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39780 Commits (f6e64282b40af529e923ae19f9b7e91571c566b9)

Author SHA1 Message Date
Ricardo Wurmus ef6e69fdec
gnu: Add dune-grid.
* gnu/packages/maths.scm (dune-grid): New variable.
2019-02-08 16:26:20 +01:00
Tobias Geerinckx-Rice 9d58e8819f
gnu: umoci: Update to 0.4.4.
* gnu/packages/virtualization.scm (umoci): Update to 0.4.4.
2019-02-08 12:09:58 +01:00
Christopher Baines 6fd72f7094
gnu: guile-squee: Fix the license.
The license originally specified in the package definition was incorrect. The
true license is the Lesser GNU General Public License.

* gnu/packages/guile-xyz.scm (guile-squee): Change license to license:lgpl3+.
2019-02-08 10:26:20 +00:00
Ludovic Courtès bc041b3e26
git: Always use the system certificates by default.
'guix pull' was always doing it, and now '--with-branch' & co. will do
it as well.

* guix/git.scm (honor-system-x509-certificates!): New procedure.
(%certificates-initialized?): New variable.
(with-libgit2): Add call to 'honor-system-x509-certificates!'.
* guix/scripts/pull.scm (honor-x509-certificates): Call
'honor-system-x509-certificates!' and fall back to
'honor-lets-encrypt-certificates!'.
2019-02-08 10:41:13 +01:00
Ludovic Courtès 024a6bfba9
guix build: '--with-branch' & co. fetch submodules.
* guix/scripts/build.scm (transform-package-source-branch)[replace]: Add
'recursive?' field to the new package.
2019-02-08 10:41:13 +01:00
Ludovic Courtès 06fff484ce
git: Add a 'recursive?' field to <git-checkout> records.
* guix/git.scm (<git-checkout>)[recursive?]: New field.
(latest-repository-commit*): Add #:recursive? and honor it.
(git-checkout-compiler): Honor the 'recursive?' field of CHECKOUT.
2019-02-08 10:41:13 +01:00
Ludovic Courtès 60cbc6a8df
git: Support recursive updates of submodules.
* guix/git.scm: Autoload (git submodule).
(url-cache-directory): Add #:recursive? and honor it.
(call-with-repository): New procedure.
(with-repository): New macro.
(update-submodules): New procedure.
(update-cached-checkout): Add #:recursive? and #:log-port and honor
them.
(latest-repository-commit): Add #:recursive? and honor it.
[dot-git?]: Recognize ".git" regular files when RECURSIVE? is true.
2019-02-08 10:41:13 +01:00
Eric Bavier 92becc3f15
build: clean-go: Do not warn about *.go files in "test-tmp".
* Makefile.am (clean-go): Ignore "test-tmp" directory.
2019-02-07 21:21:13 -06:00
Eric Bavier 7b84610e21
gnu: hdf5: Upgrade to 1.8.21.
* gnu/packages/maths.scm (hdf5): Upgrade to 1.8.21.
[source]: Make version manipulations more readable using match.
2019-02-07 21:20:47 -06:00
Eric Bavier 7fedc3fdfb
gnu: hdf5: Remove use of deprecated MPI1 symbols.
* gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch,
  gnu/packages/patches/hdf5-mpi-deprecations.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (hdf5, hdf5-1.10)[source]: Use them.
2019-02-07 21:20:47 -06:00
Eric Bavier 2bdf26f1c8
gnu: superlu-dist: Remove use of deprecated MPI1 symbols.
* gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (superlu-dist)[source]: Use it.
2019-02-07 21:20:23 -06:00
Pierre Neidhardt 674d180cfa
gnu: emacs-fish-completion: Update to 1.0.
* gnu/packages/emacs-xyz.scm (emacs-fish-completion): Update to 1.0.
2019-02-07 23:10:05 +01:00
Tim Stahel 6f8ade6ee6
gnu: Add gpx.
* gnu/packages/engineering.scm (gpx): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-02-07 22:36:01 +01:00
Ricardo Wurmus 242dbd8e5d
gnu: Add dune-geometry.
* gnu/packages/maths.scm (dune-geometry): New variable.
2019-02-07 22:36:01 +01:00
Ricardo Wurmus 3847d1f22f
gnu: Add dune-common.
* gnu/packages/maths.scm (dune-common): New variable.
2019-02-07 22:36:01 +01:00
Dan Frumin 7d60df330a
gnu: Add coq-autosubst
* gnu/packages/coq.scm (coq-autosubst): New variable.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2019-02-07 22:30:32 +01:00
Mark H Weaver d5240bc09d
gnu: linux-libre: Update to 4.20.7.
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.7.
(%linux-libre-hash): Update hash.
2019-02-07 13:56:44 -05:00
Mark H Weaver 43194fbe3c
gnu: linux-libre@4.19: Update to 4.19.20.
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.20.
(%linux-libre-4.19-hash): Update hash.
2019-02-07 13:55:42 -05:00
Mark H Weaver 848e28aab5
gnu: linux-libre@4.14: Update to 4.14.98.
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.98.
(%linux-libre-4.14-hash): Update hash.
2019-02-07 13:54:19 -05:00
Mark H Weaver 4888c21543
gnu: linux-libre@4.9: Update to 4.9.155.
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.155.
2019-02-07 13:53:27 -05:00
Mark H Weaver 2b06fcdcd7
gnu: linux-libre@4.4: Update to 4.4.173.
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.173.
2019-02-07 13:52:01 -05:00
Pierre Neidhardt 285bf324f0
gnu: Add emacs-redshank.
* gnu/packages/emacs-xyz.scm (emacs-redshank): New variable.
2019-02-07 19:29:49 +01:00
Ludovic Courtès 024d5275c5
status: Do not systematically erase the previous line.
After a successful download, we'd erase the download-progress line, and
the end result would be two empty lines following the "downloading …"
line.

Reported by Ricardo Wurmus <rekado@elephly.net> at
<https://debbugs.gnu.org/cgi/bugreport.cgi?bug=33470#27>.

* guix/status.scm (print-build-event)[erase-current-line*]: Set to a
no-op when PRINT-LOG? is true.
Move calls to 'erase-current-line*' to the 'build-succeeded' and
'build-failed' events.
2019-02-07 15:46:45 +01:00
Ludovic Courtès 9c6124f829
doc: Mention flag to get an ISO image.
* doc/guix.texi (Building the Installation Image): Add
'--file-system-type=iso9660'.
2019-02-07 15:46:45 +01:00
Ludovic Courtès b07712bfb1
gnu: openmpi: Add dependency on SLURM.
This allows users to run Open MPI programs with 'srun'.

* gnu/packages/mpi.scm (openmpi)[inputs]: Add SLURM.
[arguments]: Add "--with-pmi" to #:configure-flags.
2019-02-07 15:46:45 +01:00
Ludovic Courtès 487cbb0164
profiles: Raise an error for unmatched patterns.
Previously, "guix package -r something-not-installed" would silently
complete.  Now an error is raised.

* guix/profiles.scm (&unmatched-pattern-error): New condition type.
(manifest-matching-entries): Rewrite to raise an error when one of
PATTERNS is not matched.
* guix/ui.scm (call-with-error-handling): Handle 'unmatched-pattern-error?'.
* tests/guix-package.sh: Add test.
* tests/profiles.scm ("manifest-matching-entries"): Don't try to remove
unmatched pattern.
("manifest-matching-entries, no match"): New test.
("manifest-transaction-effects"): Remove 'remove' field.
2019-02-07 15:46:45 +01:00
Rutger Helling 89ea6252b6
gnu: flatpak: Update to 1.2.0.
* gnu/packages/package-management.scm (flatpak): Update to 1.2.0.
2019-02-07 14:45:54 +01:00
Brett Gilio a9ba0a3154
gnu: python2-rope: Update to 0.11.0
From 1e6322de0c3227827176fb460a11da21a6bba08d Mon Sep 17 00:00:00 2001
From: Brett Gilio <brettg@posteo.net>
Date: Wed, 6 Feb 2019 15:23:56 -0600
Subject: [PATCH] gnu: python2-rope: Update to 0.11.0

* gnu/packages/python-xyz.scm (python2-rope): Update to 0.11.0
2019-02-07 08:51:45 +01:00
Vagrant Cascadian 86ae491f37
gnu: python-configargparse: Update to 0.14.0.
* gnu/packages/python-xyz.scm
  (python-configargparse): Update to 0.14.0.
2019-02-07 08:39:34 +01:00
Vagrant Cascadian 746c074bbe
gnu: python-wheel: Update to 0.32.2.
* gnu/packages/python-xyz.scm (python-wheel): Update to 0.32.2.
2019-02-07 08:39:34 +01:00
Marius Bakke 69fb26d4f5
gnu: mariadb: Add comments about failing tests.
* gnu/packages/databases.scm (mariadb): Add comments.
2019-02-06 23:30:34 +01:00
Kyle Meyer 3ef29c00ed
gnu: Add datefudge.
* gnu/packages/time.scm (datefudge): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-02-06 23:06:18 +01:00
Ludovic Courtès 6732171924
gnu: iproute2: Update to 4.20.0.
* gnu/packages/linux.scm (iproute): Update to 4.20.0.
2019-02-06 23:06:18 +01:00
Ludovic Courtès 8245bb74fc
monads, gexp: Prevent redefinition of syntax parameters.
Fixes <https://bugs.gnu.org/27476>.

This fixes multi-threaded compilation of this code where syntax
parameters could end up being redefined and where a race condition could
lead a thread to see the "wrong" value of the syntax parameter.

* guix/monads.scm (define-syntax-parameter-once): New macro.
(>>=, return): Use it.
* guix/gexp.scm (define-syntax-parameter-once): New macro.
(current-imported-modules, current-imported-extensions): Use it.
2019-02-06 23:06:18 +01:00
Ludovic Courtès d591242808
daemon: Emit a 'build-succeeded' event in check mode.
Until now, something like "guix build sed -v1 --check" would not get a
'build-succeeded' event, which in turn meant that the spinner would not
be erased upon build completion.

* nix/libstore/build.cc (DerivationGoal::registerOutputs): When
'buildMode' is bmCheck and 'settings.printBuildTrace' emit a
"@ build-succeeded" trace upon success.
* tests/store.scm ("build-succeeded trace in check mode"): New test.
2019-02-06 23:06:18 +01:00
Kei Kebreau 25945666e3
gnu: abcde: Update to 2.9.3.
* gnu/packages/cdrom.scm (abcde): Update to 2.9.3.
[source]: Update snippet.
2019-02-06 16:49:12 -05:00
Ricardo Wurmus 6df215f8c8
gnu: star: Update to 2.7.0b.
* gnu/packages/bioinformatics.scm (star): Update to 2.7.0b.
[arguments]: Add "add-missing-header" build phase.
2019-02-06 21:32:16 +01:00
Kei Kebreau d11840b43e
gnu: wxmaxima: Update to 19.01.3.
* gnu/packages/maths.scm (wxmaxima): Update to 19.01.3.
2019-02-06 12:52:27 -05:00
Kei Kebreau a4362fba0e
gnu: maxima: Update to 5.42.2.
* gnu/packages/maths.scm (maxima): Update to 5.42.2.
2019-02-06 12:52:27 -05:00
Pierre Neidhardt 808136bdb6
gnu: emacs-lispyville: Update to 20181217.
* gnu/packages/emacs-xyz.scm (emacs-lispyville): Update to 20181217.
2019-02-06 16:21:49 +01:00
Pierre Neidhardt caf810d355
gnu: emacs-lispy: Update to 20190205.
* gnu/packages/emacs-xyz.scm (emacs-lispy): Update to 20190205.
2019-02-06 16:20:32 +01:00
Pierre Neidhardt de87d70e54
gnu: emacs-evil-collection: Update to 20190206.
* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 20190206.
2019-02-06 16:20:23 +01:00
Pierre Neidhardt b6a7697914
gnu: emacs-evil: Update to 1.2.14.
* gnu/packages/emacs-xyz.scm (emacs-evil): Update to 1.2.14.
2019-02-06 16:18:28 +01:00
Christopher Baines 61dafdc0fe
gnu: Add guile-squee.
* gnu/packages/guile-xyz.scm (guile-squee): New variable.
2019-02-06 13:11:35 +00:00
Rutger Helling 9b43a73600
gnu: vulkan-headers: Update to 1.1.99.
* gnu/packages/vulkan.scm (vulkan-headers): Update to 1.1.99.
* gnu/packages/vulkan.scm (vulkan-loader): Update hash.
* gnu/packages/vulkan.scm (vulkan-tools): Update to 1.1.97.0.
2019-02-06 12:10:52 +01:00
Christopher Baines e88fd8beb1
gnu: ocaml-splittable-random: Change @defn to @acronym.
I see an error when running guix package -s relating to this:

  Throw to key `parser-error' with args `(#f "Unknown command" defn)'.

* gnu/packages/ocaml.scm (ocaml-splittable-random)[description]: Change @defn
to @acronym.
2019-02-06 09:18:08 +00:00
Christopher Baines 1d5d0447d3
gnu: ocaml-spawn: Add missing @end itemize to description.
As otherwise this error appears when running things like guix package -s:

  texinfo.scm:745:27: Throw to key `parser-error' with args `(#<input: string
  35ad0e0> "EOF while reading a token " "reading char data")'.

* gnu/packages/ocaml.scm (ocaml-spawn)[description]: Add @end itemize to the
end.
2019-02-06 09:16:50 +00:00
Arun Isaac f4f8c23bae
gnu: mpop: Update to 1.4.2.
* gnu/packages/mail.scm (mpop): Update to 1.4.2.
2019-02-06 13:05:45 +05:30
Nicolas Goaziou 00e18f9fa9
gnu: musescore: Update to 3.0.2.
* gnu/packages/music.scm (musescore): Update to 3.0.2.
[source]: Add patch.
* gnu/packages/patches/musescore-fix-use_webengine.patch: New file.
* gnu/local.mk (dist_patch_DATA): Reference patch.
2019-02-05 23:11:43 +01:00
Julien Lepiller 8baa5c8b7c
gnu: Add ocaml-core-kernel.
* gnu/packages/ocaml.scm (ocaml-core-kernel): New variable.
2019-02-05 22:34:31 +01:00