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79246 Commits (e4c02ac70f408ae3a4f6de761707a7ca7e5525e5)

Author SHA1 Message Date
Efraim Flashner 39dfc10bde
gnu: Add julia-jpegturbo-jll. 
* gnu/packages/julia-xyz.scm (julia-jpegturbo-jll): New variable.
 2021-05-20 17:12:24 +03:00
Maxim Cournoyer 2b425cf352
gnu: emacs-picpocket: Update to version 41. 
Partially resolves <https://issues.guix.gnu.org/47592>.

* gnu/packages/emacs-xyz.scm (emacs-picpocket): Update to version 41.
 2021-05-20 10:09:58 -04:00
Ricardo Wurmus 7ff515aa51
gnu: r-rhdf5filters: Update to 1.2.1. 
* gnu/packages/bioinformatics.scm (r-rhdf5filters): Update to 1.2.1.
 2021-05-20 14:43:34 +02:00
Ricardo Wurmus 1d7470874e
gnu: r-multidataset: Update to 1.18.2. 
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.18.2.
 2021-05-20 14:43:34 +02:00
Guillaume Le Vaillant 79922038bc
gnu: txr: Update to 259. 
* gnu/packages/lisp.scm (txr): Update to 259.
 2021-05-20 14:10:31 +02:00
Sharlatan Hellseher cb789cb43c
gnu: sbcl-flexi-streams: Update to 1.0.19. 
* gnu/packages/lisp-xyz.scm (sbcl-flexi-streams): Update to 1.0.19.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-20 14:10:31 +02:00
Sharlatan Hellseher f8238f9606
gnu: sbcl-fiveam: Update to 1.4.2. 
* gnu/packages/lisp-xyz.scm (sbcl-fiveam): Update to 1.4.2.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-20 14:10:31 +02:00
Sharlatan Hellseher f724e508e3
gnu: sbcl-golden-utils: Update to 0.0.0-3.fe1898f. 
* gnu/packages/lisp-xyz.scp (sbcl-golden-utils): Update to 0.0.0-3.fe1898f.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-20 14:10:31 +02:00
Sharlatan Hellseher 7b05665481
gnu: sbcl-numcl: Update to 0.2.0-2.3dcdb0e. 
* gnu/packages/lisp-xyz.scm (sbcl-numcl): Update to 0.2.0-2.3dcdb0e.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-20 14:10:31 +02:00
Sharlatan Hellseher ca23ba4f28
gnu: sbcl-pzmq: Update to 0.0.0-2.6f7b2ca. 
* gnu/packages/lisp-xyz.scm (sbcl-pzmq): Update to 0.0.0-2.6f7b2ca.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-05-20 14:10:31 +02:00
Nicolas Goaziou 71045f4e64
gnu: emacs-org: Update to 9.4.6. 
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.4.6.
[arguments]<phases>: Remove unnecessary phase.
(emacs-org-contrib): Update to 20210519.
 2021-05-20 13:58:29 +02:00
Pierre Neidhardt 562727d444
gnu: nyxt: Update to 2.0.0. 
* gnu/packages/web-browsers.scm (nyxt): Update to 2.0.0.
[arguments]: Remove useless set-version phase.
[inputs]: Remove unused file-attributes.
[description]: Follow upstream updates.
 2021-05-20 12:31:50 +02:00
Pierre Neidhardt cb68765a58
gnu: sbcl-iolib: Also build iolib/os. 
* gnu/packages/lisp-xyz.scm (sbcl-iolib)[arguments]: Add iolib/os to
asd-systems.
 2021-05-20 12:31:50 +02:00
Mathieu Othacehe 0471024acc
scripts: challenge: Fix regression. 
This is a follow-up of 3cde5231aa that fixes the
challenge test.

When dealing with uncompressed NAR, the file size is false. Propagate it to
progress-reporter/file as it used to be the case.

* guix/scripts/challenge.scm (call-with-nar): Accept false size.
 2021-05-20 11:44:35 +02:00
Ricardo Wurmus 7d3ad4c256
gnu: r-lme4: Update to 1.1-27. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-27.
[propagated-inputs]: Remove r-statmod.
 2021-05-20 10:58:18 +02:00
Ricardo Wurmus afd1391b2a
gnu: r-diptest: Update to 0.76-0. 
* gnu/packages/statistics.scm (r-diptest): Update to 0.76-0.
 2021-05-20 10:58:18 +02:00
Ricardo Wurmus c45cdd9035
gnu: r-statmod: Update to 1.4.36. 
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.36.
 2021-05-20 10:58:18 +02:00
Ricardo Wurmus e88fef1f43
gnu: r-viridis: Update to 0.6.1. 
* gnu/packages/statistics.scm (r-viridis): Update to 0.6.1.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus 20ab7a023c
gnu: r-rmarkdown: Update to 2.8. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.8.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus 5e46eb05fb
gnu: r-hms: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-hms): Update to 1.1.0.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus 057b44daa7
gnu: r-devtools: Update to 2.4.1. 
* gnu/packages/statistics.scm (r-devtools): Update to 2.4.1.
[propagated-inputs]: Remove r-jsonlite.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus 48ba3ab92f
gnu: r-dplyr: Update to 1.0.6. 
* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.6.
[propagated-inputs]: Add r-pillar.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus 0bcf86c35b
gnu: r-tibble: Update to 3.1.2. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.1.2.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus f29a1ade9d
gnu: r-stringi: Update to 1.6.2. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.6.2.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus bf67249071
gnu: r-matrix: Update to 1.3-3. 
* gnu/packages/statistics.scm (r-matrix): Update to 1.3-3.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus cb0ea86dcb
gnu: r-pdftools: Update to 3.0.1. 
* gnu/packages/cran.scm (r-pdftools): Update to 3.0.1.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus 7361897630
gnu: r-textshaping: Update to 0.3.4. 
* gnu/packages/cran.scm (r-textshaping): Update to 0.3.4.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus 0df3c20243
gnu: r-seuratobject: Update to 4.0.1. 
* gnu/packages/cran.scm (r-seuratobject): Update to 4.0.1.
[propagated-inputs]: Remove r-sctransform.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus 428fda3587
gnu: r-rsample: Update to 0.1.0. 
* gnu/packages/cran.scm (r-rsample): Update to 0.1.0.
[propagated-inputs]: Add r-lifecycle.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus e033e7c7d4
gnu: r-clusterr: Update to 1.2.4. 
* gnu/packages/cran.scm (r-clusterr): Update to 1.2.4.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus 65c01f0abb
gnu: r-rfast: Update to 2.0.3. 
* gnu/packages/cran.scm (r-rfast): Update to 2.0.3.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus 99bdcea1ea
gnu: r-oai: Update to 0.3.2. 
* gnu/packages/cran.scm (r-oai): Update to 0.3.2.
[native-inputs]: Add r-knitr.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus e928599671
gnu: r-proxyc: Update to 0.2.0. 
* gnu/packages/cran.scm (r-proxyc): Update to 0.2.0.
 2021-05-20 10:58:17 +02:00
Ricardo Wurmus 630239af23
gnu: r-caret: Update to 6.0-88. 
* gnu/packages/cran.scm (r-caret): Update to 6.0-88.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus 87bc2e125f
gnu: r-bio3d: Update to 2.4-2. 
* gnu/packages/cran.scm (r-bio3d): Update to 2.4-2.
[native-inputs]: Add r-knitr.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus 6d73b27e45
gnu: r-terra: Update to 1.2-10. 
* gnu/packages/cran.scm (r-terra): Update to 1.2-10.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus 1ab7a734ff
gnu: r-systemfonts: Update to 1.0.2. 
* gnu/packages/cran.scm (r-systemfonts): Update to 1.0.2.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus 3dc2e7b082
gnu: r-ibreakdown: Update to 2.0.1. 
* gnu/packages/cran.scm (r-ibreakdown): Update to 2.0.1.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus 8c1e07a266
gnu: r-ggplotify: Update to 0.0.7. 
* gnu/packages/cran.scm (r-ggplotify): Update to 0.0.7.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus 72a4b4e34f
gnu: r-msigdbr: Update to 7.4.1. 
* gnu/packages/cran.scm (r-msigdbr): Update to 7.4.1.
[propagated-inputs]: Add r-babelgene.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus 76cccb0971
gnu: r-pegas: Update to 1.0-1. 
* gnu/packages/cran.scm (r-pegas): Update to 1.0-1.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus da372ae603
gnu: r-valr: Update to 0.6.3. 
* gnu/packages/cran.scm (r-valr): Update to 0.6.3.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus bb5cc6548e
gnu: r-irkernel: Update to 1.2. 
* gnu/packages/cran.scm (r-irkernel): Update to 1.2.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus c787a71189
gnu: r-fields: Update to 12.3. 
* gnu/packages/cran.scm (r-fields): Update to 12.3.
[propagated-inputs]: Add r-viridis.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus c1648123c2
gnu: r-rnifti: Update to 1.3.1. 
* gnu/packages/cran.scm (r-rnifti): Update to 1.3.1.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus ecf62c7321
gnu: r-softimpute: Update to 1.4-1. 
* gnu/packages/cran.scm (r-softimpute): Update to 1.4-1.
[native-inputs]: Add r-knitr.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus ad88775716
gnu: r-fmsb: Update to 0.7.1. 
* gnu/packages/cran.scm (r-fmsb): Update to 0.7.1.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus 2620a65479
gnu: r-ouch: Update to 2.17. 
* gnu/packages/cran.scm (r-ouch): Update to 2.17.
 2021-05-20 10:58:16 +02:00
Ricardo Wurmus 4341da5882
gnu: r-biocmanager: Update to 1.30.15. 
* gnu/packages/cran.scm (r-biocmanager): Update to 1.30.15.
 2021-05-20 10:58:15 +02:00
Ricardo Wurmus cd488787af
gnu: r-rcppparallel: Update to 5.1.4. 
* gnu/packages/cran.scm (r-rcppparallel): Update to 5.1.4.
 2021-05-20 10:58:15 +02:00