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2023 commits

Author SHA1 Message Date
Mathieu Othacehe
a1eca979fb
Merge remote-tracking branch 'origin/master' into core-updates-frozen. 2021-10-12 17:46:23 +00:00
Lars-Dominik Braun
b97f549b14
gnu: Update Haskell ecosystem. 
Bump packages’ versions to the lastest Stackage or Hackage
release. Since packages are interdependent, do so in a single commit.

525 packages have been updated.

These packages have been removed, because they fail to build, have no
newer version available and no dependencies:

corrode
ghc-easytest
ghc-edisonapi
ghc-edisoncore
ghc-pandoc-types
ghc-regex-tdfa-text

These have been removed, because they are no longer required:

ghc-happy-1.19.9
ghc-prettyprinter-1.6
ghc-protolude-0.3

ghc-pandoc-citeproc and pandoc-citeproc have been removed, because pandoc
does not use them any more.

Co-authored-by: Xinglu Chen <public@yoctocell.xyz>
 2021-10-08 09:13:52 +02:00
Ricardo Wurmus
12d56be31c
gnu: r-dt: Fix install location of minified JavaScript. 
Reported-by: Marcel Schilling <marcel.schilling@uni-luebeck.de>

* gnu/packages/statistics.scm (r-dt)[arguments]: Append "/js" directory to
installation location of minified JavaScript.
 2021-10-05 22:28:20 +02:00
Ricardo Wurmus
655a23fa8b
gnu: r-glinternet: Update to 1.0.12. 
* gnu/packages/statistics.scm (r-glinternet): Update to 1.0.12.
 2021-09-30 12:39:47 +02:00
Ricardo Wurmus
1322fe25a6
gnu: r-pbapply: Update to 1.5-0. 
* gnu/packages/statistics.scm (r-pbapply): Update to 1.5-0.
 2021-09-30 12:39:46 +02:00
Ricardo Wurmus
8170baded5
gnu: r-rrcov: Update to 1.6-0. 
* gnu/packages/statistics.scm (r-rrcov): Update to 1.6-0.
 2021-09-30 12:39:46 +02:00
Ricardo Wurmus
849d0f0f63
gnu: r-fastica: Update to 1.2-3. 
* gnu/packages/statistics.scm (r-fastica): Update to 1.2-3.
 2021-09-30 12:39:46 +02:00
Ricardo Wurmus
f5cfcd0110
gnu: r-sfsmisc: Update to 1.1-12. 
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-12.
 2021-09-30 12:39:46 +02:00
Ricardo Wurmus
745e373982
gnu: r-matrixstats: Update to 0.61.0. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.61.0.
 2021-09-30 12:39:46 +02:00
Ricardo Wurmus
a94068188c
gnu: r-r-utils: Update to 2.11.0. 
* gnu/packages/statistics.scm (r-r-utils): Update to 2.11.0.
 2021-09-30 12:39:46 +02:00
Ricardo Wurmus
295b984fbc
gnu: r-e1071: Update to 1.7-9. 
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-9.
 2021-09-30 12:39:46 +02:00
Ricardo Wurmus
031c6f65a2
gnu: r-rngtools: Update to 1.5.2. 
* gnu/packages/statistics.scm (r-rngtools): Update to 1.5.2.
 2021-09-30 12:39:46 +02:00
Ricardo Wurmus
0ac0dfdf7b
gnu: r-xml: Update to 3.99-0.8. 
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.8.
 2021-09-30 12:39:46 +02:00
Ricardo Wurmus
d866a9c829
gnu: r-rmarkdown: Update to 2.11. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.11.
[propagated-inputs]: Add r-jquerylib.
 2021-09-30 12:39:45 +02:00
Ricardo Wurmus
087ccfcab2
gnu: r-plotrix: Update to 3.8-2. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.8-2.
 2021-09-30 12:39:45 +02:00
Ricardo Wurmus
3a803eacce
gnu: r-hms: Update to 1.1.1. 
* gnu/packages/statistics.scm (r-hms): Update to 1.1.1.
 2021-09-30 12:39:45 +02:00
Ricardo Wurmus
5317e53ae6
gnu: r-openssl: Update to 1.4.5. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.4.5.
 2021-09-30 12:39:45 +02:00
Ricardo Wurmus
7eef4503e9
gnu: r-roxygen2: Update to 7.1.2. 
* gnu/packages/statistics.scm (r-roxygen2): Update to 7.1.2.
[propagated-inputs]: Remove r-rcpp; add r-cpp11.
 2021-09-30 12:39:45 +02:00
Ricardo Wurmus
b64c0e98f6
gnu: r-ade4: Update to 1.7-18. 
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-18.
 2021-09-30 12:39:45 +02:00
Ricardo Wurmus
60d7bdf53d
gnu: r-tibble: Update to 3.1.4. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.1.4.
 2021-09-30 12:39:45 +02:00
Ricardo Wurmus
3f631e9a6f
gnu: r-knitr: Update to 1.34. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.34.
[propagated-inputs]: Remove r-markdown.
 2021-09-30 12:39:45 +02:00
Ricardo Wurmus
7465095951
gnu: r-stringi: Update to 1.7.4. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.7.4.
 2021-09-30 12:39:45 +02:00
Ricardo Wurmus
81781becae
gnu: r-digest: Update to 0.6.28. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.28.
 2021-09-30 12:39:45 +02:00
Ricardo Wurmus
b70124ee3f
gnu: r-survival: Update to 3.2-13. 
* gnu/packages/statistics.scm (r-survival): Update to 3.2-13.
 2021-09-30 12:39:45 +02:00
Ricardo Wurmus
924dc71e57
gnu: r-mgcv: Update to 1.8-37. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-37.
 2021-09-30 12:39:44 +02:00
Ricardo Wurmus
669d047e82
gnu: r-nlme: Update to 3.1-153. 
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-153.
 2021-09-30 12:39:44 +02:00
Ricardo Wurmus
2fa8bf608e
gnu: r-lattice: Update to 0.20-45. 
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-45.
 2021-09-30 12:39:44 +02:00
Ricardo Wurmus
e370108436
gnu: r-dt: Update to 0.19. 
* gnu/packages/statistics.scm (r-dt): Update to 0.19.
[source]: Remove minified JavaScript in a snippet.
[arguments]: Minify JavaScript inputs.
[propagated-inputs]: Add r-jquerylib.
[inputs]: Add js-selectize.
[native-inputs]: Add uglifyjs, datatables-plugins, js-nouislider, and all
JavaScript source files.
[licenses]: Remove asl2.0 from the list because selectize is no longer
included.
 2021-09-30 12:39:29 +02:00
Ludovic Courtès
d9dfbf886d
Merge branch 'master' into core-updates-frozen 2021-09-07 14:19:08 +02:00
Ludovic Courtès
b949f34f31
gnu: Use the non-deprecated TeX packages. 
This commit leaves 'dblatex' and 'texlive-hyperref' as users of
deprecated packages, but these have many dependents.

* gnu/packages/bioinformatics.scm (discrover)[native-inputs]: Use
non-deprecated TeX Live packages.
(velvet)[native-inputs]: Likewise.
* gnu/packages/chez.scm (chez-scheme)[native-inputs]: Likewise.
(chez-web)[native-inputs]: Likewise.
* gnu/packages/engineering.scm (fastcap)[native-inputs]: Likewise.
* gnu/packages/guile-xyz.scm (emacsy)[native-inputs]: Likewise.
* gnu/packages/maths.scm (hypre)[native-inputs]: Likewise.
* gnu/packages/music.scm (lilypond)[native-inputs]: Likewise.
* gnu/packages/ocaml.scm (ocaml-bibtex2html)[native-inputs]: Likewise.
* gnu/packages/plotutils.scm (asymptote)[native-inputs]: Likewise.
* gnu/packages/python-xyz.scm (python-numpy-documentation)[native-inputs]:
Likewise.
(python-matplotlib-documentation)[native-inputs]: Likewise.
(python-ipython-documentation)[native-inputs]: Likewise.
(python-nbconvert)[native-inputs]: Likewise.
(python-pypandoc)[native-inputs]: Likewise.
* gnu/packages/statistics.scm (r-with-tests)[native-inputs]: Likewise.
* gnu/packages/tex.scm (texlive-pstool)[propagated-inputs]: Likewise.
(teximpatient)[native-inputs]: Likewise.
(texlive-latex-pgf)[propagated-inputs]: Likewise.
(texlive-beamer)[propagated-inputs]: Likewise.
 2021-09-06 22:02:15 +02:00
Marius Bakke
c4133c43c7
Merge branch 'master' into core-updates-frozen 
Conflicts:
	gnu/packages/algebra.scm
	gnu/packages/games.scm
	gnu/packages/golang.scm
	gnu/packages/kerberos.scm
	gnu/packages/mail.scm
	gnu/packages/python.scm
	gnu/packages/ruby.scm
	gnu/packages/scheme.scm
	gnu/packages/tex.scm
	gnu/packages/tls.scm
	gnu/packages/version-control.scm
 2021-08-12 00:30:27 +02:00
Thiago Jung Bauermann
2b6bf23c60
gnu: texlive-latex-base: Propagate ‘texlive-latex-l3backend’ 
Some packages need files from ‘texlive-latex-l3backend’ – which is a
supporting package of LaTeX3 – so propagate it from ‘texlive-latex-base’.

* gnu/packages/statistics.scm (r-with-tests)[native-inputs]: Remove
‘texlive-latex-l3backend’ from the texlive union.
* gnu/packages/tex.scm (texlive-latex-base)[propagated-inputs]: Add
‘texlive-latex-l3backend’.
(texlive-latex-xkeyval)[native-inputs]: Remove ‘texlive-latex-l3backend’.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-08-03 18:18:45 +02:00
Marius Bakke
b029be2ee0
Merge branch 'master' into core-updates-frozen 
Conflicts:
	gnu/packages/bioinformatics.scm
	gnu/packages/cmake.scm
	gnu/packages/curl.scm
	gnu/packages/emacs-xyz.scm
	gnu/packages/gpodder.scm
	gnu/packages/music.scm
	gnu/packages/patches/glibc-bootstrap-system.patch
	gnu/packages/python-xyz.scm
	gnu/packages/shells.scm
	gnu/packages/statistics.scm
 2021-07-29 22:34:57 +02:00
Ricardo Wurmus
5a1ce6cf70
gnu: r-matrixstats: Update to 0.60.0. 
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.60.0.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus
2c625a4969
gnu: r-e1071: Update to 1.7-8. 
* gnu/packages/statistics.scm (r-e1071): Update to 1.7-8.
 2021-07-29 17:11:09 +02:00
Ricardo Wurmus
8437710bbf
gnu: r-with-tests: Add missing TeX Live packages. 
* gnu/packages/statistics.scm (r-with-tests)[native-inputs]: Add
texlive-grfext and texlive-latex-l3backend to the texlive union.
 2021-07-29 13:51:01 +02:00
Ricardo Wurmus
e2ca38e611
gnu: r-ranger: Update to 0.13.1. 
* gnu/packages/statistics.scm (r-ranger): Update to 0.13.1.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus
8934c48d41
gnu: r-blob: Update to 1.2.2. 
* gnu/packages/statistics.scm (r-blob): Update to 1.2.2.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus
a30bcf6600
gnu: r-rcpparmadillo: Update to 0.10.6.0.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.10.6.0.0.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus
92c837f426
gnu: r-readr: Update to 2.0.0. 
* gnu/packages/statistics.scm (r-readr): Update to 2.0.0.
[propagated-inputs]: Remove r-bh; add r-tzdb and r-vroom.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus
8c7483196a
gnu: r-tibble: Update to 3.1.3. 
* gnu/packages/statistics.scm (r-tibble): Update to 3.1.3.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus
ee2bae9385
gnu: r-pryr: Update to 0.1.5. 
* gnu/packages/statistics.scm (r-pryr): Update to 0.1.5.
[propagated-inputs]: Add r-lobstr and r-rcpp.
[native-inputs]: Remove r-rcpp.
 2021-07-28 22:26:55 +02:00
Ricardo Wurmus
5fb96b16a4
gnu: r-stringi: Update to 1.7.3. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.7.3.
 2021-07-28 22:26:55 +02:00
Lars-Dominik Braun
9ac9bc6051
gnu: r-with-tests: Hardcode path to coreutils’ rm 
When running R in a container like this

	guix environment --no-cwd -C --ad-hoc r-minimal -- Rscript -e 'Sys.timezone()'

it would print an additional line

	sh: rm: command not found

before exiting.

* gnu/packages/statistics.scm (r-with-tests) [#:phases]: Add substitute*
to patch call to `rm` and rename phase to reflect what it does now.
 2021-07-28 22:26:19 +02:00
Ricardo Wurmus
2a775745d7
gnu: r-xml: Update to 3.99-0.7. 
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.7.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus
871c81d0e6
gnu: r-rsqlite: Update to 2.2.8. 
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.2.8.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus
e626540d41
gnu: r-rmarkdown: Update to 2.10. 
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.10.
 2021-08-24 12:28:12 +02:00
Ricardo Wurmus
5b7813fd09
gnu: r-readr: Update to 2.0.1. 
* gnu/packages/statistics.scm (r-readr): Update to 2.0.1.
 2021-08-24 12:28:11 +02:00
Ricardo Wurmus
ccdcb67353
gnu: r-r6: Update to 2.5.1. 
* gnu/packages/statistics.scm (r-r6): Update to 2.5.1.
 2021-08-24 12:28:11 +02:00
Ricardo Wurmus
54b95b640d
gnu: r-survival: Update to 3.2-12. 
* gnu/packages/statistics.scm (r-survival): Update to 3.2-12.
 2021-08-24 12:28:11 +02:00