dd9341ffa3
gnu: r-genomicinteractions: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.24.0.
2020-12-09 12:12:46 +01:00
35dae95110
gnu: r-interactionset: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.18.0.
2020-12-09 12:12:46 +01:00
5e719988f2
gnu: Add r-sparsematrixstats.
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* gnu/packages/bioconductor.scm (r-sparsematrixstats): New variable.
2020-12-09 12:12:46 +01:00
a23310ffc2
gnu: Add r-bluster.
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* gnu/packages/bioconductor.scm (r-bluster): New variable.
2020-12-09 12:12:45 +01:00
aca4ebe40a
gnu: r-annaffy: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.62.0.
2020-12-09 12:12:45 +01:00
16f16b5e21
gnu: Add r-msmstests.
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* gnu/packages/bioconductor.scm (r-msmstests): New variable.
2020-12-09 12:12:43 +01:00
e520c68fa9
gnu: Add r-msmseda.
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* gnu/packages/bioconductor.scm (r-msmseq): New variable.
2020-12-09 12:12:43 +01:00
fe4ce29a5c
gnu: r-beachmat: Update to 2.6.1.
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* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.1.
2020-12-09 12:12:36 +01:00
0022e9f4c0
gnu: r-ncdfflow: Fix r-rhdf5libs link.
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* gnu/packages/bioconductor.scm (r-ncdfflow): [arguments]: Avoid to have a
plain directory on the list of libraries to link.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:36 +01:00
2b224f904a
gnu: r-cytoml: Fix r-rhdf5libs linking.
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* gnu/packages/bioconductor.scm (r-cytoml): [arguments]: Avoid to have
a plain directory on the list of libraries to link.
2020-12-09 12:12:36 +01:00
ece564f07d
gnu: r-flowworkspace: Fix r-rhdf5libs linking.
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* gnu/packages/bioconductor.scm (r-flowworkspace): [arguments]: Avoid to have
a plain directory on the list of libraries to link.
2020-12-09 12:12:36 +01:00
26cf5eb568
gnu: r-hdf5array: Fix r-rhdf5libs linking.
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* gnu/packages/bioconductor.scm (r-hdf5array): [arguments]: Avoid to have a
plain directory on the list of libraries to link.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:36 +01:00
b58c4e7613
gnu: r-cytolib: Fix r-rhdf5libs linking.
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* gnu/packages/bioconductor.scm (r-cytolib): [arguments]: Avoid to have a
plain directory on the list of libraries to link.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
2020-12-09 12:12:36 +01:00
c5ae5c1c40
gnu: r-rhdf5lib: Fix build.
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* gnu/packages/bioconductor.scm (r-rhdf5lib)[arguments]: Fix build.
2020-12-09 12:12:36 +01:00
79cb6af375
gnu: r-rhdf5lib: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.12.0.
2020-12-09 12:12:36 +01:00
5992c25e7f
gnu: r-hdf5array: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.18.0.
2020-12-09 12:12:36 +01:00
c8da013780
gnu: Add r-matrixgenerics.
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* gnu/packages/bioconductor.scm (r-matrixgenerics): New variable.
2020-12-09 12:12:36 +01:00
ed44a72acf
gnu: r-hitc: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-hitc): Update to 1.34.0.
2020-12-09 12:12:35 +01:00
7105658e9c
gnu: r-fithic: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-fithic): Update to 1.16.0.
2020-12-09 12:12:35 +01:00
b6348b0edf
gnu: r-rgraphviz: Update to 2.34.0.
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* gnu/packages/bioconductor.scm (r-rgraphviz): Update to 2.34.0.
2020-12-09 12:12:35 +01:00
8fa30df02a
gnu: r-preprocesscore: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.52.0.
2020-12-09 12:12:35 +01:00
e5b2c80dc2
gnu: r-fourcseq: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-fourcseq): Update to 1.24.0.
2020-12-09 12:12:35 +01:00
3cacc3bdce
gnu: r-icens: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-icens): Update to 1.62.0.
2020-12-09 12:12:35 +01:00
126846a0da
gnu: r-m3c: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-m3c): Update to 1.12.0.
2020-12-09 12:12:35 +01:00
7a242042ae
gnu: r-rgreat: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-rgreat): Update to 1.22.0.
2020-12-09 12:12:35 +01:00
15be98c136
gnu: r-biodist: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-biodist): Update to 1.62.0.
2020-12-09 12:12:34 +01:00
7891c83c3e
gnu: r-biocworkflowtools: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.16.0.
2020-12-09 12:12:34 +01:00
feb0cbf402
gnu: r-biocset: Update to 1.4.0.
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* gnu/packages/bioconductor.scm (r-biocset): Update to 1.4.0.
[propagated-inputs]: Add r-s4vectors; remove r-rtracklayer.
2020-12-09 12:12:34 +01:00
ff4834c065
gnu: Add r-biocio.
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* gnu/packages/bioconductor.scm (r-biocio): New variable.
2020-12-09 12:12:34 +01:00
6a5d8cadee
gnu: r-biocpkgtools: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.8.0.
2020-12-09 12:12:34 +01:00
072f722f8e
gnu: r-biocor: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-biocor): Update to 1.14.0.
2020-12-09 12:12:34 +01:00
e29b15ee97
gnu: r-bioconcotk: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.10.0.
2020-12-09 12:12:34 +01:00
13d0b780c1
gnu: r-multiassayexperiment: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.16.0.
2020-12-09 12:12:34 +01:00
49a728581f
gnu: r-experimenthub: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.16.0.
2020-12-09 12:12:34 +01:00
abc18fc596
gnu: r-biocgraph: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.52.0.
2020-12-09 12:12:34 +01:00
7dced9ad01
gnu: r-bioccasestudies: Update to 1.52.0.
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* gnu/packages/bioconductor.scm (r-bioccasestudies): Update to 1.52.0.
2020-12-09 12:12:34 +01:00
b0f3bfe4ae
gnu: r-ebarrays: Update to 2.54.0.
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* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.54.0.
2020-12-09 12:12:34 +01:00
a4f4a55283
gnu: r-reactomepa: Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.34.0.
2020-12-09 12:12:34 +01:00
26224e09ae
gnu: r-graphite: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-graphite): Update to 1.36.0.
2020-12-09 12:12:34 +01:00
95e30d8f6e
gnu: r-biobroom: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.22.0.
2020-12-09 12:12:33 +01:00
2f36b0406e
gnu: r-bioassayr: Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.0.
2020-12-09 12:12:33 +01:00
95ef268142
gnu: r-chemminer: Update to 3.42.0.
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* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.0.
2020-12-09 12:12:33 +01:00
1e28867803
gnu: r-bigpint: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.6.0.
2020-12-09 12:12:33 +01:00
e80f8262f6
gnu: r-bigmemoryextras: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-bigmemoryextras): Update to 1.38.0.
2020-12-09 12:12:33 +01:00
0f94a9edb0
gnu: r-biggr: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-biggr): Update to 1.26.0.
2020-12-09 12:12:33 +01:00
249b703056
gnu: r-hyperdraw: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.42.0.
2020-12-09 12:12:33 +01:00
294fd58a42
gnu: r-hypergraph: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.62.0.
2020-12-09 12:12:33 +01:00
3320f044a3
gnu: r-rsbml: Update to 2.48.0.
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* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.48.0.
2020-12-09 12:12:33 +01:00
d57be63323
gnu: r-bifet: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-bifet): Update to 1.10.0.
2020-12-09 12:12:33 +01:00
4ec665693d
gnu: r-bicare: Update to 1.48.0.
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* gnu/packages/bioconductor.scm (r-bicare): Update to 1.48.0.
2020-12-09 12:12:33 +01:00
2219bef12f
gnu: r-bhc: Update to 1.42.0.
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* gnu/packages/bioconductor.scm (r-bhc): Update to 1.42.0.
2020-12-09 12:12:33 +01:00
3cebe2745a
gnu: r-bgx: Update to 1.56.0.
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* gnu/packages/bioconductor.scm (r-bgx): Update to 1.56.0.
2020-12-09 12:12:33 +01:00
fad5da32dc
gnu: r-bgmix: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.50.0.
2020-12-09 12:12:32 +01:00
fa7e242910
gnu: r-unifiedwmwqpcr: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.26.0.
2020-12-09 12:12:32 +01:00
949626f209
gnu: r-htqpcr: Update to 1.44.0.
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* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.44.0.
2020-12-09 12:12:32 +01:00
44ecd5f77f
gnu: r-variancepartition: Update to 1.20.0.
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* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.20.0.
2020-12-09 12:12:32 +01:00
45ea773f94
gnu: r-variantfiltering: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.26.0.
2020-12-09 12:12:32 +01:00
87f704b43c
gnu: r-timeseriesexperiment: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.8.0.
2020-12-09 12:12:32 +01:00
fd7e23b551
gnu: r-wavcluster: Update to 2.24.0.
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* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.24.0.
2020-12-09 12:12:32 +01:00
0c53f27dd6
gnu: r-reqon: Update to 1.36.0.
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* gnu/packages/bioconductor.scm (r-reqon): Update to 1.36.0.
2020-12-09 12:12:32 +01:00
42e00c0923
gnu: r-seqbias: Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.38.0.
2020-12-09 12:12:32 +01:00
a50779b8a3
gnu: r-gdsfmt: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.26.0.
2020-12-09 12:12:32 +01:00
e7b61ba7f6
gnu: r-roc: Update to 1.66.0.
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* gnu/packages/bioconductor.scm (r-roc): Update to 1.66.0.
2020-12-09 12:12:31 +01:00
5d1bd61137
gnu: r-genie3: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-genie3): Update to 1.12.0.
2020-12-09 12:12:31 +01:00
7954fe16a0
gnu: r-cicero: Update to 1.8.0.
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* gnu/packages/bioconductor.scm (r-cicero): Update to 1.8.0.
2020-12-09 12:12:31 +01:00
6481357330
gnu: r-rcistarget: Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.10.0.
2020-12-09 12:12:31 +01:00
fafaeab48b
gnu: r-depecher: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-depecher): Update to 1.6.0.
2020-12-09 12:12:31 +01:00
0e78ce36f0
gnu: r-mixomics: Update to 6.14.0.
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* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.14.0.
2020-12-09 12:12:31 +01:00
1f7ddaf0fb
gnu: r-flowsom: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.22.0.
2020-12-09 12:12:31 +01:00
63033b159a
gnu: r-cytoml: Update to 2.2.1.
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* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.2.1.
2020-12-09 12:12:31 +01:00
5abf0a0dd2
gnu: r-opencyto: Update to 2.2.0.
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* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.2.0.
2020-12-09 12:12:30 +01:00
fd11c7b80f
gnu: r-flowstats: Update to 4.2.0.
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* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.2.0.
2020-12-09 12:12:30 +01:00
1b347814f8
gnu: r-flowworkspace: Update to 4.2.0.
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* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.2.0.
[inputs]: Add zlib.
[propagated-inputs]: Add r-aws-s3 and r-aws-signature. Remove r-stringr.
2020-12-09 12:12:30 +01:00
5bab0b7eee
gnu: r-rprotobuflib: Update to 2.2.0.
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* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.2.0.
2020-12-09 12:12:30 +01:00
33c5b6d7ca
gnu: r-flowclust: Update to 3.28.0.
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* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.28.0.
2020-12-09 12:12:30 +01:00
d5a53ab76b
gnu: r-flowviz: Update to 1.54.0.
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* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.54.0.
2020-12-09 12:12:30 +01:00
eac1eaaa0f
gnu: r-ncdfflow: Update to 2.36.0.
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* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.36.0.
2020-12-09 12:12:30 +01:00
2cd78131cc
gnu: r-flowmeans: Update to 1.50.0.
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* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.50.0.
2020-12-09 12:12:30 +01:00
3f0e93b47b
gnu: r-flowcore: Update to 2.2.0.
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* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.2.0.
[propagated-inputs]: Add r-s4vectors.
2020-12-09 12:12:29 +01:00
c6ccd4fcb1
gnu: r-cytolib: Update to 2.2.0.
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* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.2.0.
[native-inputs]: Add pkg-config.
2020-12-09 12:12:29 +01:00
a49024e6af
gnu: r-consensusclusterplus: Update to 1.54.0.
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* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.54.0.
2020-12-09 12:12:29 +01:00
d361222d8f
gnu: r-flowutils: Update to 1.54.0.
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* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.54.0.
2020-12-09 12:12:29 +01:00
d764f1e7fe
gnu: r-rsubread: Update to 2.4.2.
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* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.4.2.
2020-12-09 12:12:29 +01:00
458aa44622
gnu: r-annotatr: Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.16.0.
2020-12-09 12:12:29 +01:00
26e417063f
gnu: r-biosigner: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.18.0.
2020-12-09 12:12:29 +01:00
59daf6ed12
gnu: r-ropls: Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-ropls): Update to 1.22.0.
2020-12-09 12:12:29 +01:00
e78e04d2ee
gnu: r-multidataset: Update to 1.18.0.
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* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.18.0.
2020-12-09 12:12:29 +01:00
979b1edc52
gnu: r-birewire: Update to 3.22.0.
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* gnu/packages/bioconductor.scm (r-birewire): Update to 3.22.0.
2020-12-09 12:12:29 +01:00
d8a7bf768f
gnu: r-rqc: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-rqc): Update to 1.24.0.
2020-12-09 12:12:29 +01:00
1b4c271970
gnu: r-quasr: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-quasr): Update to 1.30.0.
2020-12-09 12:12:29 +01:00
c36d888f42
gnu: r-rhisat2: Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.6.0.
2020-12-09 12:12:28 +01:00
ca0271c550
gnu: r-sgseq: Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.24.0.
2020-12-09 12:12:28 +01:00
ea86d93e8c
gnu: r-rbowtie: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.30.0.
2020-12-09 12:12:28 +01:00
4bc0675de0
gnu: r-iclusterplus: Update to 1.26.0.
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* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.26.0.
2020-12-09 12:12:28 +01:00
e65e81d285
gnu: r-biocfilecache: Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.14.0.
2020-12-09 12:12:28 +01:00
0067589a9e
gnu: r-arrmnormalization: Update to 1.30.0.
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* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.30.0.
2020-12-09 12:12:28 +01:00
d115db7f7d
gnu: r-progeny: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-progeny): Update to 1.12.0.
2020-12-09 12:12:28 +01:00
9834d1ab38
gnu: r-rbowtie2: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.12.0.
2020-12-09 12:12:28 +01:00
59fafa19f5
gnu: r-zfpkm: Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.12.0.
2020-12-09 12:12:28 +01:00
d176ad34d7
gnu: r-webbioc: Update to 1.62.0.
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* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.62.0.
2020-12-09 12:12:28 +01:00
zimoun
Ricardo Wurmus
Roel Janssen