67aced6323
gnu: r-withr: Update to 2.2.0.
...
* gnu/packages/statistics.scm (r-withr): Update to 2.2.0.
[native-inputs]: Add r-knitr.
2020-04-28 08:44:02 +02:00
7ef5f77b91
gnu: r-xml2: Update to 1.3.2.
...
* gnu/packages/statistics.scm (r-xml2): Update to 1.3.2.
2020-04-28 08:44:01 +02:00
568d1d7bfc
gnu: r-dbplyr: Update to 1.4.3.
...
* gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.3.
[propagated-inputs]: Add r-lifecycle.
[native-inputs]: Add r-knitr.
2020-04-28 08:44:01 +02:00
666d97964a
gnu: r-tibble: Update to 3.0.1.
...
* gnu/packages/statistics.scm (r-tibble): Update to 3.0.1.
2020-04-28 08:44:01 +02:00
288ab9039b
gnu: r-foreign: Update to 0.8-78.
...
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-78.
2020-04-28 08:44:01 +02:00
c1dc7858d7
gnu: r-with-tests, r-minimal: Update to 4.0.0.
...
* gnu/packages/statistics.scm (r-with-tests, r-minimal): Update to 4.0.0.
(r-with-tests)[arguments]: Add phase "set-locales".
[native-inputs]: Add texlive-ae, texlive-inconsolata, and
texlive-latex-xkeyval to texlive-union.
[inputs]: Replace pcre with pcre2.
2020-04-28 08:44:01 +02:00
89909327d0
gnu: stellarium: Update to 0.20.1.
...
* gnu/packages/astronomy.scm (stellarium): Update to 0.20.1.
2020-04-28 00:23:35 +02:00
619f9181a3
doc: Update url to singularity before link rot occurs.
...
* doc/guix.texi: Update url to singularity before link rot occurs.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-27 23:29:40 +02:00
47f82b310e
guix: edit: Make nano the default editor.
...
* guix/scripts/edit.scm: Make nano the default editor.
Nano is sensible default, as it is installed by base system.
For development, user can set custom value for $EDITOR.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-04-27 23:29:40 +02:00
5fbc753ab5
import: crate: Gracefully handle non-existent crates.
...
Fixes <https://bugs.gnu.org/40891 >.
Reported by Hartmut Goebel <h.goebel@crazy-compilers.com>.
* guix/import/crate.scm (crate->guix-package): Wrap value of
'version-number' and 'version*' in (and crate ...).
2020-04-27 23:29:40 +02:00
5dfe02c607
tests: Remove trailing commas in JSON tests.
...
These commas are rejected by Guile-JSON 3.5.0.
* tests/crate.scm (test-foo-dependencies)
(test-root-dependencies, test-intermediate-1-dependencies)
(test-intermediate-2-dependencies): Remove trailing commas.
* tests/gem.scm (test-bar-json): Likewise.
* tests/pypi.scm (test-json): Likewise.
2020-04-27 23:29:40 +02:00
78799a6fdc
gnu: Update minimap2 to 2.17.
...
* gnu/packages/bioinformatics.scm (minimap2): Update to 2.17.
2020-04-27 21:34:10 +02:00
693d0fffc8
gnu: Add sbcl-stumpwm-swm-gaps.
...
* gnu/packages/wm.scm (sbcl-stumpwm-swm-gaps): New variable.
2020-04-27 22:21:35 +03:00
bb6d9e2633
gnu: tarsplitter: Fix typo in description (spilt/split).
...
* gnu/packages/compression.scm (tarsplitter)[description]: Fix typo.
2020-04-27 20:43:32 +02:00
f4f4aa628a
doc: guix: Fix grammar in "Debugging Build Failures"
...
* doc/guix.texi (Debugging Build Failures): Fix grammar.
Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-04-27 18:24:19 +02:00
58a361fef4
gnu: Add wf-recorder.
...
* gnu/packages/video.scm (wf-recorder): New variable.
Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-04-27 18:22:56 +02:00
c53886a55a
gnu: ktsuss: Use setuid "su" and "sudo" commands.
...
This has ktsudo actually gain root access.
* gnu/packages/admin.scm (ktsuss)[arguments]: Instead of <sudo>/bin/{su,sudo}
file names, use the setuid' verrsions.
2020-04-27 18:17:24 +02:00
138896e1ea
gnu: herbstluftwm: Update to 0.8.1
...
* gnu/packages/wm.scm: herbstluftwm: Update to 0.8.1
Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
2020-04-27 18:05:11 +02:00
f38ba7b65d
gnu: fldigi: Update to 4.1.12.
...
* gnu/packages/radio.scm (fldigi): Update to 4.1.12.
2020-04-27 16:54:34 +02:00
2ef4d273d1
file-systems: mount the PID cgroup filesystem.
...
* gnu/system/file-systems.scm (%control-groups): Add "pids".
* gnu/services/docker.scm (docker-shepherd-service): Resolve a TODO.
This has allowed me to make a specific configuration of nsjail work.
2020-04-27 14:14:47 +02:00
639ae3f20b
gnu: Add python-scikit-rebate.
...
* gnu/packages/machine-learning.scm (python-scikit-rebate): New variable.
2020-04-27 13:54:43 +02:00
ccf70a80a1
gnu: Add python-deeptools.
...
* gnu/packages/bioinformatics.scm (python-deeptools): New variable.
2020-04-27 13:43:05 +02:00
c43edf6f30
gnu: Add python-deeptoolsintervals.
...
* gnu/packages/bioinformatics.scm (python-deeptoolsintervals): New variable.
2020-04-27 13:39:25 +02:00
4c24186ae0
gnu: Add python-bitarray.
...
* gnu/packages/python-xyz.scm (python-bitarray): New variable.
2020-04-27 13:09:02 +02:00
06fc1a5142
gnu: Add r-cummerbund.
...
* gnu/packages/bioconductor.scm (r-cummerbund): New variable.
2020-04-27 11:46:08 +02:00
91370829f4
gnu: Add r-inum.
...
* gnu/packages/cran.scm (r-inum): New variable.
2020-04-27 11:15:38 +02:00
415176e89d
gnu: Add r-ggpmisc.
...
* gnu/packages/cran.scm (r-ggpmisc): New variable.
2020-04-27 11:05:49 +02:00
0c0ef9c5a6
gnu: Add r-coverageview.
...
* gnu/packages/bioconductor.scm (r-coverageview): New variable.
2020-04-27 10:57:22 +02:00
d4f86c8b66
gnu: Add peek.
...
* gnu/packages/video.scm (peek): New variable.
2020-04-27 10:46:12 +02:00
c170a15996
gnu: emacs-org-reveal: Fix syntax error in description.
...
* gnu/packages/emacs-xyz.scm (emacs-org-reveal)[description]: Fix Texinfo
syntax error.
2020-04-27 10:45:51 +02:00
320dd1195e
gnu: Add texlive-inconsolata.
...
* gnu/packages/tex.scm (texlive-inconsolata): New variable.
2020-04-27 10:45:51 +02:00
8ce240fdbf
gnu: Add r-bsgenome-hsapiens-ucsc-hg38.
...
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): New variable.
2020-04-27 10:43:51 +02:00
cb1ab0352b
gnu: Add r-karyoploter.
...
* gnu/packages/bioconductor.scm (r-karyoploter): New variable.
2020-04-27 10:37:42 +02:00
e658838c62
gnu: Add r-bezier.
...
* gnu/packages/cran.scm (r-bezier): New variable.
2020-04-27 10:28:50 +02:00
e8d435f7a2
gnu: Add r-ideoviz.
...
* gnu/packages/bioconductor.scm (r-ideoviz): New variable.
2020-04-27 10:24:20 +02:00
df6c7f0487
gnu: Add r-ecp.
...
* gnu/packages/cran.scm (r-ecp): New variable.
2020-04-27 10:18:48 +02:00
8521d93854
gnu: Add r-reordercluster.
...
* gnu/packages/cran.scm (r-reordercluster): New variable.
2020-04-27 10:11:21 +02:00
9c63165d9e
gnu: liblinphone: Move documentation and tester to separate outputs.
...
* gnu/packages/linphone.scm (liblinphone)[outputs]: Add a "doc" and "tester"
outputs.
[phases]: Add a separate-outputs phase. Move the
glib-or-gtk-compile-schemas and glib-or-gtk-wrap phases after it.
2020-04-27 00:54:44 -04:00
1ae4325734
gnu: liblinphone: Fix the input type of some dependencies.
...
Libraries being linked to such as libxml2, libiconv and zlib should appear as
'inputs' rather than 'native-inputs'.
* gnu/packages/linphone.scm (liblinphone)[native-inputs]: Move libiconv,
libxml2 and zlib to...
[inputs]: ...here. Move eudev, python-pystache and python-six to
native-inputs.
2020-04-27 00:54:30 -04:00
8472c26c25
gnu: liblinphone: Remove hicolor-icon-theme and murrine inputs.
...
Icon themes and theme engines are best left for the users to select and
install themselves.
* gnu/packages/linphone.scm (liblinphone)[inputs]: Remove hicolor-icon-theme.
[propagated-inputs]: Remove murrine.
2020-04-27 00:54:30 -04:00
3b177a6c33
gnu: Add loadable module to wireguard-linux-compat.
...
* gnu/packages/vpn.scm (wireguard-linux-compat)[build-system]: Replace
'gnu-build-system' by 'linux-module-build-system'.
[outputs]: Add 'kernel-patch'.
[arguments]: Adjust the build system. Add phases 'change-directory' and
'reset-cwd'. Rename phases 'build' to 'build-patch' and 'install' to
'install-patch'.
[description]: Mention the loadable module.
Signed-off-by: Leo Famulari <leo@famulari.name>
2020-04-26 18:24:28 -04:00
ccbc427f9a
channels: Use a declarative profile.
...
* guix/channels.scm (package-cache-file): Use 'profile' instead of
'profile-derivation'.
2020-04-26 22:49:49 +02:00
0e5c2d5e14
services: system: Initial entries are non-monadic.
...
* gnu/system.scm (operating-system-directory-base-entries): Return a
regular, non-monadic value.
* gnu/services.scm (system-derivation): Adjust accordingly.
* gnu/system/linux-container.scm (container-essential-services): Likewise.
2020-04-26 22:49:49 +02:00
45c84c8f6f
pack: Use a declarative profile.
...
* guix/scripts/pack.scm (guix-pack): Use a declarative profile instead
of 'profile-derivation'.
2020-04-26 22:49:48 +02:00
45bd91334f
services: profile: Use a declarative profile.
...
* gnu/services.scm (packages->profile-entry): Use 'profile' instead of
'profile-derivation'.
2020-04-26 22:49:48 +02:00
cda751105e
system: 'operating-system-directory-base-entries' uses 'profile'.
...
* gnu/system.scm (operating-system-directory-base-entries): Use a
declarative profile instead of 'profile-derivation'.
2020-04-26 22:49:48 +02:00
ef674a24c5
profiles: Add lowerable <profile> record type.
...
* guix/profiles.scm (<profile>): New record type.
* tests/profiles.scm ("<profile>"): New test.
2020-04-26 22:49:48 +02:00
1408e2abeb
gnu: r-snplocs-hsapiens-dbsnp144-grch37: Fix description.
...
* gnu/packages/bioconductor.scm: Use two spaces after ending a sentence.
2020-04-26 21:47:19 +02:00
63daca1e92
gnu: Add r-snplocs-hsapiens-dbsnp144-grch37.
...
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): New
variable.
2020-04-26 21:34:49 +02:00
b58a22e5b7
gnu: Add hackneyed-x11-cursors.
...
* gnu/packages/xorg.scm (hackneyed-x11-cursors): New variable.
2020-04-26 15:32:10 -04:00
Ricardo Wurmus
Björn Höfling
operator.name
Raghav Gururajan
Ludovic Courtès
Roel Janssen
Oleg Pykhalov
Vincent Legoll
TomZ
Alex McGrath
Boris A. Dekshteyn
Guillaume Le Vaillant
Jakub Kądziołka
Maxim Cournoyer
Brice Waegeneire