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135140 Commits (e5c0ea22e68cc8d6f99957295bc9198afb8455df)

Author SHA1 Message Date
Ricardo Wurmus fbfd58b5bf
gnu: Add python-pims. 
* gnu/packages/image-processing.scm (python-pims): New variable.

Change-Id: I33e89dd865a38b526a1f766cf321a6c67a170a36
 2024-04-22 11:29:30 +02:00
Ricardo Wurmus 7ca1a02030
gnu: Add python-spatial-image. 
* gnu/packages/image-processing.scm (python-spatial-image): New variable.

Change-Id: I0e2bbfb94499aca71b33703153ad408530b60658
 2024-04-22 11:29:29 +02:00
Ricardo Wurmus 81eb92105f
gnu: Add python-xarray-datatree. 
* gnu/packages/python-science.scm (python-xarray-datatree): New variable.

Change-Id: I403f241b6daae8b5c835f4517a1dceca0393f8e6
 2024-04-22 11:29:29 +02:00
Ricardo Wurmus 3c00ef084b
gnu: Add python-xarray-dataclasses. 
* gnu/packages/python-science.scm (python-xarray-dataclasses): New variable.

Change-Id: I55f258e36ea70a2efb142bd652a81d70771a457c
 2024-04-22 11:29:29 +02:00
Ricardo Wurmus 15f4363df0
gnu: Add python-slicerator. 
* gnu/packages/python-xyz.scm (python-slicerator): New variable.

Change-Id: I9f24707f16cb34d25f6423b03fd07ea122d55064
 2024-04-22 11:29:29 +02:00
Ricardo Wurmus 5ac831d81b
gnu: python-nbclient: Update to 0.6.6. 
* gnu/packages/jupyter.scm (python-nbclient): Update to 0.6.6.
[build-system]: Use pyproject-build-system.
[propagated-inputs]: Remove python-nest-asyncio; add python-jupyter-core.

Change-Id: Idb70e781c508be389f08c0cab439644852b81577
 2024-04-22 11:29:29 +02:00
Ricardo Wurmus d1e66d2ddf
gnu: Add python-ipfsspec. 
* gnu/packages/python-xyz.scm (python-ipfsspec): New variable.

Change-Id: I1fe0c2523616b9567501ef369c07b61fcacbee81
 2024-04-22 11:29:29 +02:00
Alexis Simon 78d24b78d3
gnu: Add python-cyvcf2. 
* gnu/packages/bioinformatics.scm (python-cyvcf2): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I0db07e7b5840f5c1f5c68512ffabb3d6b39ab95c
 2024-04-22 11:29:29 +02:00
Ricardo Wurmus 8e5186ca9f
gnu: r-bayseq: Update to 2.36.2. 
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.36.2.

Change-Id: Ic709181286a25fb2540d73991196cd54302f6fa2
 2024-04-22 11:29:29 +02:00
Ricardo Wurmus 1ee8d23e8f
gnu: r-gsva: Update to 1.50.5. 
* gnu/packages/bioconductor.scm (r-gsva): Update to 1.50.5.

Change-Id: I18584e8766e8377f18321b4a4991edbbc933cbe2
 2024-04-22 11:29:29 +02:00
Ricardo Wurmus 32ff790ac4
gnu: r-alevinqc: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.18.1.

Change-Id: I84abb3751c44f4679ebf6c5c39f3b7d0027f002e
 2024-04-22 11:29:29 +02:00
Ricardo Wurmus fa8472f5be
gnu: r-lme4: Update to 1.1-35.3. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-35.3.

Change-Id: I20c5839dd74fc596406e129086cf58fb78d06297
 2024-04-22 11:29:29 +02:00
Ricardo Wurmus 26ebfaa9e4
gnu: r-diptest: Update to 0.77-1. 
* gnu/packages/statistics.scm (r-diptest): Update to 0.77-1.

Change-Id: I4f8c677984f68d3d8a093d5bdd497352e4c8d4c4
 2024-04-22 11:29:29 +02:00
Ricardo Wurmus 35b317eaa2
gnu: r-matrixstats: Update to 1.3.0. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 1.3.0.

Change-Id: I660f58800789f1e7e0a2380f3503597b62c0e5ba
 2024-04-22 11:29:29 +02:00
Ricardo Wurmus de274b5b72
gnu: r-rcpparmadillo: Update to 0.12.8.2.1. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.8.2.1.

Change-Id: Ibfc58ce4512ee1c50f9041708ae18b296f3987b1
 2024-04-22 11:29:29 +02:00
Ricardo Wurmus 1edfcf59fa
gnu: r-testthat: Update to 3.2.1.1. 
* gnu/packages/statistics.scm (r-testthat): Update to 3.2.1.1.

Change-Id: I57dbc93ab3dff959c3cb468e0fc71cf5865c4c65
 2024-04-22 11:29:29 +02:00
Ricardo Wurmus d3e8771e89
gnu: r-crul: Update to 1.4.2. 
* gnu/packages/cran.scm (r-crul): Update to 1.4.2.

Change-Id: I982b33d77d6a14803ad398c106131558e512f207
 2024-04-22 11:29:29 +02:00
Ricardo Wurmus 20865b87ae
gnu: r-paws-common: Update to 0.7.2. 
* gnu/packages/cran.scm (r-paws-common): Update to 0.7.2.

Change-Id: I48bc944013c82dcdcdc2a2063b3c4f925c733c03
 2024-04-22 11:29:29 +02:00
Ricardo Wurmus 5b0bc82f36
gnu: r-tensorflow: Update to 2.16.0. 
* gnu/packages/cran.scm (r-tensorflow): Update to 2.16.0.

Change-Id: I6f356117eaa78961a8ea6689b08a8dae1778de03
 2024-04-22 11:29:28 +02:00
Ricardo Wurmus 0756a2fb0d
gnu: r-pkgdown: Update to 2.0.8. 
* gnu/packages/cran.scm (r-pkgdown): Update to 2.0.8.

Change-Id: Ib96ecbb5a78e8a53ecceae9c7b9e814690009986
 2024-04-22 11:29:28 +02:00
Ricardo Wurmus 8aa1f5e36b
gnu: r-mlr3misc: Update to 0.15.0. 
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.15.0.

Change-Id: I96f607787c4816c849ad7fa23ebb62855bf4f24e
 2024-04-22 11:29:28 +02:00
Ricardo Wurmus 9f3e235a25
gnu: r-tidytext: Update to 0.4.2. 
* gnu/packages/cran.scm (r-tidytext): Update to 0.4.2.

Change-Id: I3ec30c70dee2b8ab719a1435db5e97354bc93459
 2024-04-22 11:29:28 +02:00
Ricardo Wurmus dc4ade072a
gnu: r-butcher: Update to 0.3.4. 
* gnu/packages/cran.scm (r-butcher): Update to 0.3.4.

Change-Id: I31145414549fb55b36b97e823797d645a4248dde
 2024-04-22 11:29:28 +02:00
Ricardo Wurmus 4ab3ffa950
gnu: r-dunn-test: Update to 1.3.6. 
* gnu/packages/cran.scm (r-dunn-test): Update to 1.3.6.

Change-Id: Ic8efd6dfd893719522f1c8dab05a782807a25c09
 2024-04-22 11:29:28 +02:00
Ricardo Wurmus aa1b8b4940
gnu: r-tuner: Update to 1.4.7. 
* gnu/packages/cran.scm (r-tuner): Update to 1.4.7.

Change-Id: I709c7b844f67977b0fe367ff21196d221884761e
 2024-04-22 11:29:28 +02:00
Ricardo Wurmus f434613850
gnu: r-uwot: Update to 0.2.1. 
* gnu/packages/cran.scm (r-uwot): Update to 0.2.1.
[native-inputs]: Add r-knitr.

Change-Id: Ife200a7ee6316f7accdb596e8bdb709b65461ba2
 2024-04-22 11:29:28 +02:00
Ricardo Wurmus 1831f6c790
gnu: r-ggfortify: Update to 0.4.17. 
* gnu/packages/cran.scm (r-ggfortify): Update to 0.4.17.

Change-Id: If1188165f5050b247ace0507d6c9736714014d94
 2024-04-22 11:29:28 +02:00
Ricardo Wurmus 8e686a48e6
gnu: r-optparse: Update to 1.7.5. 
* gnu/packages/cran.scm (r-optparse): Update to 1.7.5.

Change-Id: I7154363b719df7595e6c213b7dedb0ea9f65401c
 2024-04-22 11:29:28 +02:00
Ricardo Wurmus c27ec1b7be
gnu: r-bookdown: Update to 0.39. 
* gnu/packages/cran.scm (r-bookdown): Update to 0.39.

Change-Id: Ib6dd434091af59fb191498f74ddd7dcd793f3818
 2024-04-22 11:29:28 +02:00
Ricardo Wurmus 092f44282f
gnu: r-ggeffects: Update to 1.5.2. 
* gnu/packages/cran.scm (r-ggeffects): Update to 1.5.2.

Change-Id: Id12cdae314f100eb4f8bea22f88d857c02d08b8e
 2024-04-22 11:29:28 +02:00
Ricardo Wurmus f42dd6f187
gnu: r-argparse: Update to 2.2.3. 
* gnu/packages/cran.scm (r-argparse): Update to 2.2.3.

Change-Id: Ice5245a0aee41bd3ccccfc4e34fb516965c3eb6b
 2024-04-22 11:29:28 +02:00
Ricardo Wurmus 5dc7447450
gnu: r-reticulate: Update to 1.36.0. 
* gnu/packages/cran.scm (r-reticulate): Update to 1.36.0.

Change-Id: I0f8478233a848bdb21663ed26c9620014cf8d470
 2024-04-22 11:29:28 +02:00
Ricardo Wurmus 7b2c9efb93
gnu: r-renv: Update to 1.0.7. 
* gnu/packages/cran.scm (r-renv): Update to 1.0.7.

Change-Id: I81443202b8f6a207db88e01bfa109c54f1a5a6b2
 2024-04-22 11:29:28 +02:00
Ricardo Wurmus 60d57befca
gnu: r-restrserve: Update to 1.2.2. 
* gnu/packages/cran.scm (r-restrserve): Update to 1.2.2.

Change-Id: I49138bd1989b4d3a8e182d99075d8bf58e8bd0fc
 2024-04-22 11:29:28 +02:00
Ricardo Wurmus 6ac1980ae1
gnu: r-prismatic: Update to 1.1.2. 
* gnu/packages/cran.scm (r-prismatic): Update to 1.1.2.

Change-Id: I0f9cca92ab049cffe321530ce59f527d1fe948f7
 2024-04-22 11:29:28 +02:00
Ricardo Wurmus b1742135e1
gnu: r-ape: Update to 5.8. 
* gnu/packages/cran.scm (r-ape): Update to 5.8.

Change-Id: Ic35ba5e0a96dec16b89004cbfa6b48d2c88951a1
 2024-04-22 11:29:27 +02:00
Ricardo Wurmus 5ff9484e7b
gnu: r-collapse: Update to 2.0.13. 
* gnu/packages/cran.scm (r-collapse): Update to 2.0.13.

Change-Id: I78eb83695807325581a3bc213c35a58258df882e
 2024-04-22 11:29:27 +02:00
Ricardo Wurmus 173108be58
gnu: r-metap: Update to 1.10. 
* gnu/packages/bioconductor.scm (r-metap): Update to 1.10.

Change-Id: I1890c61b9a20d61a55bf76d61278729b0ae4356a
 2024-04-22 11:29:27 +02:00
Wilko Meyer af4db17122
gnu: fuzzel: Update to 1.10.2. 
* gnu/packages/xdisorg.scm (fuzzel): Update to 1.10.2.

Change-Id: I4a7e0d6082ecdbe82aaa893cfabf3f20101d1d29
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-04-22 09:54:02 +08:00
Wilko Meyer 2b32614d85
gnu: foot: Update to 1.17.2. 
* gnu/packages/terminals.scm (foot): Update to 1.17.2.

Change-Id: Ic45acd0d0fd3e4314669a765f4d97cfcd26a73d0
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-04-22 09:54:02 +08:00
Timotej Lazar 53623ce862
gnu: qmmp: Add missing inputs. 
* gnu/packages/music.scm (qmmp): Add inputs to support unpacking skins.
[inputs]: Add tar and unzip.
[arguments]: Add phase to set absolute paths to these programs.

Change-Id: I79a6530ad27b474ecc64e5b7de36e0370595bc69
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-04-22 09:54:02 +08:00
Timotej Lazar fa67c2718a
gnu: qmmp: Update to 2.1.7. 
* gnu/packages/music.scm (qmmp): Update to 2.1.7.
[properties]: Add release-monitoring-url.

Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-04-22 09:53:54 +08:00
Danny Milosavljevic 9fa34ad616
gnu: Add cadabra2. 
* gnu/packages/engineering.scm (cadabra2): New variable.

Change-Id: Ia35b1317b18eb1d8729f003a27df07ac7888d412
 2024-04-22 00:53:57 +02:00
Zheng Junjie a1d711c92e
gnu: blender: Fix url. 
* gnu/packages/graphics.scm (blender): Add www to url.

Change-Id: I0d1e84f59d2ac0d0e9c72a5857afefc05d161eac
 2024-04-21 12:09:33 +08:00
David Thompson 1d6811cec3
gnu: blender: Add wrap-bin phase. 
* gnu/packages/graphics.scm (blender)[arguments]: Add wrap-bin phase to set proper
GUIX_PYTHONPATH.
[inputs]: Add bash-minimal per 'guix lint'.

Change-Id: I435957baf181ef7f92d4160529439357e16714f6
Signed-off-by: Zheng Junjie <zhengjunjie@iscas.ac.cn>
 2024-04-21 11:52:56 +08:00
宋文武 38b88d710e
gnu: font-public-sans: Update to 2.001. 
* gnu/packages/fonts.scm (font-public-sans): Update to 2.001.

Change-Id: I404ec907827b4ce5b08f5021ef22dc0e8bb55e7a
 2024-04-21 10:46:58 +08:00
宋文武 12474d20d2
gnu: font-mononoki: Update to 1.6. 
* gnu/packages/fonts.scm (font-mononoki): Update to 1.6.

Change-Id: I39d2690481197afa86ebdf959fd5f904d0b3104f
 2024-04-21 10:46:57 +08:00
宋文武 9ddbfb27cf
gnu: font-spleen: Update to 2.1.0. 
* gnu/packages/fonts.scm (font-spleen): Update to 2.1.0.

Change-Id: Icd27bdfa3d30dee6bc182bb21780e55f58185e7a
 2024-04-21 10:25:02 +08:00
Maxim Cournoyer 43a4215cad
Authorize the PGP key of Zheng Junjie (z572). 
Welcome aboard!

Voucher: Ludovic Courtès <ludo@gnu.org>
Voucher: Christopher Baines <mail@cbaines.net>
Voucher: 宋文武 <iyzsong@member.fsf.org>
Change-Id: Id24cca4940f31468fda7c5d33cc3bef6854a66cd
 2024-04-20 13:05:23 -04:00
Julien Lepiller 92af4ea17f
gnu: java-powermock-reflect: Update to 2.0.9. 
* gnu/packages/java.scm (java-powermock-reflect): Update to 2.0.9.
[source]: Use git source.
(java-powermock-reflect, java-powermock-core, java-powermock-api-support)
(java-powermock-junit4-common, java-powermock-junit4)
(java-powermock-api-easymock): Update inputs and use new style.
* gnu/packages/patches/java-powermock-fix-java-files.patch: Update
  patch.

Change-Id: I856e5f923b094b9fcfa78f5f1d6ca2e4c2af41a7
 2024-04-20 18:34:41 +02:00