00
Efraim Flashner 879503464f
gnu: ghc-memory: Fix building on i686-linux. 
* gnu/packages/haskell-xyz.scm (ghc-memory)[source]: Add patch.
* gnu/packages/patches/ghc-memory-fix-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Change-Id: I8dc7a13a94ce37021ad402b4e2d0cd061220f670
 2023-11-15 18:03:02 +02:00
Efraim Flashner 8c7a245a26
gnu: ghc-bloomfilter: Update to 2.0.1.2. 
* gnu/packages/haskell-xyz.scm (ghc-bloomfilter): Update to 2.0.1.2.
[source]: Remove patch.  Add snippet to fix building on 32-bit systems.
[arguments]: Remove field.
[home-page]: Update to new home-page.
* gnu/packages/patches/ghc-bloomfilter-ghc9.2.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Change-Id: Ie61d079b001f804fd28acaca2acd3127b88935d4
 2023-11-15 18:03:02 +02:00
Efraim Flashner e211abfe9f
gnu: ghc-base64: Skip tests on i686-linux. 
* gnu/packages/haskell-xyz.scm (ghc-base64)[arguments]: Skip tests when
building for i686-linux.

Change-Id: I2de264eb0a0b1ae3d6ca1e29c9b1dce589104aa1
 2023-11-15 18:03:02 +02:00
Efraim Flashner 8448e0befa
gnu: ghc-base64: Update to Cabal revision 4. 
* gnu/packages/haskell-xyz.scm (ghc-base64)[arguments]: Update to Cabal
revision 4.
[synopsis]: Satisfy linter.

Change-Id: I3e234f85371865dfc45a4f004b442209fd68091a
 2023-11-15 18:03:02 +02:00
Efraim Flashner 4c46dc9a4a
gnu: ghc-basement: Fix build on i686-linux. 
* gnu/packages/haskell-xyz.scm (ghc-basement)[source]: Add patch.
* gnu/packages/patches/ghc-basement-fix-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Change-Id: Ife75c651d4b9cffa14ec1c5165a9254cfee3f09f
 2023-11-15 18:03:01 +02:00
Efraim Flashner bc71be1a1d
gnu: curl: Skip failing test on arm machines. 
* gnu/packages/curl.scm (curl)[arguments]: Adjust custom 'check phase to
skip a test on armhf-linux and aarch64-linux.

Change-Id: I26fcb8c911a412c9196b759caefb6a003a241b6b
 2023-11-15 18:02:39 +02:00
Efraim Flashner 7e6580670b
gnu: tbb: Fix building on armhf-linux. 
* gnu/packages/tbb.scm (tbb)[arguments]: Add configure-flag when
building for armhf-linux to run a lighter test suite.  Add a phase when
building for armhf-linux to skip a test.

Change-Id: Ic730c82f30357d3a55e92098114a9dc2a6d062e9
 2023-11-15 17:14:19 +02:00
Efraim Flashner 8de6ed6913
gnu: mimalloc: Update to 2.1.2. 
* gnu/packages/c.scm (mimalloc): Update to 2.1.2.

Change-Id: I20ff922250f57beabb427d72e82579e0059fd4f2
 2023-11-15 17:14:19 +02:00
Efraim Flashner 45ffa54bc3
gnu: mimalloc: Fix building on powerpc-linux. 
* gnu/packages/c.scm (mimalloc)[arguments]: When building for
powerpc-linux add a configure-flag to use libatomic.

Change-Id: I41062686186640bc4c685a0ee5de1e613040dfb9
 2023-11-15 17:14:19 +02:00
Efraim Flashner 9d01a83b2e
gnu: mold: Update to 2.3.2. 
* gnu/packages/mold.scm (mold): Update to 2.3.2.
[source]: Add snippet to fix i686-linux detection.
[arguments]: Add a phase to skip a test requiring a newer version of
tbb.  Add a configure-flag to enable tests.

Change-Id: I9bc06b13c41b236844df3074206bb035ecd2bd06
 2023-11-15 17:14:16 +02:00
Ricardo Wurmus 66132d6a20
gnu: r-ranger: Update to 0.16.0. 
* gnu/packages/statistics.scm (r-ranger): Update to 0.16.0.

Change-Id: Ibc45e025ae4b16e4d04da2ae3aa1494aec35594b
 2023-11-15 15:55:22 +01:00
Ricardo Wurmus 903718659a
gnu: r-lme4: Update to 1.1-35.1. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-35.1.

Change-Id: I2806562c05111df1a8c61e82745afbc1264dec4e
 2023-11-15 15:55:22 +01:00
Ricardo Wurmus 1c839037e3
gnu: r-matrixmodels: Update to 0.5-3. 
* gnu/packages/statistics.scm (r-matrixmodels): Update to 0.5-3.

Change-Id: I0f66397c05d9877a7d8534585d534a7545eea532
 2023-11-15 15:55:22 +01:00
Ricardo Wurmus 66f89ec647
gnu: r-rcppeigen: Update to 0.3.3.9.4. 
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.9.4.
[propagated-inputs]: Remove r-matrix.

Change-Id: I48b3376c20b523e63fe392aa070d03872d19a34a
 2023-11-15 15:55:22 +01:00
Ricardo Wurmus fd7c535d1b
gnu: r-matrixstats: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 1.1.0.

Change-Id: I27f701d83b7dbfcc54fde2701890c69dbc5b9384
 2023-11-15 15:55:22 +01:00
Ricardo Wurmus bb0bc7990b
gnu: r-xml: Update to 3.99-0.15. 
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.15.

Change-Id: Idb8ad04a092f49eda26e78398583cdbb234134c8
 2023-11-15 15:55:22 +01:00
Ricardo Wurmus 1ab5ea9f77
gnu: r-rcurl: Update to 1.98-1.13. 
* gnu/packages/statistics.scm (r-rcurl): Update to 1.98-1.13.

Change-Id: I6f03bb2a7bb94dfe61233af13fe283193896e9d4
 2023-11-15 15:55:22 +01:00
Ricardo Wurmus afef5bce14
gnu: r-rsqlite: Update to 2.3.3. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.3.3.

Change-Id: If922cd1e15333ec5b1d9c50380958e9fd4dd7548
 2023-11-15 15:55:22 +01:00
Ricardo Wurmus fbc89cb64a
gnu: r-rprojroot: Update to 2.0.4. 
* gnu/packages/statistics.scm (r-rprojroot): Update to 2.0.4.

Change-Id: I4549c16c00f41d9d96894e5e1f017ad718c211c8
 2023-11-15 15:55:22 +01:00
Ricardo Wurmus e318eae0cc
gnu: r-rcpparmadillo: Update to 0.12.6.6.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.6.6.0.

Change-Id: Iab08f00f0522fdecf9a39f08f5418a978afbb0df
 2023-11-15 15:55:22 +01:00
Ricardo Wurmus 5f66bbc254
gnu: r-plotrix: Update to 3.8-4. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.8-4.

Change-Id: I7d1928c74ade7e3b6324e382f1d53a13ad19ab08
 2023-11-15 15:55:22 +01:00
Ricardo Wurmus 2496d54094
gnu: r-rlang: Update to 1.1.2. 
* gnu/packages/statistics.scm (r-rlang): Update to 1.1.2.

Change-Id: I97386e0022255330849001aa8bda830d3c8e7bf3
 2023-11-15 15:55:22 +01:00
Ricardo Wurmus 887331d1e1
gnu: r-evaluate: Update to 0.23. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.23.

Change-Id: Ic174acc4efe7fa052cb1edaf9fd48410ee1ee00a
 2023-11-15 15:55:22 +01:00
Ricardo Wurmus a937f15403
gnu: r-stringr: Update to 1.5.1. 
* gnu/packages/statistics.scm (r-stringr): Update to 1.5.1.

Change-Id: Icdd9bef899b5cdc80c045226124e87de9cdfa222
 2023-11-15 15:55:22 +01:00
Ricardo Wurmus 91c4df4398
gnu: r-stringi: Update to 1.8.1. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.8.1.

Change-Id: I54524b57c6a1f3ff9cee826a78c2e505aeb17ebd
 2023-11-15 15:55:22 +01:00
Ricardo Wurmus e59bde0a7c
gnu: r-matrix: Update to 1.6-3. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.6-3.

Change-Id: If89e659ecd8826a45e1147d9c2e620f4059db214
 2023-11-15 15:55:22 +01:00
Ricardo Wurmus 5f92b0d564
gnu: r-fasterize: Update to 1.0.5. 
* gnu/packages/cran.scm (r-fasterize): Update to 1.0.5.
[propagated-inputs]: Remove r-sp; add r-wk.

Change-Id: Ie00a7743d46c330233abf2a5bd04c4ff3a47522e
 2023-11-15 15:55:22 +01:00
Ricardo Wurmus 9b557b121e
gnu: r-paws-common: Update to 0.6.4. 
* gnu/packages/cran.scm (r-paws-common): Update to 0.6.4.

Change-Id: If1f80809d172f00e80f638cb600948d44c7f5a84
 2023-11-15 15:55:22 +01:00
Ricardo Wurmus cc93193655
gnu: r-clustree: Update to 0.5.1. 
* gnu/packages/cran.scm (r-clustree): Update to 0.5.1.

Change-Id: If2d5a6cf33eab9f820c7a4fccd26aa1763f96e28
 2023-11-15 15:55:22 +01:00
Ricardo Wurmus 5fc4cb0d85
gnu: r-bbotk: Update to 0.7.3. 
* gnu/packages/cran.scm (r-bbotk): Update to 0.7.3.

Change-Id: I5e50ff5b3ac039fbe47d8093088e3e59a2bd8803
 2023-11-15 15:55:22 +01:00
Ricardo Wurmus b4cf3fde74
gnu: r-seurat: Update to 5.0.0. 
* gnu/packages/cran.scm (r-seurat): Update to 5.0.0.
[propagated-inputs]: Add r-fastdummies, r-generics, r-lifecycle, r-rcpphnsw, and
r-rspectra.

Change-Id: If728a0340cdeec5c2d5671025711a2ed42ee265b
 2023-11-15 15:55:22 +01:00
Ricardo Wurmus 352ccf5122
gnu: r-warp: Update to 0.2.1. 
* gnu/packages/cran.scm (r-warp): Update to 0.2.1.

Change-Id: Iee92904e0341b7a4cfe4947e33b2d5b6c76dcab2
 2023-11-15 15:55:21 +01:00
Ricardo Wurmus a472decb25
gnu: r-rfast: Update to 2.1.0. 
* gnu/packages/cran.scm (r-rfast): Update to 2.1.0.

Change-Id: Ifd1d7459d2293bd2ab26054c469c739025cb7f7a
 2023-11-15 15:55:21 +01:00
Ricardo Wurmus 64ab52eb4f
gnu: r-qgraph: Update to 1.9.8. 
* gnu/packages/cran.scm (r-qgraph): Update to 1.9.8.

Change-Id: Ibfefb7aed42bd935806dc2f40d2b131cdf97eb3c
 2023-11-15 15:55:21 +01:00
Ricardo Wurmus ec5a1c42ca
gnu: r-openmx: Update to 2.21.10. 
* gnu/packages/cran.scm (r-openmx): Update to 2.21.10.

Change-Id: I7d4216b5e0394cd89e1d6aaf602e601c224d125d
 2023-11-15 15:55:21 +01:00
Ricardo Wurmus a18e274401
gnu: r-actuar: Update to 3.3-4. 
* gnu/packages/cran.scm (r-actuar): Update to 3.3-4.

Change-Id: I5ffe7de887122cd4aeb6fd7027d4c94ae1b9867e
 2023-11-15 15:55:21 +01:00
Ricardo Wurmus 1223000d14
gnu: r-actcd: Update to 1.3-0. 
* gnu/packages/cran.scm (r-actcd): Update to 1.3-0.

Change-Id: Ie8befdde95bef6fc1b9be8c7d55a1720f74ed678
 2023-11-15 15:55:21 +01:00
Ricardo Wurmus 3dab9524e1
gnu: r-pracma: Update to 2.4.4. 
* gnu/packages/cran.scm (r-pracma): Update to 2.4.4.

Change-Id: I079366cc3ab7923a80033de4e9fe3642bd272523
 2023-11-15 15:55:21 +01:00