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134774 Commits (f4dcf3018ebe2f14e5872d6462a45ba817a5f38d)

Author SHA1 Message Date
Ludovic Courtès f4dcf3018e
gnu: gdb: Update to 14.2. 
* gnu/packages/gdb.scm (gdb-14): Update to 14.2.

Change-Id: Iddf941655fe5550f6cd01978fd7998f193957ee1
 2024-04-11 12:24:21 +02:00
Ludovic Courtès cd96573b73
gnu: superlu-dist: Fix linking with the ParMETIS shim of pt-scotch. 
* gnu/packages/maths.scm (superlu-dist)[arguments]: Adjust library names
to match current ‘scotch’.

Change-Id: If64094c058cc3be58435fe1c47cc99fb0a9e1fff
 2024-04-11 12:17:30 +02:00
Ludovic Courtès 68202bcc43
gnu: pt-scotch: Include <stdint.h> so ‘parmetis.h’ is usable. 
Fixes a bug when building ‘superlu-dist’ where ‘int32_t’ would be
undefined.

* gnu/packages/maths.scm (scotch)[source]: Add ‘snippet’.

Change-Id: Id5beb2034d762727458821b93568e5b733184c00
 2024-04-11 12:17:30 +02:00
Nicolas Goaziou d564e04ded
gnu: emacs-ess: Fix build. 
* gnu/packages/statistics.scm (emacs-ess)[arguments]<#:phases>: Re-instate
DISABLE-ETESTS function, which properly disables some tests in the
"ess-test-r-eval.el" file.

Change-Id: I71a6683e9e561f03658f871cabd0cbb36c298199
 2024-04-11 10:29:29 +02:00
Vagrant Cascadian c1c9d6b3cd
gnu: diffoscope: Avoid skipping several tests. 
* gnu/packages/diffoscope.scm (diffoscope)[native-inputs]: Add perl.
 2024-04-10 13:45:40 -07:00
Ricardo Wurmus 5a95cf76e1
gnu: r-bioconcotk: Update to 1.22.2. 
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.22.2.

Change-Id: I473dc8d160d6f04eb3d90b747395d6ff73e3e9db
 2024-04-10 15:12:31 +02:00
Ricardo Wurmus 1f2308ab30
gnu: r-monocle: Update to 2.30.1. 
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.30.1.
[propagated-inputs]: Remove r-qlcmatrix.

Change-Id: Id3876045fe925a82892cd2dbe7f56a0b475f2226
 2024-04-10 15:12:31 +02:00
Ricardo Wurmus 6b1c49d07b
gnu: r-seqarray: Update to 1.42.4. 
* gnu/packages/bioconductor.scm (r-seqarray): Update to 1.42.4.

Change-Id: I3663ed7550bdd11e2f23b0497c7bbeb2d5c6cd41
 2024-04-10 15:12:31 +02:00
Ricardo Wurmus aef6e9501b
gnu: r-gsva: Update to 1.50.2. 
* gnu/packages/bioconductor.scm (r-gsva): Update to 1.50.2.

Change-Id: I24cb1b80f6afc34c970f402292a326e7ec592534
 2024-04-10 15:12:31 +02:00
Ricardo Wurmus 58e69ac117
gnu: r-annotationhub: Update to 3.10.1. 
* gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.10.1.

Change-Id: Ibe0b4d197a17514072febc97ef8eac684d884b67
 2024-04-10 15:12:30 +02:00
Ricardo Wurmus 7a6aede61e
gnu: r-bambu: Update to 3.4.1. 
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.4.1.

Change-Id: I888802cc0b75876378c59abba72442bb5927010a
 2024-04-10 15:12:30 +02:00
Ricardo Wurmus b7f1c1ae81
gnu: r-dt: Update to 0.33. 
* gnu/packages/statistics.scm (r-dt): Update to 0.33.

Change-Id: Ice2557633414595dfd4d55d996fa83a7d80a0b3a
 2024-04-10 15:12:30 +02:00
Ricardo Wurmus dfbe337d3b
gnu: r-rcpparmadillo: Update to 0.12.8.2.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.8.2.0.

Change-Id: I094907765b56a97e59fbfd3a871def732c1965cd
 2024-04-10 15:12:30 +02:00
Ricardo Wurmus 085cefc3b3
gnu: r-knitr: Update to 1.46. 
* gnu/packages/statistics.scm (r-knitr): Update to 1.46.

Change-Id: I0f6cfb86353558514fdb0e50f5626ad493e5bf1f
 2024-04-10 15:12:30 +02:00
Ricardo Wurmus 223cdffad2
gnu: r-delaporte: Update to 8.4.0. 
* gnu/packages/cran.scm (r-delaporte): Update to 8.4.0.

Change-Id: Iaa241222b4c4d84bb9ded7603f7e5cdf857e40be
 2024-04-10 15:12:30 +02:00
Ricardo Wurmus 704eb72d6b
gnu: r-stars: Update to 0.6-5. 
* gnu/packages/cran.scm (r-stars): Update to 0.6-5.

Change-Id: I459475640f0626136c7c1b72528f9e38f7dd1b19
 2024-04-10 15:12:30 +02:00
Ricardo Wurmus 81392d15c1
gnu: r-scatterpie: Update to 0.2.2. 
* gnu/packages/cran.scm (r-scatterpie): Update to 0.2.2.

Change-Id: Iefea7b841a419a129ed69d436b80bf59a7ec8c3f
 2024-04-10 15:12:30 +02:00
Ricardo Wurmus d3bb68db27
gnu: r-rsconnect: Update to 1.2.2. 
* gnu/packages/cran.scm (r-rsconnect): Update to 1.2.2.
[propagated-inputs]: Add r-pki.

Change-Id: I6dcc1b5566be6117e957366f66e0af35c2242718
 2024-04-10 15:12:30 +02:00
Ricardo Wurmus 7bd16ee23b
gnu: r-quanteda: Update to 4.0.1. 
* gnu/packages/cran.scm (r-quanteda): Update to 4.0.1.
[inputs]: Add tbb.
[propagated-inputs]: Remove r-rcppparallel; add r-lifecycle.
[native-inputs]: Add pkg-config.

Change-Id: I988b076f65801c9e9f7ebe3fa6d19566aea6308a
 2024-04-10 15:12:30 +02:00
Ricardo Wurmus 1fc8488c95
gnu: r-proxyc: Update to 0.4.1. 
* gnu/packages/cran.scm (r-proxyc): Update to 0.4.1.
[inputs]: Add tbb.
[propagated-inputs]: Remove r-rcppparallel.

Change-Id: I091b340d9defc5876ab7187b7f890cb839fb23b8
 2024-04-10 15:12:30 +02:00
Ricardo Wurmus 9c5e2a7604
gnu: r-dae: Update to 3.2.25. 
* gnu/packages/cran.scm (r-dae): Update to 3.2.25.
[propagated-inputs]: Add r-trycatchlog.

Change-Id: I9dfc382185a6f83586fcfa35c9969036cf66193a
 2024-04-10 15:12:30 +02:00
Ricardo Wurmus 00b9a0b766
gnu: r-styler: Update to 1.10.3. 
* gnu/packages/cran.scm (r-styler): Update to 1.10.3.

Change-Id: I59909dfd5534863eef1a8502dd76c9c172914d56
 2024-04-10 15:12:29 +02:00
Ricardo Wurmus affff3c220
gnu: r-nor1mix: Update to 1.3-3. 
* gnu/packages/cran.scm (r-nor1mix): Update to 1.3-3.

Change-Id: Ie05b87763a47339c713b3a3c9d4f5c4238f26bd9
 2024-04-10 15:12:29 +02:00
Ricardo Wurmus e5a28ad531
gnu: r-tmb: Update to 1.9.11. 
* gnu/packages/cran.scm (r-tmb): Update to 1.9.11.

Change-Id: I2168b4a7452ae277eacd7414049ee6fd1429c3ca
 2024-04-10 15:12:29 +02:00
Ricardo Wurmus 9d81a735f6
gnu: r-emmeans: Update to 1.10.1. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.10.1.

Change-Id: I8d072fdf667a6a267ddc4aeb173db6b88996ff85
 2024-04-10 15:12:29 +02:00
Ricardo Wurmus 98d1cce5fa
gnu: r-ggstance: Update to 0.3.7. 
* gnu/packages/cran.scm (r-ggstance): Update to 0.3.7.

Change-Id: I29c3f248afc717cf6e623db1d9a6e3cd19fe055f
 2024-04-10 15:12:29 +02:00
Ricardo Wurmus 36d643ae21
gnu: r-promises: Update to 1.3.0. 
* gnu/packages/cran.scm (r-promises): Update to 1.3.0.

Change-Id: I50c005b222d1beac05e14bf98e719c5e0b06eaf4
 2024-04-10 15:12:29 +02:00
Ricardo Wurmus 560a720df1
gnu: r-smoother: Update to 1.3. 
* gnu/packages/cran.scm (r-smoother): Update to 1.3.

Change-Id: Ia428b5c8c2896cfdae1445d0dbbe19e75c23ac77
 2024-04-10 15:12:29 +02:00
Ricardo Wurmus e5acdf788b
gnu: r-argparser: Update to 0.7.2. 
* gnu/packages/cran.scm (r-argparser): Update to 0.7.2.

Change-Id: I2dd93ed20822070b92fe48d4400eb4e87543d5a2
 2024-04-10 15:12:29 +02:00
Ricardo Wurmus c6c846c044
gnu: r-hardyweinberg: Update to 1.7.8. 
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.7.8.
[native-inputs]: Add r-knitr and r-rmarkdown.

Change-Id: I877343e49057c8218adcfcf44ad42c26556829fb
 2024-04-10 15:12:29 +02:00
Ricardo Wurmus 1b3a417cb6
gnu: r-pvclust: Update to 2.2-0. 
* gnu/packages/cran.scm (r-pvclust): Update to 2.2-0.

Change-Id: Ia3397baada3ca9ca0546be7d717f96004c214566
 2024-04-10 15:12:29 +02:00
Ricardo Wurmus 00515e7e69
gnu: r-htmltools: Update to 0.5.8.1. 
* gnu/packages/cran.scm (r-htmltools): Update to 0.5.8.1.

Change-Id: Ib40ad8eb79e10247d306196894ad4e03c04a582e
 2024-04-10 15:12:29 +02:00
Ricardo Wurmus 91d23c1acc
gnu: r-secretbase: Update to 0.4.0. 
* gnu/packages/cran.scm (r-secretbase): Update to 0.4.0.

Change-Id: I60499def8f224bb93944448e0c23186641c2c892
 2024-04-10 15:12:28 +02:00
Ricardo Wurmus c94de5b451
gnu: r-rticles: Update to 0.27. 
* gnu/packages/cran.scm (r-rticles): Update to 0.27.

Change-Id: I7191c908b8df1c98293daa152927a77b91e8dac7
 2024-04-10 15:12:28 +02:00
Ricardo Wurmus 86a28d0370
gnu: r-ggstatsplot: Update to 0.12.3. 
* gnu/packages/cran.scm (r-ggstatsplot): Update to 0.12.3.

Change-Id: If7ff6313571682ef2380acaca82038539dbca48c
 2024-04-10 15:12:28 +02:00
Ricardo Wurmus 49fc4644df
gnu: r-ggstats: Update to 0.6.0. 
* gnu/packages/cran.scm (r-ggstats): Update to 0.6.0.

Change-Id: I9997cc7342f829339b8461d609d84dc76057692b
 2024-04-10 15:12:28 +02:00
Ricardo Wurmus e3cf4366c9
gnu: r-broom-helpers: Update to 1.15.0. 
* gnu/packages/cran.scm (r-broom-helpers): Update to 1.15.0.

Change-Id: I7761a057a694119f56c3e2bd5dd6f0702136d975
 2024-04-10 15:12:28 +02:00
Ricardo Wurmus a82e38586a
gnu: r-codedepends: Update to 0.6.6. 
* gnu/packages/bioconductor.scm (r-codedepends): Update to 0.6.6.
[native-inputs]: Add r-knitr.

Change-Id: I38378f3c7406166007da48eed749526d6ddb9277
 2024-04-10 15:12:28 +02:00
Ricardo Wurmus daf31b4043
gnu: r-valr: Update to 0.8.0. 
* gnu/packages/bioconductor.scm (r-valr): Update to 0.8.0.

Change-Id: I9d5a7d2c3600f82db4b291af1485f9d075d26627
 2024-04-10 15:12:28 +02:00
Ricardo Wurmus 467e13ce50
gnu: Add r-pki. 
* gnu/packages/cran.scm (r-pki): New variable.

Change-Id: Ic8bd9a449b040e66093939e2d64b05e4f97f9bd3
 2024-04-10 15:12:28 +02:00
Ricardo Wurmus 525beb6c37
gnu: Add r-trycatchlog. 
* gnu/packages/cran.scm (r-trycatchlog): New variable.

Change-Id: I092c8ada3e139e21e07f000041a5e2fc345af977
 2024-04-10 15:12:18 +02:00
Zheng Junjie db49eed2d3
gnu: plasma: Fix QtQuickControls2 theme. 
Suggested in <https://github.com/NixOS/nixpkgs/issues/79713>.

* gnu/packages/kde-plasma.scm (plasma)[propagated-inputs]: Add qqc2-desktop-style.

Change-Id: I6bbed3ddaa339c25a996b6ab74acbc3179e28269
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2024-04-10 20:02:44 +08:00
Sughosha a1a13268b7
gnu: falkon: Enable KDE Frameworks Integration plugin. 
* gnu/packages/kde-internet.scm (falkon)[inputs]: Add kcoreaddons and kcrash.

Change-Id: I5cacc660daea8167bb072c41875d29fbf2caf74b
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2024-04-10 19:54:22 +08:00
宋文武 9acc056725
gnu: kdelibs4support: Fix tests. 
Reported in:
  <https://issues.guix.gnu.org/70100>
  <https://issues.guix.gnu.org/70176>

* gnu/packages/kde-frameworks.scm (kdelibs4support)[source]: Add snippet.

Change-Id: I12e16b8003e9b7e857492e51105d7c3580e1c35f
 2024-04-10 19:50:33 +08:00
Leo Famulari 8bfa49444d
teams: Remove Björn Höfling from their team due to inactivity. 
* etc/teams.scm (Björn Höfling): Remove from the JAVA team.

Change-Id: I384e4aebff18485ea5c5bf444a46dc88a64af72d
 2024-04-09 16:21:25 -04:00
Leo Famulari cff5ecaf67
teams: Remove Raghav Gururajan from their teams due to inactivity. 
* etc/teams.scm (Raghav Gururajan): Remove from the GNOME and MENTORS teams.

Change-Id: Ic1a583f08636f4cfd34635ab04091844b9957e08
 2024-04-09 16:21:24 -04:00
Leo Famulari 0945e9f17a
.guix-authorizations: Remove Björn Höfling due to inactivity. 
* .guix-authorizations: Remove hoebjo.

Change-Id: I270cef605de30e1924749ad143f166cca0b54e8d
 2024-04-09 16:17:23 -04:00
Leo Famulari d6a6af892a
.guix-authorizations: Remove Raghav Gururajan due to inactivity. 
* .guix-authorizations: Remove raghavgururajan.

Change-Id: Iec45c971c4ec4cd1721d9b6299dc44bc7bb1a94e
 2024-04-09 16:10:48 -04:00
Efraim Flashner 9a1abc1352
gnu: netpbm: Fix build on powerpc-linux. 
* gnu/packages/netpbm.scm (netpbm)[arguments]: Adjust the 'setup-check
phase to skip 2 tests when building for powerpc-linux.

Change-Id: Ie8f23bed0f5d442df3a19e227bbdc3a17fa77511
 2024-04-09 20:55:30 +03:00
Sharlatan Hellseher 9a4c57f55f
gnu: vale: Unbundle more packages. 
* gnu/packages/textutils.scm (vale):
[source]: Remove more vendored modules.
[native-inputs]: Add go-github-com-fatih-color, go-github-com-gobwas-glob,
go-github-com-mitchellh-go-homedir, go-github-com-yuin-goldmark,
go-golang-org-x-net-html, go-gopkg-in-ini-v1, and
go-gopkg-in-yaml-v2.

Change-Id: Ia7e87888fd286b54157382d01c8a3ca8475e3cb0
 2024-04-09 17:14:52 +01:00