me
/
guix
Archived
1
0
Fork 0
Code
55,570 Commits
1 Branch
0 Tags
410 MiB
Commit Graph

647 Commits (effbf7d986f605da322db9686a236457845e66bd)

Author SHA1 Message Date
Ricardo Wurmus 5aef09bd0e
gnu: Add r-hyperdraw. 
* gnu/packages/bioconductor.scm (r-hyperdraw): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus 75a8bb3185
gnu: Add r-hypergraph. 
* gnu/packages/bioconductor.scm (r-hypergraph): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus e823337c6e
gnu: Add r-rsbml. 
* gnu/packages/bioconductor.scm (r-rsbml): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus 40fe63ad8a
gnu: Add r-bifet. 
* gnu/packages/bioconductor.scm (r-bifet): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus de9374b73c
gnu: Add r-bicare. 
* gnu/packages/bioconductor.scm (r-bicare): New variable.
 2019-12-17 20:02:17 +01:00
Ricardo Wurmus 6bd50acf41
gnu: Add r-bhc. 
* gnu/packages/bioconductor.scm (r-bhc): New variable.
 2019-12-17 20:02:16 +01:00
Ricardo Wurmus 75eb1149f3
gnu: Add r-bgx. 
* gnu/packages/bioconductor.scm (r-bgx): New variable.
 2019-12-17 20:02:16 +01:00
Ricardo Wurmus d11d6feafa
gnu: Add r-bgmix. 
* gnu/packages/bioconductor.scm (r-bgmix): New variable.
 2019-12-17 20:02:16 +01:00
Ricardo Wurmus 6e10ac0780
gnu: r-destiny: Update to 3.0.0. 
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.0.0.
[propagated-inputs]: Add r-ggplot-multistats, r-irlba, r-knn-covertree,
r-pcamethods, r-rcpphnsw, r-rspectra, r-singlecellexperiment, r-tidyr, and
r-tidyselect; remove r-igraph.
 2019-12-15 15:39:13 +01:00
Ricardo Wurmus b4ee414880
gnu: r-siggenes: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.60.0.
 2019-12-15 15:39:13 +01:00
Ricardo Wurmus 4efdac562b
gnu: r-bumphunter: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.28.0.
 2019-12-15 15:39:13 +01:00
Ricardo Wurmus dfd4287cba
gnu: r-minfi: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.32.0.
 2019-12-15 15:39:13 +01:00
Ricardo Wurmus b57cffb974
gnu: r-methylumi: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.32.0.
 2019-12-15 15:39:13 +01:00
Ricardo Wurmus 8f7bc872e1
gnu: r-lumi: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.38.0.
 2019-12-15 15:39:13 +01:00
Ricardo Wurmus a2877d6970
gnu: r-linnorm: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.10.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus 1b890c3231
gnu: r-ioniser: Update to 2.10.0. 
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.10.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus a18f325e0a
gnu: r-triform: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-triform): Update to 1.28.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus 9b72bbf784
gnu: r-varianttools: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.28.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus 9f218627d6
gnu: r-heatplus: Update to 2.32.0. 
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.32.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus c245ec3d49
gnu: r-gosemsim: Update to 2.12.0. 
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.12.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus 5ed767521c
gnu: r-anota: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-anota): Update to 1.34.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus 869965df1c
gnu: r-sigpathway: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.54.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus b4e1268c7b
gnu: r-fgsea: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.12.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus 166b3c2da6
gnu: r-dose: Update to 3.12.0. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.12.0.
 2019-12-15 15:39:12 +01:00
Ricardo Wurmus 0654a9bc3b
gnu: r-enrichplot: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.6.0.
[propagated-inputs]: Remove r-upsetr.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus 08c01b7e0e
gnu: r-clusterprofiler: Update to 3.14.0. 
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus 6374984a20
gnu: r-mlinterfaces: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus fc4a9dd579
gnu: r-annaffy: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.58.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus 4ed18ddc0f
gnu: r-a4core: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.34.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus 102b982cbe
gnu: r-a4classif: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.34.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus d6859c7c9b
gnu: r-a4preproc: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.34.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus 977a7802c1
gnu: r-a4reporting: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.34.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus 85c945aa97
gnu: r-a4base: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.34.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus 344eb4c404
gnu: r-a4: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-a4): Update to 1.34.0.
 2019-12-15 15:39:11 +01:00
Ricardo Wurmus aef4b34669
gnu: r-abseqr: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.4.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus 32b471f4a7
gnu: r-bacon: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.14.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus 6dfe5056c9
gnu: r-rgadem: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.34.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus 35a1b3ec4c
gnu: r-motiv: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-motiv): Update to 1.42.0.
[propagated-inputs]: Add r-genomicranges.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus dda936ca9a
gnu: r-motifstack: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.30.0.
[propagated-inputs]: Add r-ggplot2.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus e89f16e646
gnu: r-genomicscores: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 1.10.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus 36aecb2105
gnu: r-atacseqqc: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.1.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus 4997e0254a
gnu: r-gofuncr: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.6.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus 307667c4ef
gnu: r-abaenrichment: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.16.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus 3a731c8334
gnu: r-annotationfuncs: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.36.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus eda4908556
gnu: r-annotationtools: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.60.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus 50e6f76278
gnu: r-allelicimbalance: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.24.0.
 2019-12-15 15:39:10 +01:00
Ricardo Wurmus 3a35d27450
gnu: r-aucell: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.8.0.
[propagated-inputs]: Add r-biocgenerics and r-s4vectors.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus ca7192a1c9
gnu: r-ebimage: Update to 4.28.1. 
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.28.1.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus 3796e2442b
gnu: r-yamss: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.12.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus cf0a1cb3b4
gnu: r-gtrellis: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.18.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus 4f8e0487fc
gnu: r-somaticsignatures: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.22.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus 580e434267
gnu: r-yapsa: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.12.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus 2f90bab8d1
gnu: r-gcrma: Update to 2.58.0. 
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.58.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus a87aa2ff5a
gnu: r-simpleaffy: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.62.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus 87942b74c6
gnu: r-yaqcaffy: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.46.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus eb697ff5bb
gnu: r-quantro: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.20.0.
 2019-12-15 15:39:09 +01:00
Ricardo Wurmus 94fdea1267
gnu: r-yarn: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.12.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus f0dd0fec40
gnu: r-roar: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-roar): Update to 1.22.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus 1f0101ae01
gnu: r-xbseq: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.18.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus a07ee2584a
gnu: r-massspecwavelet: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.52.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus 4fb52345b2
gnu: r-xcms: Update to 3.8.1. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.1.
[propagated-inputs]: Add r-iranges.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus 92f40538d3
gnu: r-wrench: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.4.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus 25db5611e2
gnu: r-wiggleplotr: Update to 1.10.1. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.10.1.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus 1a2569e4cc
gnu: r-widgettools: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.64.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus 316bcd07a8
gnu: r-webbioc: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.58.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus 18b93e0350
gnu: r-zfpkm: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.8.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus c5a4c5a1ce
gnu: r-rbowtie2: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.8.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus 82d87ce02a
gnu: r-progeny: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.8.0.
 2019-12-15 15:39:08 +01:00
Ricardo Wurmus 4f0d858841
gnu: r-arrmnormalization: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.26.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus 97e317007c
gnu: r-biocfilecache: Update to 1.10.2. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.10.2.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus 049de95de7
gnu: r-iclusterplus: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.22.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus 02684becc9
gnu: r-rbowtie: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.26.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus 2cebc5d135
gnu: r-sgseq: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.20.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus 3dd2450e65
gnu: r-rhisat2: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.2.0.
[arguments]: Add phase to make package reproducible and to avoid shelling out
to 'which'.
[native-inputs]: Remove which.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus a15e52ec78
gnu: r-quasr: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.26.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus 11db82b07c
gnu: r-rqc: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.20.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus a9e5145c32
gnu: r-birewire: Update to 3.18.0. 
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.18.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus 8d766270c4
gnu: r-birta: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-birta): Update to 1.30.0.
 2019-12-15 15:39:07 +01:00
Ricardo Wurmus 643aaf7eaf
gnu: r-ropls: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.0.
[propagated-inputs]: Add r-multidataset.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 7d29dc9c7b
gnu: r-biosigner: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.0.
[propagated-inputs]: Add r-multidataset.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 700072565f
gnu: r-annotatr: Update to 1.12.1. 
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.12.1.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 4390788ea2
gnu: r-rsubread: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.0.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 482ba0b3ed
gnu: r-flowutils: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.50.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 8ad6b23f68
gnu: r-consensusclusterplus: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.50.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus b2a2f32130
gnu: r-flowcore: Update to 1.52.1. 
* gnu/packages/bioconductor.scm (r-flowcore): Update to 1.52.1.
[propagated-inputs]: Remove r-corpcor, r-graph, r-mass, and r-rrcov; add
r-cytolib.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 8042087804
gnu: r-flowmeans: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.46.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus ba71567acd
gnu: r-flowsom: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.18.0.
[propagated-inputs]: Add r-cytoml, r-flowworkspace, and r-rcolorbrewer; remove
r-flowutils.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 4930a89ad5
gnu: r-mixomics: Update to 6.10.6. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.6.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 51ffac455e
gnu: r-rcistarget: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.6.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 42b06298ef
gnu: r-cicero: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 33ce50e322
gnu: r-genie3: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.8.0.
 2019-12-15 15:39:06 +01:00
Ricardo Wurmus 3672b74f6f
gnu: r-roc: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-roc): Update to 1.62.0.
[propagated-inputs]: Add r-knitr.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus 9eade2294e
gnu: r-watermelon: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.30.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus f5ef7dd6b7
gnu: r-gdsfmt: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.22.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus 8b941a50ef
gnu: r-bigmelon: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.12.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus 2223bbc726
gnu: r-seqbias: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.34.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus 02c18abe62
gnu: r-reqon: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.32.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus c0cba4b542
gnu: r-wavcluster: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.20.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus cb734c60dc
gnu: r-timeseriesexperiment: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.4.0.
 2019-12-15 15:39:05 +01:00
Ricardo Wurmus 6f5415d5f6
gnu: r-variantfiltering: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.22.0.
 2019-12-15 15:39:05 +01:00