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59252 Commits (f292feb3c22cb0a31d33fb1c4e0b2a10fafc4999)

Author SHA1 Message Date
Efraim Flashner ee8de73814
gnu: python-scanpy: Update to 1.4.6.
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4.6.
[arguments]: Add another network based test to skip.
[propagated-inputs]: Add python-tqdm.
2020-04-26 15:03:50 +03:00
Marius Bakke 2b829898c7
gnu: python-publicsuffix2: Adjust for Guile 3.0.
* gnu/packages/python-web.scm (python-publicsuffix2): Provide explicit
destination in calls to FORMAT.
2020-04-26 13:31:16 +02:00
Marius Bakke 52bdd30407
gnu: nim: Adjust for Guile 3.0.
* gnu/packages/nim.scm (nim)[arguments]: Provide explicit destination in calls
to FORMAT.
2020-04-26 13:31:16 +02:00
Marius Bakke 05e3ed302f
gnu: tpacpi-bat: Adjust for Guile 3.0.
* gnu/packages/linux.scm (tpacpi-bat)[arguments]: Provide explicit destination
in calls to FORMAT.
2020-04-26 13:31:16 +02:00
Marius Bakke 30d0f7fa8f
gnu: nmoldyn: Adjust for Guile 3.0.
* gnu/packages/chemistry.scm (nmoldyn)[arguments]: Provide explicit
destination in calls to FORMAT.
2020-04-26 13:31:16 +02:00
Marius Bakke 02de4b1da1
gnu: calcurse: Adjust for Guile 3.0.
* gnu/packages/calcurse.scm (calcurse)[arguments]: Provide explicit
destination in calls to FORMAT.
2020-04-26 13:31:15 +02:00
Marius Bakke f989dffd2c
gnu: thinkfan: Adjust for Guile 3.0.
* gnu/packages/linux.scm (thinkfan)[arguments]: Provide explicit destination
in calls to FORMAT (destination is no longer optional with Guile 3).
2020-04-26 13:31:15 +02:00
Eric Brown 660611e5f6
gnu: Add sylpheed.
* gnu/packages/mail.scm (sylpheed): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-04-26 12:47:19 +02:00
Raghav Gururajan 0745e28d66
gnu: Add xarchiver.
* gnu/packages/compression (xarchiver): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-04-26 12:25:59 +02:00
Giacomo Leidi 0bf66cbb72
gnu: Add python-osc.
* gnu/packages/python-xyz.scm (python-osc): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-04-26 12:15:09 +02:00
Evan Straw bb85018ceb
gnu: hugin: Update to 2019.2.0.
* gnu/packages/photo.scm (hugin): Update to 2019.2.0.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-04-26 12:14:49 +02:00
Arun Isaac 018114baa7
gnu: maradns: Fix cross compilation.
* gnu/packages/dns.scm (maradns)[arguments]: Build make_32bit_tables for the
host.
2020-04-26 15:14:46 +05:30
Marius Bakke 796b387bc2
vm: Remove unused import.
* gnu/system/vm.scm: Do not import (gnu packages make-bootstrap).
2020-04-26 11:27:06 +02:00
Efraim Flashner 186f99f0f7
gnu: perl-glib: Update to 1.3292.
* gnu/packages/glib.scm (perl-glib): Update to 1.3292.
2020-04-26 10:22:14 +03:00
Leo Famulari a17e5092bc
gnu: svt-av1: Update to 0.8.2.
* gnu/packages/video.scm (svt-av1): Update to 0.8.2.
2020-04-25 22:26:49 -04:00
Vagrant Cascadian 9b7e41f2d7
gnu: arm-trusted-firmware: Update to 2.3.
* gnu/packages/firmware (make-arm-trusted-firmware): Update to 2.3.
  [source]: Remove hdcp patch.
* gnu/packages/patches/arm-trusted-firmware-disable-hdcp.patch: Remove patch.
* gnu/local.mk: Update accordingly.
2020-04-25 17:08:52 -07:00
Oleg Pykhalov 396eb9e1a9
gnu: Add sbcl-stumpwm-globalwindows.
* gnu/packages/wm.scm (sbcl-stumpwm-globalwindows): New variable.
2020-04-26 01:59:33 +03:00
Nicolas Goaziou d558de8048
doc: guix: Fix some markup.
* doc/guix.texi (Build Systems):
(Base Services):
(X Window):
(Printing Services):
(Mail Services):
(Messaging Services):
(LDAP Services):
(Virtualization Services):
(Version Control Services): Use @samp, @code and double quotes where
appropriate.
2020-04-25 23:35:44 +02:00
Nicolas Goaziou 128b136ec6
doc: cookbook: Fix quotes.
* doc/guix-cookbook.texi (Basic setup with manifests):
(Default profile):
(The benefits of manifests): Use proper quotes in regular texts.
2020-04-25 23:10:16 +02:00
Raghav Gururajan 5cca16968e
gnu: pavucontrol: Fix icons.
* gnu/packages/pulseaudio.scm (pavucontrol): Fix icons.
[build-system]: Use glib-or-gtk-build-system instead of gnu-build-system.
[inputs]: Add adwaita-icon-theme.  Re-order inputs.

Since the adwaita icon theme is hard-coded in the application, there is
no choice for the user anyway. So added adwaita-icon-theme to inputs and
changed build-system to glib-or-gtk to fix loading of icons.
2020-04-25 23:01:29 +02:00
Boris A. Dekshteyn 3a5d1c9b6b
gnu: fontmanager: Update to 0.7.7.
* gnu/packages/fontutils.scm (fontmanager): Update to 0.7.7.
2020-04-25 22:54:11 +02:00
Holger Peters b0ec8c675e
gnu: python-webob: Update to 1.8.3
* gnu/packages/python-web.scm (python-webob): Update to 1.8.3.
2020-04-25 22:38:11 +02:00
Holger Peters 82bd276d60
gnu: python-pastedeploy: Update to 2.1.0
* gnu/packages/python-web.scm (python-pastedeploy): Update to 2.1.0.
[arguments]: Add test-target.
[native-inputs]: Replace python-nose with python-pytest and python-pytest-runner.
2020-04-25 22:38:11 +02:00
Oskar Köök 731e92f0f8
gnu: elixir: Update to 1.10.3.
* gnu/packages/elixir.scm (elixir): Update to 1.10.3.
2020-04-25 22:26:48 +02:00
TomZ 813a88bb5a
gnu: flowee: Update to 2020.03.2
* gnu/packages/finance.scm (flowee): Update to 2020.03.2
2020-04-25 22:24:00 +02:00
Matthew Kraai ba11dddbfe
gnu: texlive-latex-pdfx: Fix typo.
* gnu/packages/tex.scm (texlive-latex-pdfx)[description]: Fix typo.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-04-25 22:23:20 +02:00
Florian Pelz e54acdfe16
news: Add ‘de’ translation.
* etc/news.scm: Add a ‘de’ translation.
2020-04-25 20:09:31 +00:00
Efraim Flashner e56ab46ba0
gnu: python-reportlib: Update to 3.5.42.
* gnu/packages/pdf.scm (python-reportlib): Update to 3.5.42.
2020-04-25 22:51:37 +03:00
Efraim Flashner 2d8270ad56
gnu: python-reportlib: Add missing libraries.
* gnu/packages/pdf.scm (python-reportlib)[arguments]: Add
'use-system-libart' configure flag. Add custom phase to find libraries.
[inputs]: Add libart-lgpl, font-curve-files.
2020-04-25 22:46:34 +03:00
Pierre Neidhardt 8cf6d150b4
gnu: Add osicat.
* gnu/packages/lisp-xyz.scm (closicat, sbcl-osicat): New variables.
2020-04-25 19:45:29 +02:00
Mark H Weaver f84b036305
gnu: webkitgtk: Update to 2.28.2.
* gnu/packages/webkit.scm (webkitgtk): Update to 2.28.2.
2020-04-24 23:20:09 -04:00
Mark H Weaver f2ce2d1274
gnu: linux-libre@5.6: Update deblob scripts.
* gnu/packages/linux.scm (deblob-scripts-5.6): Update to 5.6.7.
2020-04-24 19:06:13 -04:00
Pierre Langlois c10e8cf75e
gnu: u-boot: Update to 2020.04.
* gnu/packages/bootloaders (u-boot): Update to 2020.04.
  [native-inputs]: Replace sdl with sdl2.

Co-authored-by: Vagrant Cascadian <vagrant@debian.org>
2020-04-24 15:59:44 -07:00
Arun Isaac 0d36d0baea
gnu: Add maradns.
* gnu/packages/dns.scm (maradns): New variable.
2020-04-25 03:43:08 +05:30
Mark H Weaver 1317ff3259
gnu: linux-libre@4.14: Update to 4.14.177.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.177.
(linux-libre-4.14-pristine-source): Update hash.
2020-04-24 18:07:54 -04:00
Mark H Weaver 0c8941b504
gnu: linux-libre@4.9: Update to 4.9.220.
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.220.
(linux-libre-4.9-pristine-source): Update hash.
2020-04-24 18:07:18 -04:00
Mark H Weaver 9c8b5d5e08
gnu: linux-libre@4.4: Update to 4.4.220.
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.220.
(linux-libre-4.4-pristine-source): Update hash.
2020-04-24 18:06:14 -04:00
Jack Hill 45320ad808
gnu: pdfpc: Upgrade to 4.4.0
* gnu/packages/pdf.scm (pdfpc): Upgrade to 4.4.0.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2020-04-24 23:24:23 +02:00
Marius Bakke 5e57967652
gnu: python-pytest-timeout: Update to 1.3.4.
* gnu/packages/check.scm (python-pytest-timeout): Update to 1.3.4.
[arguments]: Override check phase.
[native-inputs]: Add PYTHON-PEXPECT.
2020-04-24 23:24:23 +02:00
Raghav Gururajan ddb0fef554
gnu: Add ktsuss.
* gnu/packages/admin.scm (ktsuss): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-04-24 22:10:57 +02:00
Raghav Gururajan bf37b49cdd
gnu: spacefm: Add dependencies for extra functionality.
* gnu/packages/lxde.scm (spacefm): Add dependencies for extra functionality.

Adding these inputs and making required changes to build-system+arguments;
provides icons, privilege-management and disk-management.
2020-04-24 22:03:09 +02:00
Nicolas Goaziou 2c8305d140
doc: cookbook: Use @file for file names and extensions.
* doc/guix-cookbook.texi (@samp{GUIX_PACKAGE_PATH}):
(Extended example):
(Setting up a bind mount):
(Basic setup with manifests):
(Default profile): Use @file instead of @samp or @code for file names and
extensions.
2020-04-24 18:40:04 +02:00
Nicolas Goaziou cc765e478a
doc: cookbook: Fix misuses of double spacing.
* doc/guix-cookbook.texi (Extended example):
(StumpWM):
(Basic setup with manifests): Prevent Texinfo from ending a sentence where it
should not.
(Setting up a bind mount): Add two spaces where needed.
2020-04-24 18:32:56 +02:00
Marius Bakke 9b42918edd
gnu: guix: Update to 7dd0539.
* gnu/packages/package-management.scm (guix): Update to 1.1.0-1.7dd0539.
2020-04-24 16:53:43 +02:00
Marius Bakke 7dd05396ef
doc: Ensure guix-daemon is built before creating guix-daemon.1.
* doc/local.mk ($(srcdir)/%D%/guix-daemon.1): Depend on guix-daemon$(EXEEXT)
instead of its source code.
2020-04-24 16:24:01 +02:00
Ludovic Courtès 40fd909e3d
gnu: biber: Downgrade to 2.11.
Biber 2.12 is incompatible with biblatex 3.11, which is what's currently
packaged.  This is a followup to 41a010875b.

* gnu/packages/tex.scm (biber): Downgrade to 2.11.
2020-04-24 16:22:02 +02:00
Ludovic Courtès 122b3cd68d
gnu: biber: Address test failures.
* gnu/packages/patches/biber-sortinithash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tex.scm (biber)[source]: Use it.
2020-04-24 16:21:13 +02:00
Ludovic Courtès 2520059bdb
pack: 'guix pack -R' wrapper correctly reports exit code.
Fixes <https://bugs.gnu.org/40816>.
Reported by Jan (janneke) Nieuwenhuizen <janneke@gnu.org>.

* gnu/packages/aux-files/run-in-namespace.c (main): In the 'default'
case, check 'WIFEXITED (status)' and exit with the corresponding code in
that case.  Exit with 255 in other cases.
* tests/guix-pack-relocatable.sh: Add test.
2020-04-24 16:21:13 +02:00
Ludovic Courtès 193192ca77
gnu: llvm: Add 10.0.0.
* gnu/packages/llvm.scm (llvm-10, clang-runtime-10, clang-10)
(clang-toolchain-10, llvm-9, clang-runtime-9, clang-9)
(clang-toolchain-9): New variables.
(llvm, clang, clang-runtime, clang-toolchain): Redefine as aliases to
the '-9' bindings.
* gnu/packages/patches/clang-10.0-libc-search-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2020-04-24 16:21:13 +02:00
Naga Malleswari 4ac3461a80
gnu: Add r-rxnat.
* gnu/packages/cran.scm (r-rxnat): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-04-24 15:56:54 +02:00