0a64d8e005
gnu: Add texlive-latex-epstopdf-pkg.
...
* gnu/packages/tex.scm (texlive-latex-epstopdf-pkg): New public variable.
2021-06-06 00:12:51 +02:00
f2543d82ae
gnu: Add texlive-latex-auxhook.
...
* gnu/packages/tex.scm (texlive-latex-auxhook): New public variable.
2021-06-06 00:12:51 +02:00
25de551c26
gnu: Add texlive-latex-atveryend.
...
* gnu/packages/tex.scm (texlive-latex-atveryend): New public variable.
2021-06-06 00:12:51 +02:00
730e7fcb77
gnu: simple-texlive-package: Fix shebang patching.
...
* gnu/packages/tex.scm (simple-texlive-package)[arguments]: Copy the working
directory instead of the source directory to the output.
2021-06-06 00:12:51 +02:00
5e61abcaf6
gnu: dblatex: Update to 0.3.12.
...
* gnu/packages/docbook.scm (dblatex): Update to 0.3.12.
[source](uri): Adjust file name.
[inputs]: Add TEXLIVE-LATEX-BOOKMARK and TEXLIVE-LATEX-REFCOUNT.
[arguments]: Remove #:python.
2021-06-06 00:12:51 +02:00
4d85dde0ef
gnu: Add texlive-latex-bookmark.
...
* gnu/packages/tex.scm (texlive-latex-bookmark): New public variable.
2021-06-06 00:12:51 +02:00
a8e8c9e59c
gnu: Add texlive-latex-refcount.
...
* gnu/packages/tex.scm (texlive-latex-refcount): New public variable.
2021-06-06 00:12:50 +02:00
7747df1bc2
gnu: TeX Live: Update to 2020.0.
...
* guix/build-system/texlive.scm (%texlive-tag): Set to 2020.0.
(%texlive-revision): Set to 54632.
* gnu/packages/tex.scm (texlive-extra-src, texlive-texmf-src, texlive-bin,
texlive-texmf, texlive): Update to 20200406.
(texlive-bin)[source](patches): Remove.
[arguments]: Adjust poppler compatibility phase for new upstream patches.
* gnu/packages/tex.scm (hyph-utf8-scripts, texlive-docstrip, texlive-unicode-data
texlive-hyphen-base, texlive-dvips, texlive-metafont-base, texlive-fontinst,
texlive-fontname, texlive-tex-plain, texlive-hyphen-bulgarian, texlive-hyphen-chinese,
texlive-hyphen-hungarian, texlive-hyphen-latin, texlive-hyphen-sanskrit,
texlive-hyphen-spanish, texlive-hyph-utf8, texlive-kpathsea,
texlive-latexconfig, texlive-latex-base, texlive-union,
texlive-latex-filecontents, texlive-latex-fancyvrb, texlive-graphics-def,
texlive-latex-graphics, texlive-latex-oberdiek, texlive-latex-tools,
texlive-latex-l3kernel, texlive-latex-l3packages, texlive-latex-fontspec,
texlive-latex-amsmath, texlive-latex-babel, texlive-latex-draftwatermark,
texlive-etoolbox, texlive-latex-geometry, texlive-latex-polyglossia,
texlive-latex-supertabular, texlive-tex-texinfo, texlive-latex-appendix,
texlive-latex-colortbl, texlive-latex-listings, texlive-inconsolata,
texlive-latex-enumitem, texlive-latex-multirow, texlive-latex-overpic,
texlive-latex-parskip, texlive-latex-pdfpages, texlive-libertine,
texlive-latex-titlesec, texlive-metapost, texlive-latex-acmart,
texlive-latex-wasysym, texlive-latex-preview, texlive-latex-acronym,
texlive-pdftex, texlive-latex-media9, texlive-latex-ocgx2, texlive-latex-ms,
texlive-generic-ulem, texlive-latex-pgf, texlive-latex-koma-script,
texlive-generic-listofitems, texlive-bibtex, texlive-context-base,
texlive-beamer, texlive-pstricks, texlive-marginnote, texlive-iftex,
texlive-tools, texlive-siunitx, texlive-booktabs, texlive-csquotes,
texlive-biblatex, texlive-microtype, texlive-caption, texlive-ydoc,
texlive-courier, texlive-hyperref, texlive-fontspec, texlive-l3build,
texlive-luaotfload, texlive-babel, texlive-tipa, texlive-jknappen,
texlive-wasy, texlive-context, texlive-cabin, texlive-fourier,
texlive-mweights, texlive-newtx, texlive-xcharter, texlive-tcolorbox): Update
hashes.
(texlive-hyphen-bulgarian): Don't include removed files.
(texlive-hyphen-hungarian, texlive-hyphen-sanskrit): Adjust for directory
rename.
(texlive-hyphen-chinese, texlive-hyphen-latin): Add more files.
(texlive-hyphen-macedonian): New public variable.
(texlive-metafont-base)[source]: Switch to SVN-MULTI-FETCH.
[arguments]: Adjust for extra source files.
(texlive-latex-base)[arguments]: Disable more formats.
[propagated-inputs]: Add TEXLIVE-HYPHEN-MACEDONIAN.
(texlive-fontinst): Don't include "scripts/texlive/fontinst.sh".
(texlive-generic-iftex): New public variable.
(texlive-iftex, texlive-generic-ifxetex): Deprecate in favor of
TEXLIVE-GENERIC-IFTEX.
(texlive-latex-oberdiek)[propagated-inputs]: Change from
TEXLIVE-GENERIC-IFXETEX to TEXLIVE-GENERIC-IFTEX.
(texlive-latex-xkeyval)[native-inputs]: Likewise.
(texlive-default-updmap.cfg): Remove variable.
* gnu/packages/patches/texlive-bin-poppler-0.83.patch,
gnu/packages/patches/texlive-bin-poppler-0.86.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-06-06 00:12:50 +02:00
08b55f1443
gnu: Add libdqlite.
...
* gnu/packages/cluster.scm (libdqlite): New Variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-06-05 23:39:29 +02:00
404f6145ee
gnu: Add lxcfs.
...
* gnu/packages/virtualization.scm (lxcfs): New Variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-06-05 23:39:29 +02:00
23ab8d417e
gnu: gparted: Update to 1.3.0.
...
* gnu/packages/disk.scm (gparted): Update to 1.3.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-06-05 23:39:29 +02:00
f1e0e5fde3
gnu: icedove: Update to 78.11.0 [fixes CVE-2021-29967].
...
* gnu/packages/gnuzilla.scm (icedove): Update to 78.11.0.
2021-06-05 23:07:06 +02:00
7905b901a2
gnu: Add nitrocli.
...
* gnu/packages/security-token.scm (nitrocli): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 22:17:50 +02:00
3463559d55
gnu: Add rust-base32-0.4.
...
* gnu/packages/crates-io.scm (rust-base32-0.4): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 22:17:50 +02:00
add0c5f2b1
gnu: Add rust-envy-0.4.
...
* gnu/packages/crates-io.scm (rust-envy-0.4): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 22:17:49 +02:00
7b5f5aa82b
gnu: Add rust-merge-0.1.
...
* gnu/packages/crates-io.scm (rust-merge-0.1): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 22:17:49 +02:00
9c92fb862d
gnu: Add rust-merge-derive-0.1.
...
* gnu/packages/crates-io.scm (rust-merge-derive-0.1): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 22:12:01 +02:00
ed30001472
gnu: Add rust-nitrokey-0.9.
...
* gnu/packages/crates-io.scm (rust-nitrokey-0.9): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 22:11:53 +02:00
51f5292014
gnu: Add rust-progressing-3.
...
* gnu/packages/crates-io.scm (rust-progressing-3): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 22:11:24 +02:00
38233e745e
gnu: rust-structopt-0.3: Update to 0.3.21.
...
* gnu/packages/crates-io.scm (rust-structopt-0.3): Update to 0.3.21.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 22:10:41 +02:00
febfd4ce0d
gnu: rust-structopt-derive-0.4: Update to 0.4.14.
...
* gnu/packages/crates-io.scm (rust-structopt-derive-0.4): Update to 0.4.14.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 22:10:04 +02:00
bdd2970c08
gnu: wgetpaste: Update to 2.32.
...
* gnu/packages/wget.scm (wgetpaste): Update to 2.32.
[source]: Remove patch.
* gnu/packages/patches/wgetpaste-update-bpaste.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-06-05 19:14:15 +02:00
2e97761efe
gnu: wgetpaste: Build from Git.
...
* gnu/packages/wget.scm (wgetpaste)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2021-06-05 19:14:14 +02:00
c107a30bb4
gnu: wgetpaste: Don't install LICENSE file twice.
...
* gnu/packages/wget.scm (wgetpaste)[arguments]: Leave LICENSE file
installation to the aptly-named 'install-license-files default phase.
2021-06-05 19:14:14 +02:00
a80cde0326
gnu: console-setup: Update to 1.203.
...
* gnu/packages/xorg.scm (console-setup): Update to 1.203.
2021-06-05 19:01:08 +02:00
cd6c61f8c8
gnu: nzbget: Update to 21.1.
...
* gnu/packages/networking.scm (nzbget): Update to 21.1.
[source]: Remove upstreamed snippet.
2021-06-05 19:01:08 +02:00
ddc9da2ba9
gnu: faudio: Update to 21.06.
...
* gnu/packages/audio.scm (faudio): Update to 21.06.
2021-06-05 18:29:56 +02:00
f1a4b85af1
gnu: wireshark: Inspect HTTP/2 headers.
...
* gnu/packages/networking.scm (wireshark)[inputs]: Add nghttp2:lib.
2021-06-05 18:29:56 +02:00
0339829a63
gnu: wireshark: Support more compression algorithms.
...
* gnu/packages/networking.scm (wireshark)[inputs]: Add google-brotli,
minizip, and zstd:lib.
2021-06-05 18:29:56 +02:00
debcc760e8
gnu: qca: Update to 2.3.3.
...
* gnu/packages/kde.scm (qca): Update to 2.3.3.
2021-06-05 18:29:55 +02:00
d22b1b21f6
gnu: iperf: Update to 3.10.1.
...
* gnu/packages/networking.scm (iperf): Update to 3.10.1.
2021-06-05 18:29:55 +02:00
c6e36ee2dc
gnu: ispell: Update to 3.4.04.
...
* gnu/packages/aspell.scm (ispell): Update to 3.4.04.
2021-06-05 18:29:55 +02:00
605a40b385
gnu: nnn: Remove marketing hyperbole.
...
* gnu/packages/admin.scm (nnn)[description]: Gush less.
2021-06-05 18:29:55 +02:00
49dd606f57
gnu: nnn: Use #:make-flags over Makefile patching.
...
* gnu/packages/admin.scm (nnn)[arguments]: Remove 'patch-pkg-config
phase. Set PKG_CONFIG in #:make-flags instead.
2021-06-05 18:29:55 +02:00
1e1a274ffd
gnu: nnn: Update to 4.1.1.
...
* gnu/packages/admin.scm (nnn): Update to 4.1.1.
2021-06-05 18:29:55 +02:00
ddd871c18a
gnu: thermald: Compile with -Werror again.
...
* gnu/packages/admin.scm (thermald)[arguments]: Remove substitution,
and a #t whilst we're here.
2021-06-05 18:29:54 +02:00
9412762f9b
gnu: thermald: Update to 2.4.5.
...
* gnu/packages/admin.scm (thermald): Update to 2.4.5.
2021-06-05 18:29:54 +02:00
de1b8f7143
gnu: wireshark: Update to 3.4.6.
...
* gnu/packages/networking.scm (wireshark): Update to 3.4.6.
2021-06-05 17:48:42 +02:00
38eaba9a8e
gnu: giac: Update to 1.7.0-11.
...
* gnu/packages/algebra.scm (giac): Update to 1.7.0-11.
2021-06-05 17:24:13 +02:00
20d9535e1b
gnu: nsis: Respect SOURCE-DATE-EPOCH for reproducibility
...
* gnu/packages/patches/nsis-source-date-epoch.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/installers.scm (make-nsis)[source]: Apply it.
2021-06-05 11:21:11 -04:00
9da90938c6
gnu: rosegarden: Update to 21.06.
...
* gnu/packages/music.scm (rosegarden): Update to 21.06.
2021-06-05 16:08:34 +02:00
bb7706dcdd
gnu: emacs-undercover: Update to 0.8.1.
...
* gnu/packages/emacs-xyz.scm (emacs-undercover): Update to 0.8.1.
2021-06-05 15:57:59 +02:00
bdab742322
gnu: emacs-all-the-icons: Update to 5.0.0.
...
* gnu/packages/emacs-xyz.scm (emacs-all-the-icons): Update to 5.0.0.
2021-06-05 15:56:20 +02:00
fb41cc6c41
gnu: emacs-leaf: Update to 4.4.8.
...
* gnu/packages/emacs-xyz.scm (emacs-leaf): Update to 4.4.8.
2021-06-05 15:52:52 +02:00
11f18341db
gnu: Add emacs-vscode-dark-plus.
...
* gnu/packages/emacs-xyz.scm (emacs-vscode-dark-plus): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 15:47:52 +02:00
087fbcfe48
gnu: Add emacs-flymake-kondor.
...
* gnu/packages/emacs-xyz.scm (emacs-flymake-kondor): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 14:25:30 +02:00
00f8451ea1
gnu: Add emacs-flymake-quickdef.
...
* gnu/packages/emacs-xyz.scm (emacs-flymake-quickdef): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 14:23:28 +02:00
0a4b2da0ed
gnu: Add emacs-anakondo.
...
* gnu/packages/emacs-xyz.scm (emacs-anakondo): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 14:10:54 +02:00
c6d4f974bc
gnu: Add emacs-clojure-snippets.
...
* gnu/packages/emacs-xyz.scm (emacs-clojure-snippets): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 14:00:42 +02:00
fec881eac3
gnu: Add emacs-kibit-helper.
...
* gnu/packages/emacs-xyz.scm (emacs-kibit-helper): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 13:50:10 +02:00
b61ee34c9d
gnu: Add emacs-djvu3.
...
* gnu/packages/emacs-xyz.scm (emacs-djvu3): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 13:43:36 +02:00
612e5b8528
gnu: Add emacs-hg-histedit.
...
* gnu/packages/emacs-xyz.scm (emacs-hg-histedit): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 13:41:42 +02:00
bbf54272c6
gnu: Add emacs-hgignore-mode.
...
* gnu/packages/emacs-xyz.scm (emacs-hgignore-mode): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-05 13:39:30 +02:00
ac9da35707
gnu: emacs-webfeeder: Update to 1.1.2.
...
* gnu/packages/emacs-xyz.scm (emacs-webfeeder): Update to 1.1.2.
2021-06-05 12:56:53 +02:00
f9a7a365ed
gnu: liquid-dsp: Remove unused input.
...
* gnu/packages/radio.scm (liquid-dsp)[inputs]: Remove fftw.
2021-06-05 11:45:47 +02:00
3a8d0eff9e
gnu: liquid-dsp: Remove static library.
...
* gnu/packages/radio.scm (liquid-dsp)[arguments]: Add 'delete-static-library'
phase.
2021-06-05 11:43:00 +02:00
573f777495
gnu: liquid-dsp: Add support for more error correction codes.
...
* gnu/packages/radio.scm (liquid-dsp)[inputs]: Add libfec.
2021-06-05 11:38:09 +02:00
ba9cbb6612
gnu: Add libfec.
...
* gnu/packages/radio.scm (libfec): New variable.
2021-06-05 11:23:10 +02:00
f9ef881e4d
gnu: python-pypandoc: Use patched texlive-amsfonts.
...
* gnu/packages/python-xyz.scm (python-pypandoc)[native-inputs]: Use
texlive-amsfonts/patched.
2021-06-05 09:26:14 +02:00
45aae518e7
gnu: python-ipython-documentation: Use patched texlive-amsfonts.
...
* gnu/packages/python-xyz.scm (python-ipython-documentation)[native-inputs]:
Use texlive-amsfonts/patched.
2021-06-05 09:26:14 +02:00
ace97406f2
gnu: python-matplotlib-documentation: Use patched texlive-amsfonts.
...
* gnu/packages/python-xyz.scm (python-matplotlib-documentation)[native-inputs]:
Use texlive-amsfonts/patched.
2021-06-05 09:26:14 +02:00
d71751526f
gnu: python-numpy-documentation: Use patched texlive-amsfonts.
...
* gnu/packages/python-xyz.scm (python-numpy-documentation)[native-inputs]: Use
texlive-amsfonts/patched.
2021-06-05 09:26:14 +02:00
af8a5285d2
gnu: libosmo-dsp: Use patched texlive-amsfonts.
...
* gnu/packages/radio.scm (libosmo-dsp)[native-inputs]: Use
texlive-amsfonts/patched.
2021-06-05 09:26:14 +02:00
232bdb900d
gnu: gnuradio: Use patched texlive-amsfonts.
...
* gnu/packages/radio.scm (gnuradio)[native-inputs]: Use
texlive-amsfonts/patched.
2021-06-05 09:26:14 +02:00
41bbbd53d2
gnu: asymptote: Use patched texlive-amsfonts.
...
Fixes <https://bugs.gnu.org/39101 >.
* gnu/packages/plotutils.scm (asymptote)[native-inputs]: Use
texlive-amsfonts/patched.
2021-06-05 09:26:14 +02:00
11caa5f68a
gnu: emacs-auctex: Use patched texlive-amsfonts.
...
* gnu/packages/emacs-xyz.scm (emacs-auctex)[inputs]: Use
texlive-amsfonts/patched.
2021-06-05 09:26:14 +02:00
701a115533
gnu: dblatex: Use patched texlive-amsfonts.
...
* gnu/packages/docbook.scm (dblatex)[inputs]: Use texlive-amsfonts/patched.
2021-06-05 09:26:14 +02:00
c2b6d36b66
gnu: pari-gp: Use patched texlive-amsfonts.
...
* gnu/packages/algebra.scm (pari-gp)[native-inputs]: Use
texlive-amsfonts/patched.
2021-06-05 09:26:13 +02:00
c128d4f931
gnu: sbcl-cmd: Update to 20210531.
...
* gnu/packages/lisp-xyz.scm (sbcl-cmd): Update to 20210531.
2021-06-05 09:24:59 +02:00
8f12002f6e
gnu: r-sushi: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-sushi): Update to 1.30.0.
2021-06-05 09:12:58 +02:00
abe7628a05
gnu: r-guitar: Update to 2.8.0.
...
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.8.0.
2021-06-05 09:12:58 +02:00
3a5642d72e
gnu: r-chromstar: Update to 1.18.0.
...
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.18.0.
2021-06-05 09:12:58 +02:00
3e2052e7da
gnu: r-snpstats: Update to 1.42.0.
...
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.42.0.
2021-06-05 09:12:58 +02:00
8fa5a4d753
gnu: r-pathview: Update to 1.32.0.
...
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.32.0.
2021-06-05 09:12:58 +02:00
b4cea45e7c
gnu: r-ldblock: Update to 1.22.0.
...
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.22.0.
2021-06-05 09:12:58 +02:00
2860208c42
gnu: r-kegggraph: Update to 1.52.0.
...
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.52.0.
[propagated-inputs]: Add r-rgraphviz.
2021-06-05 09:12:58 +02:00
a06d13be09
gnu: r-gwascat: Update to 2.24.0.
...
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.24.0.
[propagated-inputs]: Add r-annotationhub.
2021-06-05 09:12:58 +02:00
bdfa1178b9
gnu: r-gviz: Update to 1.36.0.
...
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.36.0.
2021-06-05 09:12:57 +02:00
46b7d19dcc
gnu: r-ggbio: Update to 1.40.0.
...
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.40.0.
2021-06-05 09:12:57 +02:00
bd6d0007d9
gnu: r-erma: Update to 1.8.0.
...
* gnu/packages/bioconductor.scm (r-erma): Update to 1.8.0.
2021-06-05 09:12:57 +02:00
8ad54dc134
gnu: r-catalyst: Update to 1.16.0.
...
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.16.0.
2021-06-05 09:12:57 +02:00
2fe8673263
gnu: r-msmstests: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-msmstests): Update to 1.30.0.
2021-06-05 09:12:57 +02:00
e501608db3
gnu: r-msmseda: Update to 1.30.0.
...
* gnu/packages/bioconductor.scm (r-msmseda): Update to 1.30.0.
2021-06-05 09:12:57 +02:00
b5a387745a
gnu: r-biocio: Update to 1.2.0.
...
* gnu/packages/bioconductor.scm (r-biocio): Update to 1.2.0.
[propagated-inputs]: Remove r-genomicranges and r-rcurl.
2021-06-05 09:12:57 +02:00
aaf095825b
gnu: r-mscoreutils: Update to 1.4.0.
...
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.4.0.
[propagated-inputs]: Add r-clue.
2021-06-05 09:12:57 +02:00
47e291df84
gnu: r-delayedmatrixstats: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.14.0.
[propagated-inputs]: Remove r-biocparallel and r-hdf5array.
2021-06-05 09:12:57 +02:00
360477c202
gnu: r-sparsematrixstats: Update to 1.4.0.
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* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.4.0.
2021-06-05 09:12:57 +02:00
015ba64bc0
gnu: r-scran: Update to 1.20.1.
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* gnu/packages/bioconductor.scm (r-scran): Update to 1.20.1.
[propagated-inputs]: Remove r-biocneighbors; add r-metapod.
2021-06-05 09:12:57 +02:00
d9755a22f6
gnu: r-scater: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-scater): Update to 1.20.0.
[propagated-inputs]: Add r-beachmat, r-rcolorbrewer, and r-rtsne.
2021-06-05 09:12:57 +02:00
851894f8da
gnu: r-scuttle: Update to 1.2.0.
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* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.2.0.
2021-06-05 09:12:57 +02:00
b21a73c00b
gnu: r-singlecellexperiment: Update to 1.14.1.
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* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.14.1.
[propagated-inputs]: Add r-delayedarray and r-genomicranges.
2021-06-05 09:12:57 +02:00
71e392966a
gnu: r-chromvar: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.14.0.
2021-06-05 09:12:56 +02:00
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gnu: r-motifmatchr: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-motifmatchr): Update to 1.14.0.
2021-06-05 09:12:56 +02:00
0b6b42b6c4
gnu: r-tfbstools: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-tfbstools): Update to 1.30.0.
2021-06-05 09:12:56 +02:00
a92a277873
gnu: r-cner: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-cner): Update to 1.28.0.
2021-06-05 09:12:56 +02:00
370d020e88
gnu: r-beachmat: Update to 2.8.0.
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* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.8.0.
[propagated-inputs]: Add r-rcpp.
2021-06-05 09:12:56 +02:00
dbb929bf4a
gnu: r-hitc: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-hitc): Update to 1.36.0.
2021-06-05 09:12:56 +02:00
914bd41da9
gnu: r-fithic: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-fithic): Update to 1.18.0.
2021-06-05 09:12:56 +02:00
64b03c66ad
gnu: r-rgraphviz: Update to 2.36.0.
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* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.36.0.
2021-06-05 09:12:56 +02:00
5565b8bada
gnu: r-s4vectors: Update to 0.30.0.
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* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.30.0.
2021-06-05 09:12:56 +02:00
a78daaa572
gnu: r-preprocesscore: Update to 1.54.0.
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* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.54.0.
2021-06-05 09:12:56 +02:00
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gnu: r-icens: Update to 1.64.0.
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* gnu/packages/bioconductor.scm (r-icens): Update to 1.64.0.
2021-06-05 09:12:56 +02:00
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gnu: r-m3c: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-m3c): Update to 1.14.0.
2021-06-05 09:12:56 +02:00
06dd2fd625
gnu: r-rgreat: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-rgreat): Update to 1.24.0.
2021-06-05 09:12:56 +02:00
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gnu: r-pcatools: Update to 2.4.0.
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* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.4.0.
2021-06-05 09:12:55 +02:00
db46064043
gnu: r-biodist: Update to 1.64.0.
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* gnu/packages/bioconductor.scm (r-biodist): Update to 1.64.0.
2021-06-05 09:12:55 +02:00
36f51f8afe
gnu: r-biocworkflowtools: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.18.0.
2021-06-05 09:12:55 +02:00
e828fa21bb
gnu: r-biocset: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-biocset): Update to 1.6.0.
2021-06-05 09:12:55 +02:00
e9e4f65dc1
gnu: r-biocpkgtools: Update to 1.10.1.
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* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.10.1.
[propagated-inputs]: Remove r-rappdirs.
2021-06-05 09:12:55 +02:00
2023951c8e
gnu: r-biocor: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-biocor): Update to 1.16.0.
2021-06-05 09:12:55 +02:00
4faded238e
gnu: r-bioconcotk: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.12.0.
2021-06-05 09:12:55 +02:00
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gnu: r-multiassayexperiment: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.18.0.
2021-06-05 09:12:55 +02:00
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gnu: r-grohmm: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-grohmm): Update to 1.26.0.
2021-06-05 09:12:55 +02:00
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gnu: r-experimenthub: Update to 2.0.0.
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* gnu/packages/bioconductor.scm (r-experimenthub): Update to 2.0.0.
2021-06-05 09:12:55 +02:00
1e2c0e824c
gnu: r-biocviews: Update to 1.60.0.
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* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.60.0.
2021-06-05 09:12:55 +02:00
6513592747
gnu: r-biocstyle: Update to 2.20.0.
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* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.20.0.
2021-06-05 09:12:55 +02:00
cd9af2379d
gnu: r-biocgraph: Update to 1.54.0.
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* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.54.0.
2021-06-05 09:12:55 +02:00
834a6dbaab
gnu: r-ebarrays: Update to 2.56.0.
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* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.56.0.
2021-06-05 09:12:55 +02:00
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gnu: r-reactomepa: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.36.0.
2021-06-05 09:12:55 +02:00
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gnu: r-graphite: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-graphite): Update to 1.38.0.
[native-inputs]: Add r-knitr.
2021-06-05 09:12:55 +02:00
dc2878754c
gnu: r-biobroom: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.24.0.
2021-06-05 09:12:55 +02:00
7c990fbcb3
gnu: r-bioassayr: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.30.0.
2021-06-05 09:12:54 +02:00
02ec364cf6
gnu: r-chemminer: Update to 3.44.0.
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* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.44.0.
2021-06-05 09:12:54 +02:00
8a8f200703
gnu: r-bigpint: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.8.0.
2021-06-05 09:12:54 +02:00
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gnu: r-biggr: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-biggr): Update to 1.28.0.
2021-06-05 09:12:54 +02:00
302929da31
gnu: r-hyperdraw: Update to 1.44.0.
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* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.44.0.
2021-06-05 09:12:54 +02:00
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gnu: r-hypergraph: Update to 1.64.0.
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* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.64.0.
2021-06-05 09:12:54 +02:00
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gnu: r-rsbml: Update to 2.50.0.
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* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.50.0.
[inputs]: Remove zlib.
2021-06-05 09:12:54 +02:00
58b8ed9f08
gnu: r-bifet: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-bifet): Update to 1.12.0.
2021-06-05 09:12:54 +02:00
49403e8241
gnu: r-bicare: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-bicare): Update to 1.50.0.
2021-06-05 09:12:54 +02:00
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gnu: r-bhc: Update to 1.44.0.
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* gnu/packages/bioconductor.scm (r-bhc): Update to 1.44.0.
2021-06-05 09:12:54 +02:00
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gnu: r-bgx: Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-bgx): Update to 1.58.0.
2021-06-05 09:12:54 +02:00
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gnu: r-bgmix: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.52.0.
2021-06-05 09:12:54 +02:00
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gnu: r-universalmotif: Update to 1.10.1.
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* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.10.1.
[propagated-inputs]: Remove r-ggseqlogo and r-rdpack.
2021-06-05 09:12:54 +02:00
56ec3a6fb9
gnu: r-unifiedwmwqpcr: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.28.0.
2021-06-05 09:12:54 +02:00
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gnu: r-htqpcr: Update to 1.46.0.
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* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.46.0.
2021-06-05 09:12:54 +02:00
2ca9f4fe9b
gnu: r-variancepartition: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.22.0.
2021-06-05 09:12:54 +02:00
27e06000b1
gnu: r-variantfiltering: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.28.0.
2021-06-05 09:12:54 +02:00
7a287bc670
gnu: r-timeseriesexperiment: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.10.0.
2021-06-05 09:12:53 +02:00
99496a17f5
gnu: r-wavcluster: Update to 2.26.0.
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* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.26.0.
2021-06-05 09:12:53 +02:00
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gnu: r-reqon: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-reqon): Update to 1.38.0.
2021-06-05 09:12:53 +02:00
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gnu: r-seqbias: Update to 1.40.0.
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* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.40.0.
2021-06-05 09:12:53 +02:00
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gnu: r-bigmelon: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.18.0.
2021-06-05 09:12:53 +02:00
0cc4deb017
gnu: r-gdsfmt: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.28.0.
2021-06-05 09:12:53 +02:00
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gnu: r-watermelon: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.36.0.
2021-06-05 09:12:53 +02:00
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gnu: r-roc: Update to 1.68.0.
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* gnu/packages/bioconductor.scm (r-roc): Update to 1.68.0.
2021-06-05 09:12:53 +02:00
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gnu: r-genie3: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-genie3): Update to 1.14.0.
[propagated-inputs]: Add r-dplyr.
2021-06-05 09:12:53 +02:00
d37ae38d19
gnu: r-circrnaprofiler: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.6.0.
2021-06-05 09:12:53 +02:00
cec7972759
gnu: r-cicero: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-cicero): Update to 1.10.0.
2021-06-05 09:12:53 +02:00
f9049add35
gnu: r-rcistarget: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.12.0.
[propagated-inputs]: Add r-arrow, r-dplyr, r-genomeinfodb, r-genomicranges, and r-tibble.
2021-06-05 09:12:53 +02:00
9c0b691a29
gnu: r-depecher: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-depecher): Update to 1.8.0.
2021-06-05 09:12:53 +02:00
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gnu: r-mixomics: Update to 6.16.0.
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* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.16.0.
2021-06-05 09:12:53 +02:00
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gnu: r-flowsom: Update to 2.0.0.
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* gnu/packages/bioconductor.scm (r-flowsom): Update to 2.0.0.
[propagated-inputs]: Remove r-tsne; add r-colorramps, r-dplyr, r-ggforce, r-ggnewscale,
r-ggplot2, r-ggpointdensity, r-ggpubr, r-ggrepel, r-magrittr,
r-pheatmap, r-rlang, r-rtsne, r-scattermore, and r-tidyr.
2021-06-05 09:12:53 +02:00
53c041713a
gnu: r-opencyto: Update to 2.4.0.
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* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.4.0.
2021-06-05 09:12:53 +02:00
6489371b80
gnu: r-flowstats: Update to 4.4.0.
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* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.4.0.
2021-06-05 09:12:53 +02:00
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gnu: r-rprotobuflib: Update to 2.4.0.
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* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.4.0.
[arguments]: Adjust build phase "unpack-bundled-sources".
2021-06-05 09:12:52 +02:00
c474b4784e
gnu: r-flowclust: Update to 3.30.0.
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* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.30.0.
2021-06-05 09:12:52 +02:00
57a41cd789
gnu: r-flowviz: Update to 1.56.0.
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* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.56.0.
2021-06-05 09:12:52 +02:00
417b4108bc
gnu: r-ggcyto: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.20.0.
2021-06-05 09:12:52 +02:00
5e49dfd00e
gnu: r-flowmeans: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.52.0.
2021-06-05 09:12:52 +02:00
19855b595c
gnu: r-flowcore: Update to 2.4.0.
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* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.4.0.
2021-06-05 09:12:52 +02:00
4299d97756
gnu: r-consensusclusterplus: Update to 1.56.0.
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* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.56.0.
2021-06-05 09:12:52 +02:00
6a7589de24
gnu: r-flowutils: Update to 1.56.0.
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* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.56.0.
2021-06-05 09:12:52 +02:00
db56495f39
gnu: r-rsubread: Update to 2.6.1.
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* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.6.1.
2021-06-05 09:12:52 +02:00
758c1cd3c2
gnu: r-annotatr: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.18.0.
2021-06-05 09:12:52 +02:00
28472b62d3
gnu: r-biosigner: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.20.0.
2021-06-05 09:12:52 +02:00
3501292721
gnu: r-ropls: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-ropls): Update to 1.24.0.
2021-06-05 09:12:52 +02:00
3d9b6386fa
gnu: r-multidataset: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.20.0.
2021-06-05 09:12:52 +02:00
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gnu: r-birewire: Update to 3.24.0.
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* gnu/packages/bioconductor.scm (r-birewire): Update to 3.24.0.
2021-06-05 09:12:52 +02:00
ec78a01db3
gnu: r-rqc: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-rqc): Update to 1.26.0.
2021-06-05 09:12:52 +02:00
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gnu: r-quasr: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-quasr): Update to 1.32.0.
[propagated-inputs]: Remove r-genomicalignments and r-rhisat2.
2021-06-05 09:12:52 +02:00
274b1e2e16
gnu: r-rhisat2: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.8.0.
2021-06-05 09:12:52 +02:00
eca0820c77
gnu: r-sgseq: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.26.0.
2021-06-05 09:12:51 +02:00
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gnu: r-rbowtie: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.32.0.
2021-06-05 09:12:51 +02:00
69295659be
gnu: r-iclusterplus: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.28.0.
2021-06-05 09:12:51 +02:00
46fc0334ff
gnu: r-biocfilecache: Update to 2.0.0.
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* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.0.0.
[propagated-inputs]: Add r-filelock.
2021-06-05 09:12:51 +02:00
1dce605505
gnu: r-arrmnormalization: Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.32.0.
2021-06-05 09:12:51 +02:00
7cf4911aa2
gnu: r-progeny: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-progeny): Update to 1.14.0.
2021-06-05 09:12:51 +02:00
25ba2d38a1
gnu: r-rbowtie2: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.14.0.
2021-06-05 09:12:51 +02:00
6145252f1a
gnu: r-zfpkm: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.14.0.
2021-06-05 09:12:51 +02:00
fc400d10c0
gnu: r-zinbwave: Update to 1.14.1.
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* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.14.1.
2021-06-05 09:12:51 +02:00
34137c2145
gnu: r-webbioc: Update to 1.64.0.
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* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.64.0.
2021-06-05 09:12:51 +02:00
3a7ad7fb8a
gnu: r-widgettools: Update to 1.70.0.
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* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.70.0.
2021-06-05 09:12:51 +02:00
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gnu: r-wiggleplotr: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.16.0.
2021-06-05 09:12:51 +02:00
2da5ef4c55
gnu: r-wrench: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-wrench): Update to 1.10.0.
2021-06-05 09:12:51 +02:00
d463b4006d
gnu: r-xcms: Update to 3.14.0.
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* gnu/packages/bioconductor.scm (r-xcms): Update to 3.14.0.
2021-06-05 09:12:51 +02:00
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gnu: r-massspecwavelet: Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.58.0.
2021-06-05 09:12:51 +02:00
48737e92e4
gnu: r-roar: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-roar): Update to 1.28.0.
2021-06-05 09:12:51 +02:00
4a9e3d2fbe
gnu: r-yarn: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-yarn): Update to 1.18.0.
2021-06-05 09:12:51 +02:00
8d6a721a94
gnu: r-quantro: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-quantro): Update to 1.26.0.
2021-06-05 09:12:51 +02:00
a72006c9b0
gnu: r-gcrma: Update to 2.64.0.
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* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.64.0.
2021-06-05 09:12:50 +02:00
995c43885e
gnu: r-yapsa: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.18.0.
2021-06-05 09:12:50 +02:00
774e916736
gnu: r-somaticsignatures: Update to 2.28.0.
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* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.28.0.
2021-06-05 09:12:50 +02:00
79469116bd
gnu: r-gtrellis: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.24.0.
2021-06-05 09:12:50 +02:00
9866a9b984
gnu: r-yamss: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-yamss): Update to 1.18.0.
2021-06-05 09:12:50 +02:00
3e1c585523
gnu: r-ebimage: Update to 4.34.0.
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* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.34.0.
2021-06-05 09:12:50 +02:00
7238b33185
gnu: r-aucell: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-aucell): Update to 1.14.0.
2021-06-05 09:12:50 +02:00
51e7e0145b
gnu: r-allelicimbalance: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.30.0.
2021-06-05 09:12:50 +02:00
0cef014f7c
gnu: r-annotationtools: Update to 1.66.0.
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* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.66.0.
2021-06-05 09:12:50 +02:00
77a1c4a6aa
gnu: r-abaenrichment: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.22.0.
2021-06-05 09:12:50 +02:00
Marius Bakke
Dion Mendel
Brendan Tildesley
Jonathan Brielmaier
Antero Mejr
Tobias Geerinckx-Rice
Nicolas Goaziou
Carl Dong
Adam Kandur
Alexandr Vityazev
Xinglu Chen
Pierre Neidhardt
Guillaume Le Vaillant
Ricardo Wurmus