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Author SHA1 Message Date
Maxim Cournoyer
9a550ba8c9
gnu: Remove python2-autograd. 
* gnu/packages/machine-learning.scm (python2-autograd): Delete variable.
 2022-05-31 14:52:31 -04:00
Maxim Cournoyer
0837d0aaf1
gnu: Remove python2-fastlmm. 
* gnu/packages/machine-learning.scm (python2-fastlmm): Delete variable.
 2022-05-31 14:52:25 -04:00
Maxim Cournoyer
1c865e8e1c
gnu: Remove python2-scikit-learn. 
* gnu/packages/machine-learning.scm (python2-scikit-learn): Delete variable.
(python-scikit-learn)[properties]: Remove the python2-variant property.
 2022-05-31 14:52:24 -04:00
Maxim Cournoyer
34106c85d8
gnu: python-umap-learn: Update to 0.5.3. 
* gnu/packages/machine-learning.scm (python-umap-learn): Update to 0.5.3.
[source]: Use git.
[arguments]: New field.
[native-inputs]: Delete python-joblib and python-nose.  Add python-pytest.
[propagated-inputs]: Add python-pynndescent and python-tqdm.
[synopsis]: Fix indentation.
[description]: Fix typo and re-indent.
 2022-05-12 12:45:55 -04:00
Maxim Cournoyer
06b0512260
gnu: python-pynndescent: Update to 0.5.6. 
* gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.6.
[phases]{check}: Skip the test_weighted_minkowski test.
[native-inputs, propagated-inputs]: Re-indent.
 2022-05-12 12:45:55 -04:00
Maxim Cournoyer
1d1f44b709
gnu: python-scikit-learn: Parallelize build and test suite. 
* gnu/packages/machine-learning.scm (python-scikit-learn)
[phases]{configure}: New phase.
{build-ext}: Add '-j' option.
{check}: Add '-n' option.
[native-inputs]: Add python-pytest-xdist.
 2022-05-12 12:45:55 -04:00
Efraim Flashner
53a8e8fd6c
gnu: python-hmmlearn: Remove cythonized file. 
* gnu/packages/machine-learning.scm (python-hmmlearn)[source]: Add
snippet to remove cythonized file.
 2022-04-15 02:11:03 +03:00
Ricardo Wurmus
e378e7a855
gnu: liblantern: Update to 0.7.2. 
* gnu/packages/machine-learning.scm (liblantern): Update to 0.7.2.
 2022-03-15 22:14:39 +01:00
Ricardo Wurmus
95f9c44362
gnu: liblantern: Update to 0.7.0. 
* gnu/packages/machine-learning.scm (liblantern): Update to 0.7.0.
 2022-03-15 20:18:42 +01:00
Ricardo Wurmus
d7636c8bb7
gnu: python-pytorch-for-r-torch: Reuse python-pytorch. 
* gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): Use
definition on python-pytorch, thereby updating to 1.10.2.
 2022-03-15 20:18:42 +01:00
Ricardo Wurmus
7146e553b9
gnu: Add liblantern. 
* gnu/packages/machine-learning.scm (liblantern): New variable.
 2022-02-11 15:44:42 +01:00
Ricardo Wurmus
7b676317b3
gnu: Add python-pytorch-for-r-torch. 
* gnu/packages/patches/python-pytorch-1.9.0-system-libraries.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): New variable.
 2022-02-11 15:44:42 +01:00
Ricardo Wurmus
8b787eb929
gnu: python-pytorch: Update to 1.10.2. 
* gnu/packages/machine-learning.scm (python-pytorch): Update to 1.10.2.
 2022-02-11 15:44:42 +01:00
Vinicius Monego
c30fa177f3
gnu: xgboost: Update to 1.5.2. 
* gnu/packages/machine-learning.scm (xgboost, python-xgboost): Update to
1.5.2.
(python-xgboost)[arguments]: Enable previously failing test.
* gnu/packages/patches/xgboost-use-system-dmlc-core.patch: Update patch.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-01-24 12:15:29 +01:00
Marius Bakke
af36848fb3
gnu: python-scikit-learn: Update to 1.0.2. 
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 1.0.2.
 2022-01-19 21:41:13 +01:00
Maxim Cournoyer
276f40fdc3
Merge branch 'version-1.4.0' 
With resolved conflicts in:
	gnu/packages/gnome.scm
	gnu/packages/openstack.scm
	gnu/packages/python-xyz.scm
 2022-01-17 11:47:09 -05:00
Sarah Morgensen
18e872b805
gnu: python-scikit-learn: Remove obsolete phase. 
* gnu/packages/machine-learning.scm (python-scikit-learn)[arguments]
<#:phases>: Remove 'make-files-writable phase.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2022-01-10 11:44:49 -05:00
Vinicius Monego
2522ea38a3
gnu: python-opentsne: Update to 0.6.1. 
* gnu/packages/machine-learning.scm (python-opentsne): Update to 0.6.1.
[source]<file-name>: Use git-file-name.
[arguments]<#:phases>: Don't return #t. Add 'skip-test phase after 'unpack to
skip a failing test.
 2022-01-14 21:29:59 +01:00
Vinicius Monego
0848b5595c
gnu: python-pynndescent: Update to 0.5.5. 
* gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.5.
[arguments]<#:phases>: Override 'check phase.
[native-inputs]: Remove python-nose. Add python-pytest.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
 2022-01-14 21:29:58 +01:00
Marius Bakke
c7ef428a18
gnu: python-scikit-rebate: Update to 0.62. 
* gnu/packages/machine-learning.scm (python-scikit-rebate): Update to 0.62.
[arguments]: Disable tests.
[native-inputs]: Remove.
 2022-01-11 18:36:39 +01:00
Ricardo Wurmus
06b51c68de
gnu: Add guile-aiscm-next. 
* gnu/packages/machine-learning.scm (guile-aiscm-next): New variable.
 2021-12-28 19:05:32 +01:00
Ricardo Wurmus
f44305bc13
gnu: guile-aiscm: Remove opencv and tensorflow. 
* gnu/packages/machine-learning.scm (guile-aiscm)[inputs]: Remove opencv and
tensorflow.
 2021-12-28 19:05:32 +01:00
Ricardo Wurmus
50bd2b331c
gnu: guile-aiscm: Remove timestamp from documentation. 
* gnu/packages/machine-learning.scm (guile-aiscm)[arguments]: Add phase
'build-reproducibly.
 2021-12-28 19:05:32 +01:00
Ricardo Wurmus
9e644d979d
gnu: tensorflow: Install C headers. 
* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Add build phase
'patch-cmake-file-to-install-c-headers; move setting of LDFLAGS from
'build-pip-package to 'unpack-third-party-sources; move 'build-pip-package
after 'install phase.
[source]: Add patch.
* gnu/packages/patches/tensorflow-c-api-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2021-12-28 19:05:32 +01:00
Ricardo Wurmus
f9d3f74ad2
gnu: Add guile-aiscm. 
* gnu/packages/machine-learning.scm (guile-aiscm): New variable.
 2021-12-27 13:21:05 +01:00
Ricardo Wurmus
e1c91aae23
gnu: tensorflow: Fix build with newer numpy. 
* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Rename
'python3.7-compatibility to 'python3.9-compatibility and patch file to allow
building with newer numpy.
 2021-12-15 08:31:50 +01:00
Ricardo Wurmus
76ab15a7c9
gnu: tensorflow: Do not unpack directory. 
* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Copy Eigen source
code instead of trying to unpack it.
 2021-12-14 15:34:44 +01:00
Ludovic Courtès
e3196755e6
gnu: Further simplify package inputs. 
This is the result of running:

  ./pre-inst-env guix style --input-simplification=safe

and manually undoing changes on a dozen of packages to reduce
rebuilds (derivations for emacs, icecat, and libreoffice are unchanged.)
 2021-12-13 22:15:07 +01:00
Ludovic Courtès
8394619bac
gnu: Simplify package inputs. 
This commit was obtained by running:

  ./pre-inst-env guix style

without any additional argument.
 2021-12-13 17:48:25 +01:00
Ricardo Wurmus
ab445eb4b7
gnu: python2-scikit-learn: Disable one more test. 
* gnu/packages/machine-learning.scm (python2-scikit-learn)[arguments]: Do not
inherit; remove obsolete 'make-files-writable phase; disable one more failing
test in 'check phase.
 2021-12-09 11:17:45 +01:00
Ricardo Wurmus
4fb363c906
gnu: libsvm: Install header and library. 
* gnu/packages/machine-learning.scm (libsvm)[arguments]: Add build phase
'build-lib; also install header file and shared library in the 'install phase.
 2021-12-09 11:17:45 +01:00
Ricardo Wurmus
c8060055de
gnu: ocaml-mcl: Add -fcommon to compiler flags. 
* gnu/packages/machine-learning.scm (ocaml-mcl)[arguments]: Add -fcommon.
 2021-12-08 14:31:54 +01:00
Ricardo Wurmus
c25a6d39f3
gnu: mcl: Add -fcommon to compiler flags. 
* gnu/packages/machine-learning.scm (mcl)[arguments]: Set CFLAGS.
 2021-12-07 12:34:34 +01:00
Ricardo Wurmus
9bc0f45df5
Merge remote-tracking branch 'origin/master' into core-updates-frozen 2021-12-05 19:17:41 +01:00
Ricardo Wurmus
cd40978a4b
gnu: randomjungle: Fix compatibility errors. 
* gnu/packages/machine-learning.scm (randomjungle)[arguments]: Add build phase
'fix-compatibility-errors to patch type errors.
 2021-12-02 00:32:12 +01:00
Ricardo Wurmus
b182e13638
gnu: python-scikit-learn: Update to 1.0.1. 
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 1.0.1.
[arguments]: Disable one failing network test.
 2021-11-20 16:22:53 +01:00
Ricardo Wurmus
3d56b8af90
gnu: python-scikit-learn: Run tests conditionally. 
* gnu/packages/machine-learning.scm (python-scikit-learn)[arguments]: Respect
TESTS? in 'check phase.
 2021-11-20 16:22:53 +01:00
Ricardo Wurmus
443f3e170a
gnu: python-pytorch: Warn of missing test inputs. 
* gnu/packages/machine-learning.scm (python-pytorch): Add comment.
 2021-11-20 12:02:19 +01:00
Ricardo Wurmus
9a3dffc851
gnu: python-pytorch: Add missing input. 
* gnu/packages/machine-learning.scm (python-pytorch)[propagated-inputs]: Add
python-click.
 2021-11-20 12:02:19 +01:00
Ricardo Wurmus
1e13f73605
gnu: python-pytorch: Use ADD-INSTALLED-PYTHONPATH. 
* gnu/packages/machine-learning.scm (python-pytorch)[arguments]: Do not set
PYTHONPATH; use add-installed-pythonpath instead.
 2021-11-20 12:02:19 +01:00
Ludovic Courtès
3a317f7476
Merge branch 'master' into core-updates-frozen 2021-11-17 23:43:14 +01:00
Ludovic Courtès
782e9975dc
gnu: python-pytorch: Update to 1.10.0. 
* gnu/packages/machine-learning.scm (python-pytorch): Update to 1.10.0.
* gnu/packages/patches/python-pytorch-system-libraries.patch: Adjust.
 2021-11-15 17:55:50 +01:00
Maxim Cournoyer
8b11b4a829
gnu: python-keras: Skip a flaky test. 
* gnu/packages/machine-learning.scm (python-keras)
[phases]{check}: Also skip the test_stateful_metrics test.
 2021-11-11 10:31:29 -05:00
Maxim Cournoyer
11e7a534f7
gnu: python-keras: Enable parallel tests. 
* (python-keras)[phases]: Delete trailing #t.
{check}: Honor TESTS?.  Run the tests in parallel.  Disable PEP8 lint.
 2021-11-11 10:31:28 -05:00
Maxim Cournoyer
92c3d1c3d0
gnu: tensorflow: Enable parallel build (at least partially). 
There are still many parts of the build that happen sequentially, but at least
this hastens the long build somewhat.

* gnu/packages/machine-learning.scm (tensorflow)[phases]: Remove trailing #t.
{build-pip-package}: Honor the PARALLEL-BUILD? argument.
 2021-11-11 10:31:28 -05:00
Maxim Cournoyer
f0ce5a6051
gnu: abseil-cpp: Update to 20210324.2. 
But keep the older variant for Tensorflow.

* gnu/packages/cpp.scm (abseil-cpp-20200923.3): Renamed older variant.
(abseil-cpp): New variable.
* gnu/packages/machine-learning.scm (tensorflow-lite)
[inputs]: Adjust to use the older abseil-cpp-20200923.3.
* gnu/packages/rpc.scm (grpc-1.16.1)[native-inputs]: Likewise.

Co-authored-by: Greg Hogan <code@greghogan.com>
 2021-11-11 10:31:25 -05:00
Mathieu Othacehe
a1eca979fb
Merge remote-tracking branch 'origin/master' into core-updates-frozen. 2021-10-12 17:46:23 +00:00
Vinicius Monego
40a6d8eb7d
gnu: Add python-xgboost. 
* gnu/packages/machine-learning.scm (python-xgboost): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-09-25 16:06:28 -04:00
Vinicius Monego
6e5e60a20c
gnu: Add xgboost. 
* gnu/packages/machine-learning.scm (xgboost): New variable.
* gnu/packages/patches/xgboost-use-system-dmlc-core.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-09-25 16:06:28 -04:00
Vinicius Monego
7e73fc3bb9
gnu: Add dmlc-core. 
* gnu/packages/machine-learning.scm (dmlc-core): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2021-09-25 16:06:23 -04:00