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62177 Commits (e65783e032f6a97e846493f3119985b6a10dd7b5)

Author SHA1 Message Date
Ricardo Wurmus ae0fcaa6fd
gnu: r-ruvseq: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.22.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:50 +02:00
Ricardo Wurmus 14f40ae830
gnu: r-dnabarcodes: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.18.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:50 +02:00
Ricardo Wurmus 437bc4dda9
gnu: r-inspect: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.18.0.
[propagated-inputs]: Add r-rtracklayer.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:50 +02:00
Ricardo Wurmus 46a973bc24
gnu: r-plgem: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-plgem): Update to 1.60.0.
2020-06-13 01:19:50 +02:00
Ricardo Wurmus ee73dea61b
gnu: r-rots: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-rots): Update to 1.16.0.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus a6251d6e8b
gnu: r-glimma: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.16.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus 7fbd97745b
gnu: r-goseq: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.40.0.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus c7be592fb4
gnu: r-ctc: Update to 1.62.0.
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.62.0.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus 76dd036e16
gnu: r-genomicinteractions: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.22.0.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus 861a903f14
gnu: r-interactionset: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.16.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus 6b78a91b75
gnu: r-riboseqr: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.22.0.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus 7aae05a953
gnu: r-riboprofiling: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.18.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus ef1d3231c3
gnu: r-chipcomp: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.18.0.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus 9834c36724
gnu: r-bayseq: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.22.0.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus f4ef564595
gnu: r-qdnaseq: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.24.0.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus de4a352e8a
gnu: r-cghcall: Update to 2.50.0.
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.50.0.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus bd93ec4cf0
gnu: r-cghbase: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.48.0.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus 49d589e530
gnu: r-marray: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-marray): Update to 1.66.0.
2020-06-13 01:19:49 +02:00
Ricardo Wurmus dc24de46ad
gnu: r-chippeakanno: Update to 3.22.2.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.22.2.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus 7d37c6d914
gnu: r-graph: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-graph): Update to 1.66.0.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus 8cadf253c3
gnu: r-multtest: Update to 2.44.0.
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.44.0.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus b47b649ae5
gnu: r-diffbind: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.16.0.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus f9a247590e
gnu: r-qvalue: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-qvalue): Update to 2.20.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus ace82f805f
gnu: r-oligo: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.52.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus b628842f7e
gnu: r-oligoclasses: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.50.0.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus 53e4201937
gnu: r-geneplotter: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.66.0.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus 7f94cf0184
gnu: r-reportingtools: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.28.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus 7f34dd58e9
gnu: r-regioner: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.20.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus 07bea01092
gnu: r-hpar: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.30.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus c2f4ad96f5
gnu: r-annotate: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.66.0.
2020-06-13 01:19:48 +02:00
Ricardo Wurmus acaf8a2342
gnu: r-affxparser: Update to 1.60.0.
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.60.0.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus fa61069781
gnu: r-affycoretools: Update to 1.60.1.
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.60.1.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus 36d4ca410d
gnu: r-affycontam: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.46.0.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus 251c18f1ed
gnu: r-affycompatible: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.48.0.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus 66aeb1b46d
gnu: r-affycomp: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.64.0.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus 2e15c16f1e
gnu: r-biocgenerics: Update to 0.34.0.
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.34.0.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus bc217e4c0c
gnu: r-biocversion: Update to 3.11.1.
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.11.1.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus 1ab0380db9
gnu: r-cummerbund: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.30.0.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus 751fa8ff71
gnu: r-coverageview: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.26.0.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus 725eea00da
gnu: r-ideoviz: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.24.0.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus a3b55161c7
gnu: r-delayedmatrixstats: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.10.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus 47c7670c43
gnu: r-scran: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.16.0.
[propagated-inputs]: Add r-iranges.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:47 +02:00
Ricardo Wurmus 7039b53945
gnu: r-scater: Update to 1.16.1.
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.16.1.
[propagated-inputs]: Add r-rlang.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:46 +02:00
Ricardo Wurmus 9e7acf2f14
gnu: r-singlecellexperiment: Update to 1.10.1.
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.10.1.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:46 +02:00
Ricardo Wurmus 16dd6bacaa
gnu: r-beachmat: Update to 2.4.0.
* gnu/packages/bioinformatics.scm (r-beachmat): Update to 2.4.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:46 +02:00
Ricardo Wurmus 87d5444d9f
gnu: r-rhdf5lib: Update to 1.10.0.
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.10.0.
[source]: Update snippet.
[arguments]: Replace ZLIB variables in Makevars.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:46 +02:00
Ricardo Wurmus cf907680e8
gnu: r-hdf5array: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.16.0.
2020-06-13 01:19:46 +02:00
Ricardo Wurmus 46f188d1df
gnu: r-hitc: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.32.0.
2020-06-13 01:19:46 +02:00
Ricardo Wurmus 6be25cc2db
gnu: r-fithic: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.14.0.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:46 +02:00
Ricardo Wurmus a811751f49
gnu: r-sushi: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.26.0.
2020-06-13 01:19:46 +02:00