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Author SHA1 Message Date
Marius Bakke 7d5f0795c1
gnu: python-sqlalchemy: Update to 1.3.15.
* gnu/packages/databases.scm (python-sqlalchemy): Update to 1.3.15.
2020-03-15 15:09:07 +01:00
Marius Bakke a4abed71ae
gnu: python-parso: Update to 0.6.2.
* gnu/packages/python-xyz.scm (python-parso): Update to 0.6.2.
2020-03-15 15:09:07 +01:00
Marius Bakke e3da9b2e55
gnu: Update python-natsort to 7.0.1, python2-natsort to 6.2.1.
* gnu/packages/python-xyz.scm (python-natsort): Update to 7.0.1.
(python2-natsort): Update to 6.2.1.
2020-03-15 15:09:07 +01:00
Marius Bakke 0731f943e3
gnu: Update python-seaborn to 0.10.0, python2-seaborn to 0.9.1.
* gnu/packages/python-xyz.scm (python-seaborn): Update to 0.9.0.
[source](patches): Remove.
[arguments]: Remove obsolete phase.
[properties]: New field.
(python2-seaborn): Update to 0.9.1.
2020-03-15 15:09:07 +01:00
Marius Bakke 23bc9a3586
gnu: python-joblib: Update to 0.14.1.
* gnu/packages/python-xyz.scm (python-joblib): Update to 0.14.1.
2020-03-15 15:09:07 +01:00
Marius Bakke 5a9980d55e
gnu: python-networkx: Update to 2.4.
* gnu/packages/python-xyz.scm (python-networkx): Update to 2.4.
[source](uri): Download tarball instead of zipball.
[arguments]: New field.
[native-inputs]: Remove PYTHON-NOSE and UNZIP.  Add PYTHON-PYTEST.
[properties]: New field.
(python2-networkx): Stick with version 2.2.
2020-03-15 15:09:06 +01:00
Marius Bakke c19930dc6b
gnu: python-pyrsistent: Update to 0.15.7.
* gnu/packages/python-xyz.scm (python-pyrsistent): Update to 0.15.7.
2020-03-15 15:09:06 +01:00
Marius Bakke 3987715415
gnu: python2-pandas: Fix build with Python 2.7.17.
While at it, fix the inheritance.

* gnu/packages/python-science.scm (python2-pandas): Use INHERIT instead of
PACKAGE/INHERIT.
[source](modules, snippet): New fields.
2020-03-15 15:09:06 +01:00
Marius Bakke 382550f0be
gnu: python2-scikit-learn: Downgrade to 0.20.4.
This is a follow-up to commit 546893c2965c8114e4d7cfe1de46c46664ec4b9e.

* gnu/packages/machine-learning.scm (python-scikit-learn)[properties]: New field.
(python2-scikit-learn)[version, source]: New fields.
2020-03-15 15:09:06 +01:00
Marius Bakke c085742e07
gnu: libarea: Build with cmake-minimal.
* gnu/packages/engineering.scm (libarea)[native-inputs]: Change from CMAKE to
CMAKE-MINIMAL.
2020-03-15 15:09:06 +01:00
Marius Bakke 76e0b5ba26
gnu: python-pyside: Update to 5.12.6.
* gnu/packages/qt.scm (python-shiboken-2): Update to 5.12.6.
[source]: Download tarball release instead of git repository.
[arguments]: Add phase to make files writable and update timestamps.
(python-pyside-2): Inherit version and source from PYTHON-SHIBOKEN-2.
[native-inputs]: Remove LIBCXX-6.  Rename "python-wrapper" input to "python".
Change from CMAKE to CMAKE-MINIMAL.
[arguments]: Remove libcxx substitution.  Add "-DPYTHON_EXECUTABLE" in
 #:configure-flags.
(python-pyside-2-tools)[native-inputs]: Add PYTHON-WRAPPER.
[arguments]: Set "-DPYTHON_EXECUTABLE" in #:configure-flags.  Add phase
'go-to-source-dir'.
2020-03-15 15:09:06 +01:00
Ricardo Wurmus 0b6de85a4a
gnu: zabbix-agentd: Update to 4.4.6.
* gnu/packages/monitoring.scm (zabbix-agentd): Update to 4.4.6.
2020-03-15 15:07:14 +01:00
Ricardo Wurmus a431a63537
gnu: guile-gi: Embed absolute file name of extension library.
* gnu/packages/guile-xyz.scm (guile-gi)[arguments]: Add phase
patch-references-to-extension.
2020-03-15 14:17:26 +01:00
Ricardo Wurmus b420e6deb9
services/web: nginx-configuration: Add support for global directives.
* gnu/services/web.scm (<nginx-configuration>)[global-directives]: Add field.
(emit-global-directive): New procedure.
(default-nginx-config): Use it.
* doc/guix.texi (Web Services): Document it.
2020-03-15 12:05:32 +01:00
Ricardo Wurmus 995b391013
services/web: Remove empty events directive from default-nginx-config.
* gnu/services/web.scm (default-nginx-config): Remove empty events directive.
2020-03-15 12:05:32 +01:00
Efraim Flashner 6e003bd4cc
gnu: Add python-pytest-vcr.
* gnu/packages/python-check.scm (python-pytest-vcr): New variable.
2020-03-15 08:54:31 +02:00
Efraim Flashner 3eca7ff968
gnu: Add python-blurhash.
* gnu/packages/python-crypto.scm (python-blurhash): New variable.
2020-03-15 08:52:18 +02:00
Efraim Flashner b5ffcbe1af
gnu: Add bidiv.
* gnu/packages/fribidi.scm (bidiv): New variable.
* gnu/packages/patches/bidiv-update-fribidi.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2020-03-15 08:47:21 +02:00
Leo Famulari 90beb0ed45
gnu: LibreOffice: Update to 6.4.1.2.
* gnu/packages/libreoffice.scm (libreoffice): Update to 6.4.1.2.
2020-03-14 20:33:57 -04:00
Leo Famulari 183f258ea8
Revert "gnu: VIGRA: Try to fix a build failure on the build farm."
This doesn't have any effect on our build farm, because Cuirass does not
honor the 'timeout' and 'max-silent-time' properties:

https://lists.gnu.org/archive/html/guix-devel/2020-03/msg00209.html

This reverts commit 9e89b41966.

* gnu/packages/image.scm (vigra)[properties]: Remove field.
2020-03-14 20:33:54 -04:00
Tobias Geerinckx-Rice 77386648da
gnu: gauche: Use HTTPS home page.
* gnu/packages/scheme.scm (gauche)[home-page]: Use HTTPS.
2020-03-15 01:08:08 +01:00
Tobias Geerinckx-Rice 131f0f853e
gnu: librep: Update home page.
* gnu/packages/sawfish.scm (librep)[home-page]: Follow (HTTPS)
redirection.
2020-03-15 01:08:08 +01:00
Tobias Geerinckx-Rice 416d098a0e
gnu: librep: Don't use NAME in source URI.
* gnu/packages/sawfish.scm (librep)[source]: Hard-code NAME.
2020-03-15 01:08:07 +01:00
Tobias Geerinckx-Rice 8031a55a23
gnu: sudo: Update to 1.8.31p1.
* gnu/packages/admin.scm (sudo): Update to 1.8.31p1.
2020-03-15 01:08:07 +01:00
Björn Höfling 7779ad5038
gnu: java-osgi-cmpn: Update source URI.
* gnu/packages/java.scm (java-osgi-cmpn)[source]: Update URI.
2020-03-14 23:06:35 +01:00
Björn Höfling 3344bc495d
gnu: java-qdox-1.12: Update source and home-page URI.
* gnu/packages/java.scm (java-qdox-1.12)[source]: Update URI.
[home-page]: Update URI.
2020-03-14 23:06:34 +01:00
Tobias Geerinckx-Rice 5acaec829f
gnu: pangomm: Update home page.
* gnu/packages/gtk.scm (pangomm)[home-page]: Follow (HTTPS)
redirection.
2020-03-14 22:01:40 +01:00
Tobias Geerinckx-Rice 30e8cf5f22
gnu: giblib: Use archived home page.
* gnu/packages/image.scm (giblib)[home-page]: Use Web Archive snapshot.
2020-03-14 22:01:40 +01:00
Tobias Geerinckx-Rice 1a04595498
gnu: giblib: Add mirror URL.
* gnu/packages/image.scm (giblib)[source]: Add another URL.
2020-03-14 22:01:40 +01:00
Tobias Geerinckx-Rice 0b1d71b218
gnu: ant: Use HTTPS home page.
* gnu/packages/java.scm (ant)[home-page]: Use HTTPS.
2020-03-14 22:01:40 +01:00
Tobias Geerinckx-Rice a489466b95
gnu: fio: Update to 3.19.
* gnu/packages/benchmark.scm (fio): Update to 3.19.
2020-03-14 22:01:40 +01:00
Tobias Geerinckx-Rice 20035fa7d7
gnu: cube: Use HTTPS home page.
* gnu/packages/profiling.scm (cube)[home-page]: Use HTTPS.
2020-03-14 22:01:40 +01:00
Tobias Geerinckx-Rice 189c0b33ba
gnu: talkfilters: Don't use NAME in source URI.
* gnu/packages/games.scm (talkfilters)[source]: Hard-code NAME.
2020-03-14 22:01:40 +01:00
Tobias Geerinckx-Rice edd3a25606
gnu: hyperrogue: Update to 11.3a.
* gnu/packages/games.scm (hyperrogue): Update to 11.3a.
2020-03-14 22:01:40 +01:00
Tobias Geerinckx-Rice d3be522036
gnu: openlibm: Use HTTPS home page.
* gnu/packages/maths.scm (openlibm)[home-page]: Use HTTPS.
2020-03-14 22:01:40 +01:00
Felix Gruber 6ceb771657
gnu: define dune-*-openmpi packages
* gnu/packages/maths.scm (dune-common-openmpi, dune-geometry-openmpi,
dune-istl-openmpi, dune-typetree-openmpi, dune-uggrid-openmpi,
dune-grid-openmpi, dune-alugrid-openmpi, dune-subgrid-openmpi,
dune-localfunctions-openmpi, dune-functions-openmpi,
dune-pdelab-openmpi): New variables.
(add-openmpi-to-dune-package): New function to add openmpi to the
inputs of a dune-* package and replace all dune-* packages in its
input with the corresponding dune-*-openmpi package.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-14 17:54:34 +01:00
Felix Gruber 393dc1cc0b
gnu: dune-*: remove openmpi dependency
* gnu/packages/maths.scm (dune-*)[inputs]: Remove openmpi dependency.
  [arguments]: remove code to setup openmpi for tests.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-14 17:54:34 +01:00
Efraim Flashner 3dade1d59e
gnu: gcc-9: Update to 9.3.0.
* gnu/packages/gcc.scm (gcc-9): Update to 9.3.0.
2020-03-14 18:52:41 +02:00
Ricardo Wurmus abb0ff4548
gnu: Add guile3.0-chickadee.
* gnu/packages/game-development.scm (guile3.0-chickadee): New variable.
2020-03-14 17:31:40 +01:00
Ricardo Wurmus ad1edd03ad
gnu: Add guile3.0-opengl.
* gnu/packages/gl.scm (guile3.0-opengl): New variable.
2020-03-14 17:31:40 +01:00
Ricardo Wurmus 59d10c3112
gnu: Add guile3.0-sdl2.
* gnu/packages/sdl.scm (guile3.0-sdl2): New variable.
2020-03-14 17:31:40 +01:00
Jakub Kądziołka ce226e9d8d
gnu: Add superfamiconv
* gnu/packages/graphics.scm (superfamiconv): New variable.
2020-03-14 13:14:59 +01:00
Marius Bakke aebba13c0b
Merge branch 'staging' 2020-03-14 12:57:21 +01:00
Marius Bakke 747953c430
gnu: libopenshot: Update to 0.2.5.
* gnu/packages/video.scm (libopenshot): Update to 0.2.5.
2020-03-14 11:55:34 +01:00
Marius Bakke f575668730
gnu: libopenshot-audio: Update to 0.2.0.
* gnu/packages/audio.scm (libopenshot-audio): Update to 0.2.0.
2020-03-14 11:55:34 +01:00
Marius Bakke a92a93c9a4
gnu: cppzmq: Update to 4.6.0.
* gnu/packages/networking.scm (cppzmq): Update to 4.6.0.
[arguments]: Add #:configure-flags.
2020-03-14 11:55:34 +01:00
Marius Bakke 6d84566e5e
gnu: GraphicsMagick: Update to 1.3.35.
* gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.35.
2020-03-14 11:55:33 +01:00
Marius Bakke b471337dea
gnu: suitesparse: Build with cmake-minimal.
* gnu/packages/maths.scm (suitesparse)[native-inputs]: Change from CMAKE to
CMAKE-MINIMAL.
2020-03-14 11:55:33 +01:00
Leo Famulari 554f5b6280
gnu: Add SVT-AV1.
* gnu/packages/video.scm (svt-av1): New variable.
2020-03-14 01:02:37 -04:00
Tobias Geerinckx-Rice 71441a3851
gnu: hyperestraier: Use HTTPS home page.
* gnu/packages/search.scm (hyperestraier)[home-page]: Use HTTPS.
2020-03-14 03:43:46 +01:00
Tobias Geerinckx-Rice ec4c170f94
gnu: blender: Update to 2.82a.
* gnu/packages/graphics.scm (blender): Update to 2.82a.
2020-03-14 03:43:46 +01:00
Tobias Geerinckx-Rice 954bfbdf77
gnu: cdparanoia: Use HTTPS home page.
* gnu/packages/cdrom.scm (cdparanoia)[home-page]: Use HTTPS.
2020-03-14 03:43:46 +01:00
Tobias Geerinckx-Rice 1df9bee786
gnu: scm: Use HTTPS home page.
* gnu/packages/scheme.scm (scm)[home-page]: Use HTTPS.
2020-03-14 03:43:46 +01:00
Tobias Geerinckx-Rice 450a1af293
gnu: iodine: Use HTTPS home page.
* gnu/packages/networking.scm (iodine)[home-page]: Use HTTPS.
2020-03-14 03:43:46 +01:00
Tobias Geerinckx-Rice bb45b9c258
gnu: vim-scheme: Use HTTPS home page.
* gnu/packages/vim.scm (vim-scheme)[home-page]: Use HTTPS.
2020-03-14 03:43:46 +01:00
Tobias Geerinckx-Rice a96d4897ae
gnu: ncftp: Use HTTPS home page.
* gnu/packages/ftp.scm (ncftp)[home-page]: Use HTTPS.
2020-03-14 03:43:45 +01:00
Marius Bakke bb4674b43f
Merge branch 'master' into staging 2020-03-14 01:42:02 +01:00
Marius Bakke 989d564f44
gnu: launchmon: Fix build with GCC 7.
* gnu/packages/admin.scm (launchmon)[source](modules, snippet): New fields.
2020-03-14 01:39:43 +01:00
Leo Famulari 364a1374ad
gnu: BlueZ: Fix CVE-2020-0556.
* gnu/packages/patches/bluez-CVE-2020-0556.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (bluez)[replacement]: New field.
(bluez/fixed): New variable.
2020-03-13 19:24:30 -04:00
Tobias Geerinckx-Rice e819fc0285
gnu: trio: Use HTTPS home page.
* gnu/packages/code.scm (trio)[home-page]: Use HTTPS.
2020-03-13 22:57:04 +01:00
Tobias Geerinckx-Rice 9dc6e542b5
gnu: nginx: Update to 1.17.9.
* gnu/packages/web.scm (nginx): Update to 1.17.9.
2020-03-13 22:57:04 +01:00
Tobias Geerinckx-Rice d7d2b1dcfd
gnu: miredo: Use HTTPS home page.
* gnu/packages/networking.scm (miredo)[home-page]: Use HTTPS.
2020-03-13 22:57:04 +01:00
Tobias Geerinckx-Rice 788425c2a8
gnu: taglib: Use HTTPS home page.
* gnu/packages/mp3.scm (taglib)[home-page]: Use HTTPS.
2020-03-13 22:57:04 +01:00
Tobias Geerinckx-Rice 9afbfc7a9a
gnu: perl-test2-plugin-nowarnings: Run all tests.
* gnu/packages/perl-check.scm (perl-test2-plugin-nowarnings)
[native-inputs]: Add perl-ipc-run3.
2020-03-13 22:57:04 +01:00
Tobias Geerinckx-Rice 78b2034b5b
gnu: perl-test2-suite: Correct name.
* gnu/packages/perl-check.scm (perl-test2-bundle-extended): Rename to…
(perl-test2-suite): …this.
[name]: Adjust accordingly.
(perl-test2-plugin-nowarnings)[propagated-inputs]: Use new name.
* gnu/packages/perl.scm (perl-params-validationcompiler)[native-inputs]:
Likewise.
2020-03-13 22:57:04 +01:00
Tobias Geerinckx-Rice 0d49a4bbe1
gnu: tegola: Use HTTPS home page.
* gnu/packages/geo.scm (tegola)[home-page]: Use HTTPS.
2020-03-13 22:57:04 +01:00
Tobias Geerinckx-Rice bbaaee6319
gnu: libpipeline: Update to 1.5.2.
* gnu/packages/man.scm (libpipeline): Update to 1.5.2.
2020-03-13 22:57:03 +01:00
Tobias Geerinckx-Rice 84f19b1d05
gnu: libsmpeg: Use HTTPS home page.
* gnu/packages/video.scm (libsmpeg)[home-page]: Use HTTPS.
2020-03-13 22:57:03 +01:00
Leo Famulari 3c9d89b5e2
gnu: WebKitGTK: Update to 2.28.0 [fixes CVE-2020-10018].
* gnu/packages/webkit.scm (webkitgtk): Update to 2.28.0.
2020-03-13 17:45:09 -04:00
Vagrant Cascadian f08d654af6
gnu: Add python-capablerobot-usbhub.
* gnu/packages/libusb (python-capablerobot-usbhub): New variable.
2020-03-13 13:44:19 -07:00
Alberto Eleuterio Flores Guerrero 79a4803857
gnu: Add barrage.
* gnu/packages/games.scm (barrage): New variable.
2020-03-13 21:31:40 +01:00
Ludovic Courtès f292c50191
maint: Add 'etc/release-manifest.scm'.
* etc/release-manifest.scm: New file.
* gnu/ci.scm (%cross-targets): Export.
* build-aux/check-available-binaries.scm: Remove.
* Makefile.am (EXTRA_DIST): Add 'etc/release-manifest.scm' and remove
'build-aux/check-available-binaries.scm'.
(assert-binaries-available): Rewrite using 'guix weather -m'.
2020-03-13 17:33:38 +01:00
Efraim Flashner 10b99ddf45
gnu: cadaver: Satisfy 'guix lint'.
* gnu/packages/web.scm (cadaver)[home-page]: Follow redirect.
[description]: Always use two spaces.
2020-03-13 14:26:22 +02:00
Efraim Flashner e80d1c1992
gnu: httrack: Use texi markup in description.
* gnu/packages/web.scm (httrack)[description]: Use texi markup.
2020-03-13 14:19:44 +02:00
Arun Isaac d5b0aa99f8
gnu: uim: Use emacs-substitute-variables instead of substitute*.
* gnu/packages/xorg.scm (uim)[arguments]: In the configure-uim-el phase, use
emacs-substitute-variables instead of substitute*.
2020-03-13 13:43:06 +05:30
Arun Isaac acf6168b5d
gnu: uim: Do not install elisp files in guix.d.
* gnu/packages/xorg.scm (uim)[arguments]: Pass %output/share/emacs to the
--with-lispdir configure flag. Add fix-install-path phase after install phase.
2020-03-13 13:43:06 +05:30
Tobias Geerinckx-Rice d1548cb09f
gnu: fltk: Use HTTPS home page.
* gnu/packages/fltk.scm (fltk)[home-page]: Use HTTPS.
2020-03-13 05:39:33 +01:00
Tobias Geerinckx-Rice f50ef3493e
gnu: unqlite: Use HTTPS home page.
* gnu/packages/databases.scm (unqlite)[home-page]: Use HTTPS.
2020-03-13 05:36:09 +01:00
Tobias Geerinckx-Rice b7afc63f0f
gnu: sdparm: Update to 1.11.
* gnu/packages/disk.scm (sdparm): Update to 1.11.
[source]: Hard-code name.
2020-03-13 05:36:09 +01:00
Tobias Geerinckx-Rice 16b84f54bd
gnu: bastet: Use HTTPS home page.
* gnu/packages/games.scm (bastet)[home-page]: Use HTTPS.
2020-03-13 05:36:09 +01:00
Tobias Geerinckx-Rice 287e3d3124
gnu: java-iq80-snappy: Don't use unstable tarball.
* gnu/packages/java-compression.scm (java-iq80-snappy)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
2020-03-13 05:36:09 +01:00
Tobias Geerinckx-Rice e2528a3cc1
gnu: java-snappy@1.0: Don't use unstable tarball.
* gnu/packages/java-compression.scm (java-snappy-1)[name]: Restate.
[source]: Use GIT-FETCH and GIT-FILE-NAME.
2020-03-13 05:36:09 +01:00
Tobias Geerinckx-Rice 2eed6813b6
gnu: autobuild: Use HTTPS home page.
* gnu/packages/autotools.scm (autobuild)[home-page]: Use HTTPS.
2020-03-13 05:36:09 +01:00
Tobias Geerinckx-Rice 1bc64532b7
gnu: libwebsockets: Use HTTPS home page.
* gnu/packages/web.scm (libwebsockets)[home-page]: Use HTTPS.
2020-03-13 05:36:09 +01:00
Tobias Geerinckx-Rice 136070022b
gnu: catdoc: Use HTTPS home page.
* gnu/packages/textutils.scm (catdoc)[home-page]: Use HTTPS.
2020-03-13 05:36:09 +01:00
Alex Griffin 63299f2840
gnu: Add browserpass-native.
* gnu/packages/password-utils.scm (browserpass-native): New variable.
2020-03-12 21:12:05 -05:00
Alex Griffin 42c6503d37
gnu: Add go-github-com-mattn-go-zglob.
* gnu/packages/golang.scm (go-github-com-mattn-go-zglob): New variable.
2020-03-12 21:12:04 -05:00
Alex Griffin aff9576811
gnu: Add go-github-com-rifflock-lfshook.
* gnu/packages/golang.scm (go-github-com-rifflock-lfshook): New variable.
2020-03-12 21:12:03 -05:00
Alex Griffin 8320c72587
gnu: go-github-com-sirupsen-logrus: Propagate inputs.
* gnu/packages/golang.scm (go-github-com-sirupsen-logrus): Propagate inputs.
2020-03-12 21:12:02 -05:00
Mark H Weaver ebbe8adc3f
gnu: linux-libre: Update to 5.4.25.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.25.
(linux-libre-5.4-pristine-source): Update hash.
2020-03-12 20:51:59 -04:00
Mark H Weaver 2a2bef35b8
gnu: linux-libre@4.19: Update to 4.19.109.
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.109.
(linux-libre-4.19-pristine-source): Update hash.
2020-03-12 20:51:25 -04:00
Mark H Weaver 230a59d418
gnu: linux-libre@4.14: Update to 4.14.173.
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.173.
(linux-libre-4.14-pristine-source): Update hash.
2020-03-12 20:50:52 -04:00
Mark H Weaver e0d5a43e51
gnu: linux-libre@4.9: Update to 4.9.216.
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.216.
(linux-libre-4.9-pristine-source): Update hash.
2020-03-12 20:50:24 -04:00
Mark H Weaver dcd7a97b8c
gnu: linux-libre@4.4: Update to 4.4.216.
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.216.
(linux-libre-4.4-pristine-source): Update hash.
2020-03-12 20:49:19 -04:00
Carl Dong 0f864175dc
gnu: mingw-w64-*: Update to 7.0.0.
* gnu/packages/mingw.scm (make-mingw-w64): Update to 7.0.0.
2020-03-12 15:45:28 -04:00
Alexandru-Sergiu Marton b431f6c9cc
gnu: ghc-extra: Update to 1.7.1.
* gnu/packages/haskell-xyz.scm (ghc-extra): Update to 1.7.1.

Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-12 14:10:41 -04:00
Ludovic Courtès e0dbed64c5
gnu: singularity: Do not use the "errors=remount-ro" squashfs option.
This mount option stopped being supported with Linux-libre 5.4.5:

  http://ci.guix.gnu.org/build/2056359/details

* gnu/packages/linux.scm (singularity)[source]: Remove
"errors=remount-ro" mount option from source code.
2020-03-12 18:32:16 +01:00
Ludovic Courtès 22464cf32a
gnu: singularity: Wrap programs so they find Coreutils.
* gnu/packages/linux.scm (singularity)[arguments]: Add 'set-PATH' phase.
2020-03-12 18:32:16 +01:00
Amar Singh be78906592
gnu: Add guile-torrent.
* gnu/packages/guile-xyz.scm (guile-torrent): New variable.

Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2020-03-12 15:52:41 +01:00
Efraim Flashner 0c08e4bfa1
gnu: edirect: Update to 13.3.20200128.
* gnu/packages/bioinformatics.scm (edirect): Update to 13.3.20200128.
[source]: Remove bundled certificate authority tarball.
2020-03-12 16:50:23 +02:00
Ricardo Wurmus 72e76113f7
gnu: r-car: Update to 3.0-7.
* gnu/packages/statistics.scm (r-car): Update to 3.0-7.
[native-inputs]: Add r-knitr.
2020-03-12 15:15:04 +01:00
Ricardo Wurmus 92d6c94a16
gnu: r-nloptr: Update to 1.2.2.1.
* gnu/packages/statistics.scm (r-nloptr): Update to 1.2.2.1.
2020-03-12 15:15:04 +01:00
Ricardo Wurmus 66f1fead63
gnu: r-roxygen2: Update to 7.1.0.
* gnu/packages/statistics.scm (r-roxygen2): Update to 7.1.0.
[native-inputs]: Move r-knitr from here...
[propagated-inputs]: ...to here.
2020-03-12 15:15:04 +01:00
Ricardo Wurmus 09583a0f79
gnu: r-xml2: Update to 1.2.5.
* gnu/packages/statistics.scm (r-xml2): Update to 1.2.5.
[native-inputs]: Add r-knitr.
2020-03-12 15:15:04 +01:00
Ricardo Wurmus defbaab3f8
gnu: r-tam: Update to 3.4-26.
* gnu/packages/cran.scm (r-tam): Update to 3.4-26.
2020-03-12 15:15:03 +01:00
Ricardo Wurmus 4dab179de2
gnu: r-cdm: Update to 7.5-15.
* gnu/packages/cran.scm (r-cdm): Update to 7.5-15.
2020-03-12 15:15:03 +01:00
Ricardo Wurmus ca29e40dac
gnu: r-parameters: Update to 0.6.0.
* gnu/packages/cran.scm (r-parameters): Update to 0.6.0.
[native-inputs]: Add r-knitr.
2020-03-12 15:15:03 +01:00
Ricardo Wurmus 40ac3dc394
gnu: r-graphlayouts: Update to 0.6.0.
* gnu/packages/cran.scm (r-graphlayouts): Update to 0.6.0.
2020-03-12 15:15:03 +01:00
Ricardo Wurmus 9d3d3d1bd5
gnu: r-ggfortify: Update to 0.4.9.
* gnu/packages/cran.scm (r-ggfortify): Update to  0.4.9.
[native-inputs]: Add r-knitr.
2020-03-12 15:15:03 +01:00
Ricardo Wurmus 0cc0e7e370
gnu: r-ggplotify: Update to 0.0.5.
* gnu/packages/cran.scm (r-ggplotify): Update to 0.0.5.
[native-inputs]: Add r-knitr.
2020-03-12 15:15:03 +01:00
Ricardo Wurmus f718c28cc6
gnu: r-pegas: Update to 0.13.
* gnu/packages/cran.scm (r-pegas): Update to 0.13.
2020-03-12 15:15:03 +01:00
Ricardo Wurmus a85aef2d75
gnu: r-spatialextremes: Update to 2.0-8.
* gnu/packages/cran.scm (r-spatialextremes): Update to 2.0-8.
2020-03-12 15:15:03 +01:00
Ricardo Wurmus dca5a8143f
gnu: r-tidytree: Update to 0.3.2.
* gnu/packages/cran.scm (r-tidytree): Update to 0.3.2.
[native-inputs]: Add r-knitr.
2020-03-12 15:15:03 +01:00
Ricardo Wurmus d520e4c942
gnu: r-rcppparallel: Update to 5.0.0.
* gnu/packages/cran.scm (r-rcppparallel): Update to 5.0.0.
2020-03-12 15:15:03 +01:00
Ricardo Wurmus 69a3c4ce51
gnu: r-sjplot: Update to 2.8.3.
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.3.
[propagated-inputs]: Remove r-forcats.
[native-inputs]: Remove r-knitr.
2020-03-12 15:15:03 +01:00
Ricardo Wurmus cd26e5dee8
gnu: r-catdap: Update to 1.3.5.
* gnu/packages/cran.scm (r-catdap): Update to 1.3.5.
2020-03-12 15:15:03 +01:00
Ricardo Wurmus f7306e465e
gnu: r-vim: Update to 5.1.1.
* gnu/packages/cran.scm (r-vim): Update to 5.1.1.
2020-03-12 15:15:03 +01:00
Ricardo Wurmus 117270fb51
gnu: r-vctrs: Update to 0.2.4.
* gnu/packages/cran.scm (r-vctrs): Update to 0.2.4.
[native-inputs]: Add r-knitr.
2020-03-12 15:15:03 +01:00
Ricardo Wurmus 6bd6097ed5
gnu: r-cicero: Update to 1.4.4.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.4.
[native-inputs]: Add r-knitr.
2020-03-12 15:15:02 +01:00
Ricardo Wurmus 0754fefb75
gnu: r-ggcyto: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.14.1.
[native-inputs]: Add r-knitr.
2020-03-12 15:15:02 +01:00
Ricardo Wurmus e0061f5125
gnu: r-mlinterfaces: Update to 1.66.5.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.5.
2020-03-12 15:15:02 +01:00
Ricardo Wurmus 0b692ef2c6
gnu: r-qtl: Update to 1.46-2.
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.46-2.
2020-03-12 15:15:02 +01:00
Pierre Neidhardt 04ff192ec4
gnu: Add hyperledger-iroha.
This package was co-authored with Efraim Flashner <efraim@flashner.co.il>

* gnu/packages/hyperledger.scm (hyperledger-iroha): New variable.
2020-03-12 15:34:28 +02:00
Efraim Flashner f204d155e3
gnu: Add boost-1.69.
* gnu/packages/boost.scm (boost-1.69): New hidden package.
2020-03-12 15:34:28 +02:00
Pierre Neidhardt 37109658a5
gnu: Add hyperledger-iroha-ed25519.
* gnu/packages/hyperledger.scm (hyperledger-iroha-ed25519): New variable.
2020-03-12 15:34:28 +02:00
Efraim Flashner d56d3ae704
gnu: grpc: Build shared libraries.
* gnu/packages/machine-learning.scm (grpc)[outputs]: Add static.
[arguments]: Copy configure-flags from cmake-build-system. Add custom
phases 'configure-shared, 'install-shared-libraries and 'move-static-libs
to build shared libs and move static libs to their own output.
(tensorflow)[native-inputs]: Add grpc:static.
2020-03-12 15:34:28 +02:00
Efraim Flashner b0aa58d8f1
gnu: python2-jupyter-console: Build with python2.
* gnu/packages/python-xyz.scm (python2-jupyter-console)[arguments]: Add
python keyword, set to python-2.
2020-03-12 15:34:28 +02:00
Efraim Flashner e8588a7847
gnu: python-jupyter-console: Specify python2 variant.
* gnu/packages/python-xyz.scm (python-jupyter-console)[properties]: New
field. Specify python2-jupyter-console as python2 variant.
2020-03-12 15:34:27 +02:00
Ricardo Wurmus a595399230
services: mumi-service-type: Update to latest version of mumi.
* gnu/services/web.scm (%mumi-activation): Create /var/mumi/db.
(mumi-shepherd-services): Add service for mumi worker.
2020-03-12 12:47:45 +01:00
Ricardo Wurmus c107e50a0e
gnu: mumi: Update to 0.0.0-7.6653e2d.
* gnu/packages/mail.scm (mumi): Update to 0.0.0-7.6653e2d.
[inputs]: Add guile-sqlite3.
2020-03-12 12:47:45 +01:00
Ricardo Wurmus e4cdadc18d
gnu: r-cairo: Update to 1.5-11.
* gnu/packages/statistics.scm (r-cairo): Update to 1.5-11.
2020-03-12 12:47:45 +01:00
Felix Gruber 0a703c0486
gnu: dune-istl: Build with suitesparse
* gnu/packages/maths.scm (dune-istl)[inputs]: Add suitesparse to build
additional solvers in dune-istl.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-12 11:52:38 +01:00
Felix Gruber f1f9466e33
gnu: Add dune-subgrid
* gnu/packages/maths.scm (dune-subgrid): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-12 11:52:38 +01:00
Felix Gruber 07ebb75d17
gnu: Add dune-uggrid.
* gnu/packages/maths.scm (dune-uggrid): New variable.
(dune-grid)[propagated-inputs]: Add dune-uggrid dependency, so
that the UGGrid class in dune-grid can be used by packages that
have dune-grid as input.
(dune-functions)[arguments]: Enable tests that previously weren't
built as they require dune-uggrid.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-12 11:52:38 +01:00
Felix Gruber a669f6e27b
gnu: dune-*: set up MPI for tests
* gnu/packages/maths.scm (dune-common, dune-grid, dune-istl,
dune-alugrid): [arguments]: correctly set up MPI instead of disabling
tests that require MPI.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-12 11:52:38 +01:00
Ludovic Courtès a20cfe71e9
gnu: guile-next: Enable JIT on ARMv7.
JIT support on ARMv7 is fixed by "guile-3.0-crash.patch".

* gnu/packages/guile.scm (guile-3.0)[arguments]: Remove.
2020-03-12 11:52:21 +01:00
Guillaume Le Vaillant ec73c90ee3
gnu: Add virtualpg.
* gnu/packages/geo.scm (virtualpg): New variable.
2020-03-12 10:08:45 +01:00
Guillaume Le Vaillant 69b03ecd95
gnu: jgmenu: Update to 4.1.0.
* gnu/packages/xdisorg.scm (jgmenu): Update to 4.1.0.
2020-03-12 10:08:45 +01:00
Guillaume Le Vaillant 034d9544e2
gnu: udiskie: Update to 2.1.0.
* gnu/packages/freedesktop.scm (udiskie): Update to 2.1.0.
2020-03-12 10:08:45 +01:00
Guillaume Le Vaillant 0aedcf4bc3
gnu: txr: Update to 233.
* gnu/packages/lisp.scm (txr): Update to 233.
2020-03-12 10:08:45 +01:00
Efraim Flashner d8ba1135eb
gnu: python2-ipython: Fix build.
* gnu/packages/python-xyz.scm (python2-ipython)[arguments]: Adjust
skipped tests.
2020-03-12 10:25:42 +02:00
Tobias Geerinckx-Rice bf8ee1c504
gnu: xlockmore: Update to 5.62.
* gnu/packages/xdisorg.scm (xlockmore): Update to 5.62.
2020-03-12 05:10:21 +01:00
Tobias Geerinckx-Rice 81166ee488
gnu: xlockmore: Use HTTPS home page.
* gnu/packages/xdisorg.scm (xlockmore)[home-page]: Use HTTPS.
2020-03-12 04:57:46 +01:00
Tobias Geerinckx-Rice cf580e5ebf
gnu: mame: Use HTTPS home page.
* gnu/packages/emulators.scm (mame)[home-page]: Use HTTPS.
2020-03-12 04:57:44 +01:00
Tobias Geerinckx-Rice a30f20d49c
gnu: dosbox: Use HTTPS home page.
* gnu/packages/emulators.scm (dosbox)[home-page]: Use HTTPS.
2020-03-12 04:57:43 +01:00
Tobias Geerinckx-Rice f930814afa
gnu: Add gitless.
* gnu/packages/version-control.scm (gitless): New public variable.

Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
2020-03-12 04:57:42 +01:00
Tobias Geerinckx-Rice 62f6f9d99f
gnu: faust: Use HTTPS home page.
* gnu/packages/audio.scm (faust)[home-page]: Use HTTPS.
2020-03-12 04:57:42 +01:00
Tobias Geerinckx-Rice 286ab9d3f5
gnu: rsound: Use HTTPS home page.
* gnu/packages/audio.scm (rsound)[home-page]: Use HTTPS.
2020-03-12 04:57:42 +01:00
Tobias Geerinckx-Rice dd42a2f391
gnu: libgme: Update to 0.6.3.
* gnu/packages/music.scm (libgme): Update to 0.6.3.
2020-03-12 04:57:41 +01:00
Tobias Geerinckx-Rice b5d32fb9dd
gnu: xmobar: Update to 0.33.
* gnu/packages/wm.scm (xmobar): Update to 0.33.
2020-03-12 04:57:41 +01:00
Tobias Geerinckx-Rice 094afc97c6
gnu: gptfdisk: Use HTTPS home page.
* gnu/packages/disk.scm (gptfdisk)[home-page]: Use HTTPS.
2020-03-12 04:57:41 +01:00
Tobias Geerinckx-Rice 7247b84195
gnu: ephoto: Update source and home page URIs.
* gnu/packages/enlightenment.scm (ephoto)[source]: Remove dead URI.
[home-page]: Follow (HTTPS) redirection.
2020-03-12 04:57:41 +01:00
Tobias Geerinckx-Rice 32df41beef
gnu: s6: Update to 2.9.1.0.
* gnu/packages/skarnet.scm (s6): Update to 2.9.1.0.
2020-03-12 04:57:41 +01:00
Tobias Geerinckx-Rice fe6cfa9943
gnu: simple-scan: Update to 3.36.0.
* gnu/packages/gnome.scm (simple-scan): Update to 3.36.0.
2020-03-12 04:57:40 +01:00
Tobias Geerinckx-Rice dd8cf0097e
gnu: picprog: Use HTTPS home page.
* gnu/packages/embedded.scm (picprog)[home-page]: Use HTTPS.
2020-03-12 04:57:40 +01:00
Tobias Geerinckx-Rice 0308944ab0
gnu: java-snappy: Don't use unstable tarball.
* gnu/packages/java-compression.scm (java-snappy)[source]: Use GIT-FETCH
and GIT-FILE-NAME.
[arguments]: Add ‘make-git-checkout-writable’ phase.
2020-03-12 04:57:40 +01:00
Tobias Geerinckx-Rice ca0fe294d6
gnu: java-snappy: Update to 1.1.7.3.
* gnu/packages/java-compression.scm (java-snappy): Update to 1.1.7.3.
2020-03-12 04:57:39 +01:00
Leo Famulari d7af0202a4
gnu: Borg: Update to 1.1.11.
* gnu/packages/backup.scm (borg): Update to 1.1.11.
2020-03-11 21:39:23 -04:00
Leo Famulari 4b5a0c0540
gnu: xxHash: Update to 0.7.3.
* gnu/packages/digest.scm (xxhash): Update to 0.7.3.
2020-03-11 21:39:16 -04:00
Marius Bakke 41c6e4f2b4
Merge branch 'master' into staging 2020-03-11 22:58:11 +01:00
Marius Bakke 58363ee500
gnu: Remove year range from copyright header.
* gnu/packages/python-xyz.scm: List years explicitly instead of range in
copyright line.
2020-03-11 22:56:51 +01:00
Marius Bakke 0a8655e6dc
gnu: Remove duplicate copyright line.
* gnu/packages/python-xyz.scm: Remove duplicate copyright.
2020-03-11 22:56:27 +01:00
Marius Bakke cb18f2bf31
gnu: python-cookies: Use the correct version of pytest.
* gnu/packages/python-web.scm (python-cookies)[native-inputs]: Change
PYTHON2-PYTEST to PYTHON-PYTEST.
2020-03-11 22:43:45 +01:00
Marius Bakke 6bd7d4cb74
gnu: python2-radon: Fix build.
* gnu/packages/python-xyz.scm (python-radon)[properties]: New field.
* gnu/packages/python-xyz.scm (python2-radon)[propagated-inputs]: Add
PYTHON2-CONFIGPARSER and PYTHON2-FUTURE.
2020-03-11 22:43:45 +01:00
Marius Bakke 6006727974
gnu: python-virtualenv: Update to 20.0.10.
* gnu/packages/python-xyz.scm (python-virtualenv): Update to 20.0.10.
2020-03-11 22:43:44 +01:00
Marius Bakke 7815afc958
gnu: python2-virtualenv: Fix build.
* gnu/packages/python-xyz.scm (python-virtualenv)[properties]: New field.
(python2-virtualenv)[propagated-inputs]: Add PYTHON2-CONTEXTLIB2.
[arguments]: New field.
2020-03-11 22:43:44 +01:00
Marius Bakke ebd4c25178
gnu: python-contextlib2: Update to 0.6.0.post1.
* gnu/packages/python-xyz.scm (python-contextlib2): Update to 0.6.0.post1.
2020-03-11 22:43:44 +01:00
Leo Famulari c03fc422b9
gnu: lpd8editor: Remove package.
This package has not built successfully in several months.

* gnu/packages/music.scm (lpd8editor): Remove variable.
2020-03-11 15:27:17 -04:00
Christopher Lemmer Webber dfe15d9919
gnu: Add xa.
* gnu/packages/assembly.scm (xa): New variable.
2020-03-11 15:13:30 -04:00
Guillaume Le Vaillant f7f67495ba
gnu: spatialite-gui: Fix GUI not showing up.
* gnu/packages/geo.scm (spatialite-gui)[arguments]: Add 'fix-gui' phase.
2020-03-11 19:33:25 +01:00
Marius Bakke f8cbe98e65
gnu: isc-dhcp: Fix cross-compilation.
* gnu/packages/admin.scm (isc-dhcp)[arguments]: Set BUILD_CC in
'fix-bind-cross-compilation' phase.  While at it, make the phase conditional
on %CURRENT-TARGET-SYSTEM.
2020-03-11 19:02:46 +01:00
Marius Bakke 805ac43c94
gnu: zile: Fix cross-compilation.
* gnu/packages/zile.scm (zile)[native-inputs]: Add THIS-PACKAGE when
cross-compiling.
[arguments]: Add phase when cross-compiling.
2020-03-11 18:58:48 +01:00
Marius Bakke 1ed3b845f7
gnu: python-multidict: Update to 4.7.5.
* gnu/packages/python-xyz.scm (python-multidict): Update to 4.7.5.
[arguments]: New field.
[native-inputs]: Remove PYTHON-PYTEST-RUNNER.  Add PYTHON-PYTEST-COV.
2020-03-11 18:56:46 +01:00
Damien Cassou ad2c0f5b09
gnu: Add clipmenu.
* gnu/packages/xdisorg.scm (clipmenu): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-11 18:42:09 +01:00
Damien Cassou 51f187bee5
gnu: Add clipnotify.
* gnu/packages/xdisorg.scm (clipnotify): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-11 18:42:09 +01:00
Mădălin Ionel Patrașcu 10c2ca9e4a
gnu: Add r-hrbrthemes.
* gnu/packages/cran.scm (r-hrbrthemes): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-03-11 18:00:36 +01:00
Marius Bakke 4510aeb91c
gnu: python2-sphinx: Build with python-docutils@0.14.
* gnu/packages/python-xyz.scm (python2-docutils-0.14): New public variable.
* gnu/packages/sphinx.scm (python2-sphinx)[propagated-inputs]: Change from
PYTHON2-DOCUTILS to PYTHON2-DOCUTILS-0.14.
2020-03-11 17:46:04 +01:00
Marius Bakke e8df88003d
gnu: gnutls@3.6.10: Add dependency on datefudge and util-linux.
* gnu/packages/tls.scm (gnutls-3.6.10)[native-inputs]: New field.
2020-03-11 17:44:06 +01:00
Carl Dong cdf00cf75d
gnu: nsis: Update to 3.05.
* gnu/packages/installers.scm (nsis): Update to 3.05.
2020-03-11 11:42:22 -04:00
Raghav Gururajan e05ce17dbc
gnu: Add phodav.
* gnu/packages/gnome.scm (phodav): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2020-03-11 16:12:45 +01:00
Efraim Flashner d9a2a255f9
gnu: python-pybedtools: Update to 0.8.1.
* gnu/packages/bioinformatics.scm (python-pybedtools): Update to 0.8.1.
[arguments]: Add another test to the 'disable-broken-tests phase.
(python2-pybedtools)[native-inputs]: Add python2-pathlib.
2020-03-11 16:31:33 +02:00
Efraim Flashner afb877847b
gnu: Add python2-pygraphviz.
* gnu/packages/graphviz.scm (python2-pygraphviz): New variable.
2020-03-11 16:23:52 +02:00
Efraim Flashner 173053790c
gnu: python-pyfaidx: Update to 0.5.8.
* gnu/packages/bioinformatics.scm (python-pyfaidx): Update to 0.5.8.
2020-03-11 15:45:33 +02:00
Efraim Flashner ea2822d7d6
gnu: Add python2-pyfaidx.
* gnu/packages/bioinformatics.scm (python2-pyfaidx): New variable.
2020-03-11 15:43:50 +02:00
Efraim Flashner 578e4cf465
gnu: python2-ipykernel: Downgrade to 4.10.1.
This is the last version actually supported by ipykernel.

* gnu/packages/python-xyz.scm (python2-ipython): Downgrade to 4.10.1.
[arguments]: Remove custom 'check phase.
[propagated-inputs]: Add python2-tornado, python2-traitlets.
[native-inputs]: Add python2-mock, python2-pytest-cov.
(python-ipykernel)[properties): Declare python2-ipykernel as the
python2- variant.
2020-03-11 15:19:54 +02:00
Efraim Flashner 2bc5d5d57e
gnu: python-ipython: Declare python2 variant.
* gnu/packages/python-xyz.scm (python-ipython)[properties]: Declare
python2-ipython as the python2- variant.
2020-03-11 15:07:27 +02:00
Danny Milosavljevic f255a193be
gnu: docker: Update to 19.03.7.
* gnu/packages/docker.scm (docker): Update to 19.03.7.
(docker-cli): Update to 19.03.7.
2020-03-11 12:07:19 +01:00
Roel Janssen e4b5bdf799
gnu: r-ggsignif: Fix build.
* gnu/packages/cran.scm (r-ggsignif): Add knitr to native-inputs in order to
  build the vignette.
2020-03-11 09:31:26 +01:00
Tobias Geerinckx-Rice d716a4742a
gnu: t1lib: Use HTTPS home page.
* gnu/packages/fontutils.scm (t1lib)[home-page]: Use HTTPS.
2020-03-11 03:52:12 +01:00
Tobias Geerinckx-Rice 8b6d893d17
gnu: desktop-file-utils: Update to 0.24.
* gnu/packages/freedesktop.scm (desktop-file-utils): Update to 0.24.
2020-03-11 03:52:12 +01:00
Tobias Geerinckx-Rice d4c09245ec
gnu: desktop-file-utils: Don't use NAME in source URI.
* gnu/packages/freedesktop.scm (desktop-file-utils)[source]: Hard-code NAME.
2020-03-11 03:52:12 +01:00
Tobias Geerinckx-Rice ec63b5a4c7
gnu: you-get: Update to 0.4.1410.
* gnu/packages/video.scm (you-get): Update to 0.4.1410.
2020-03-11 03:24:14 +01:00
Tobias Geerinckx-Rice 6ef143ef6e
gnu: fortune-mod: Use HTTPS home page.
* gnu/packages/games.scm (fortune-mod)[home-page]: Use HTTPS.
2020-03-11 03:01:45 +01:00
Tobias Geerinckx-Rice 6c82576e6d
gnu: grue-hunter: Use HTTPS home page.
* gnu/packages/games.scm (grue-hunter)[home-page]: Use HTTPS.
2020-03-11 03:01:45 +01:00
Tobias Geerinckx-Rice 76dc85e48c
gnu: emulation-station: Use HTTPS home page.
* gnu/packages/emulators.scm (emulation-station)[home-page]: Use HTTPS.
2020-03-11 03:01:45 +01:00
Tobias Geerinckx-Rice 68ad2a785e
gnu: dfu-programmer: Use HTTPS home page.
* gnu/packages/flashing-tools.scm (dfu-programmer)[home-page]: Use HTTPS.
2020-03-11 03:01:45 +01:00
Tobias Geerinckx-Rice 0087a2506f
gnu: rocksdb: Use HTTPS home page.
* gnu/packages/databases.scm (rocksdb)[home-page]: Use HTTPS.
2020-03-11 03:01:45 +01:00
Tobias Geerinckx-Rice e42399e80e
gnu: soundconverter: Use HTTPS home page.
* gnu/packages/gnome.scm (soundconverter)[home-page]: Use HTTPS.
2020-03-11 03:01:45 +01:00
Tobias Geerinckx-Rice 44184f3356
gnu: gd: Use HTTPS home page.
* gnu/packages/gd.scm (gd)[home-page]: Use HTTPS.
2020-03-11 03:01:45 +01:00
Tobias Geerinckx-Rice 2d3da18613
gnu: python-tomlkit: Fix typos in descriptions.
* gnu/packages/python-xyz.scm (python-tomlkit)[synopsis, description]:
Fix typos.
2020-03-11 03:01:45 +01:00
Tobias Geerinckx-Rice f4b6ce2155
gnu: python-tomlkit: Update to 0.5.11.
* gnu/packages/python-xyz.scm (python-tomlkit): Update to 0.5.11.
2020-03-11 03:01:44 +01:00
Tobias Geerinckx-Rice cebfc26986
gnu: gpxsee: Extend description.
* gnu/packages/gps.scm (gpxsee)[description]: Extend.
2020-03-11 03:01:44 +01:00
Tobias Geerinckx-Rice 3437fe1fb7
gnu: gpxsee: Update to 7.25.
* gnu/packages/gps.scm (gpxsee): Update to 7.25.
2020-03-11 02:55:15 +01:00
Tobias Geerinckx-Rice 49bb3a56e4
gnu: batctl: Update to 2020.0.
* gnu/packages/networking.scm (batctl): Update to 2020.0.
2020-03-11 02:55:15 +01:00
Tobias Geerinckx-Rice 57f85eef46
gnu: gimp: Update to 2.10.18.
* gnu/packages/gimp.scm (gimp): Update to 2.10.18.
2020-03-11 00:13:56 +01:00
Tobias Geerinckx-Rice b3ca0ee1bb
gnu: gegl: Update to 0.4.22.
* gnu/packages/gimp.scm (gegl): Update to 0.4.22.
2020-03-11 00:13:56 +01:00
Tobias Geerinckx-Rice 06271fe3ce
gnu: armagetronad: Update to 0.2.8.3.5.
* gnu/packages/games.scm (armagetronad): Update to 0.2.8.3.5.
2020-03-11 00:13:56 +01:00
Tobias Geerinckx-Rice d64d8abb5b
gnu: gx: Update to 0.14.3.
* gnu/packages/ipfs.scm (gx): Update to 0.14.3.
2020-03-11 00:13:56 +01:00
Tobias Geerinckx-Rice 9d9da65f15
gnu: nethack: Update to 3.6.6.
* gnu/packages/games.scm (nethack): Update to 3.6.6.
2020-03-11 00:13:56 +01:00
Tobias Geerinckx-Rice 806b0c2c6e
gnu: graphene: Use HTTPS home page.
* gnu/packages/gtk.scm (graphene)[home-page]: Use HTTPS.
2020-03-11 00:13:56 +01:00
Tobias Geerinckx-Rice 519dc88c75
gnu: signify: Update to 29.
* gnu/packages/crypto.scm (signify): Update to 29.
2020-03-11 00:13:56 +01:00
Tobias Geerinckx-Rice 1fc2a81ef9
gnu: execline: Update to 2.6.0.0.
* gnu/packages/skarnet.scm (execline): Update to 2.6.0.0.
2020-03-11 00:13:56 +01:00
Tobias Geerinckx-Rice aeca60707a
gnu: freealut: Use HTTPS home page.
* gnu/packages/audio.scm (freealut)[home-page]: Use HTTPS.
2020-03-11 00:13:56 +01:00
Tobias Geerinckx-Rice 8173e7a02a
gnu: git-flow: Use HTTPS home page.
* gnu/packages/version-control.scm (git-flow)[home-page]: Use HTTPS.
2020-03-11 00:13:56 +01:00
Tobias Geerinckx-Rice d518851710
gnu: Use HTTPS for archive.xfce.org sources.
* gnu/packages/xfce.scm (gtk-xfce-engine, xfce4-xkb-plugin)
(xfce4-settings, thunar, ristretto, orage, xfburn, mousepad)
(xfce4-screenshooter, xfce4-screensaver, xfce4-cpugraph-plugin)
(xfce4-eyes-plugin, xfce4-equake-plugin, xfce4-datetime-plugin)
(xfce4-calculator-plugin, xfce4-cpufreq-plugin, xfce4-diskperf-plugin)
(xfce4-embed-plugin, xfce4-fsguard-plugin, xfce4-genmon-plugin)
(xfce4-kbdleds-plugin, xfce4-mailwatch-plugin, xfce4-mpc-plugin)
(xfce4-mount-plugin, xfce4-netload-plugin, xfce4-places-plugin)
(xfce4-smartbookmark-plugin, xfce4-statusnotifier-plugin)
(xfce4-stopwatch-plugin, xfce4-systemload-plugin)
(xfce4-time-out-plugin, xfce4-timer-plugin, xfce4-verve-plugin)
(xfce4-wavelan-plugin, xfce4-weather-plugin))[source]: Use HTTPS.
2020-03-11 00:13:56 +01:00
Tobias Geerinckx-Rice 19153f2915
gnu: xfce4-statusnotifier-plugin: Update to 0.2.2.
* gnu/packages/xfce.scm (xfce4-statusnotifier-plugin): Update to 0.2.2.
2020-03-11 00:13:55 +01:00
Tobias Geerinckx-Rice c9cd6d2fb2
gnu: Use HTTPS for skarnet.org sources.
* gnu/packages/skarnet.scm (skalibs, execline, s6, s6-dns)
(s6-networking, s6-rc, s6-portable-utils, s6-linux-init, s6-linux-utils)
[source]: Use HTTPS.
2020-03-11 00:13:55 +01:00
Tobias Geerinckx-Rice b486bf7811
gnu: skalibs: Update to 2.9.2.0.
* gnu/packages/skarnet.scm (skalibs): Update to 2.9.2.0.
2020-03-11 00:13:55 +01:00
Tobias Geerinckx-Rice 92a4f18f07
gnu: s6-dns: Update to 2.3.2.0.
* gnu/packages/skarnet.scm (s6-dns): Update to 2.3.2.0.
2020-03-11 00:13:55 +01:00
Leo Famulari 7cfcc38f41
gnu: Certbot, python-acme: Update to 1.3.0.
* gnu/packages/tls.scm (certbot, python-acme): Update to 1.3.0.
2020-03-10 18:35:57 -04:00
Björn Höfling 60f5ab0bb6
gnu: java-osgi-namespace-contract: Update source URI.
* gnu/packages/java.scm (java-osgi-namespace-contract)[source]: Update URI.
2020-03-10 23:35:13 +01:00
Björn Höfling ec11dcfe69
gnu: java-forester-1.005: Update source URI.
* gnu/packages/bioinformatics.scm (java-forester-1.005)[source]: Update URI.
[native-inputs]: Wrap long line.
2020-03-10 23:35:13 +01:00
Björn Höfling 9f5eeb879f
gnu: java-jlargearrays: Update source URI.
* gnu/packages/algebra.scm (java-jlargearrays)[source]: Update URI.
2020-03-10 23:35:12 +01:00
Björn Höfling 4c87770442
gnu: java-jtransforms: Update source URI.
* gnu/packages/algebra.scm (java-jtransforms)[source]: Update URI.
2020-03-10 23:35:12 +01:00
Tobias Geerinckx-Rice f613a338d0
gnu: hplip: Update to 3.20.3.
* gnu/packages/cups.scm (hplip): Update to 3.20.3.
2020-03-10 22:23:12 +01:00
Tobias Geerinckx-Rice 8e486e808c
gnu: ruby-minitest-rg: Use HTTPS home page.
* gnu/packages/ruby.scm (ruby-minitest-rg)[home-page]: Use HTTPS.
2020-03-10 22:23:12 +01:00
Tobias Geerinckx-Rice 2bc8143f6c
gnu: python-wxpython: Use HTTPS home page.
* gnu/packages/wxwidgets.scm (python-wxpython)[home-page]: Use HTTPS.
2020-03-10 22:23:12 +01:00
Tobias Geerinckx-Rice 1e4ae5511a
gnu: java-asm: Use HTTPS home page.
* gnu/packages/java.scm (java-asm)[home-page]: Use HTTPS.
2020-03-10 22:23:11 +01:00
Tobias Geerinckx-Rice a8a8a3df30
gnu: bash-tap: Use HTTPS home page.
* gnu/packages/bash.scm (bash-tap)[home-page]: Use HTTPS.
2020-03-10 22:23:11 +01:00
Tobias Geerinckx-Rice e4c60dcfb2
gnu: tlp: Use HTTPS home page.
* gnu/packages/linux.scm (tlp)[home-page]: Use HTTPS.
2020-03-10 22:23:11 +01:00
Tobias Geerinckx-Rice 6048241f10
gnu: hplip: Update source hash.
The tarball was modified in-place.
See <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=40017>.

* gnu/packages/cups.scm (hplip)[source]: Update tarball hash.

Reported-by: Mark H Weaver <mhw@netris.org>
2020-03-10 22:02:19 +01:00
Tobias Geerinckx-Rice f9a69e9bae
gnu: openmpi: Use HTTPS home page.
* gnu/packages/mpi.scm (openmpi)[home-page]: Use HTTPS.
2020-03-10 22:02:19 +01:00
Tobias Geerinckx-Rice 9dd7082c48
gnu: openmpi: Update to 4.0.3.
* gnu/packages/mpi.scm (openmpi): Update to 4.0.3.
2020-03-10 22:02:19 +01:00
Nicolas Goaziou c3945380d9
gnu: asymptote: Update to 2.64.
* gnu/packages/plotutils.scm (asymptote): Update to 2.64.
2020-03-10 22:01:00 +01:00
Marius Bakke 2d421c4f19
Merge branch 'master' into staging 2020-03-10 20:45:24 +01:00
Carl Dong 90799c35bd
gnu: bitcoin-core: Update to 0.19.1.
* gnu/packages/finance.scm (bitcoin-core): Update to 0.19.1.

Co-Authored-By: fanquake <fanquake@gmail.com>
2020-03-10 15:27:53 -04:00
Marius Bakke 944e3502b1
gnu: mercurial: Enable more tests.
* gnu/packages/version-control.scm (mercurial)[arguments]: Add phase
'patch-tests'.  Do not remove patched tests in the 'check' phase.
2020-03-10 20:26:17 +01:00
Ludovic Courtès 79093034b9
gnu: guix: Update to 0984481.
* gnu/packages/package-management.scm (guix): Update to 0984481.
2020-03-10 19:48:24 +01:00
Mark H Weaver c90c0bd538
gnu: icecat: Update to 68.6.0-guix0-preview1 [security fixes].
Includes fixes for CVE-2019-20503, CVE-2020-6805, CVE-2020-6806,
CVE-2020-6807, CVE-2020-6811, CVE-2020-6812, and CVE-2020-6814.

* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
* gnu/packages/patches/icecat-makeicecat.patch: Adapt to new version.
2020-03-10 13:45:43 -04:00
Ludovic Courtès 09844816c7
vm: Compute UUIDs truly deterministically.
This is a followup to 1540075c79.
The mistake had no effect on prior Guile versions but it's visible since
Guile 3.0.1 and the fix for <https://bugs.gnu.org/39634>.

* gnu/system/vm.scm (operating-system-uuid): Hash a list of
'file-system-digest' values, not the 'file-system-type' procedure.
2020-03-10 18:16:39 +01:00
Ludovic Courtès 98619142b8
gnu: guile-next: Update to 3.0.1 with bug-fix for crash.
* gnu/packages/guile.scm (guile-3.0): Update to 3.0.1 with
"guile-3.0-crash.patch".
* gnu/packages/patches/guile-3.0-crash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Use it.
2020-03-10 18:16:39 +01:00
Nicolas Goaziou 0e20e2c387
gnu: emacs-xr: Update to 1.18.
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.18.
2020-03-10 16:20:02 +01:00
Ricardo Wurmus 49a221151c
gnu: Add r-ppcor.
* gnu/packages/cran.scm (r-ppcor): New variable.
2020-03-10 15:15:02 +01:00
Guillaume Le Vaillant 06c8638830
gnu: monero-gui: Update to 0.15.0.4.
* gnu/packages/finance.scm (monero-gui): Update to 0.15.0.4.
2020-03-10 13:55:20 +01:00
Guillaume Le Vaillant fc3aa11385
gnu: monero: Update to 0.15.0.5.
* gnu/packages/finance.scm (monero): Update to 0.15.0.5.
2020-03-10 13:55:20 +01:00
Tobias Geerinckx-Rice 75c33c888a
gnu: mars: Fix home page.
* gnu/packages/games.scm (mars)[home-page]: Use working domain & HTTPS.
2020-03-10 12:06:51 +01:00
Tobias Geerinckx-Rice 76fcbb7887
gnu: ode: Use HTTPS home page.
* gnu/packages/game-development.scm (ode)[home-page]: Use HTTPS.
2020-03-10 12:06:51 +01:00
Tobias Geerinckx-Rice 680e803d66
gnu: xmobar: Use HTTPS home page.
* gnu/packages/wm.scm (xmobar)[home-page]: Use HTTPS.
2020-03-10 12:06:51 +01:00
Tobias Geerinckx-Rice fdfe65b74c
gnu: gitolite: Use HTTPS home page.
* gnu/packages/version-control.scm (gitolite)[home-page]: Use HTTPS.
2020-03-10 12:06:50 +01:00
Tobias Geerinckx-Rice e48ae0bcf9
gnu: font-dosis: Use archive.org'd URIs.
* gnu/packages/fonts.scm (font-dosis)[source, home-page]: Use snapshots.
2020-03-10 12:06:50 +01:00
Tobias Geerinckx-Rice 828996bb8a
gnu: python-virtualenv: Propagate inputs.
* gnu/packages/python-xyz.scm (python-virtualenv)[inputs]: Make…
[propagated-inputs]: …this.
2020-03-10 12:06:50 +01:00
Kyle Meyer 80b2825d95
gnu: git-annex: Update to 8.20200309.
* gnu/packages/haskell-apps.scm (git-annex): Update to 8.20200309.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-03-10 10:56:45 +02:00
Michael Rohleder ba726ebc2d
gnu: mumble: Disable statistic gathering by default.
Fixes <https://bugs.gnu.org/25201>

* gnu/packages/telephone.scm (mumble)[arguments]: Add phase to disable
statistic gathering by default.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-03-10 10:54:48 +02:00
Tobias Geerinckx-Rice 43d4eb8fc4
gnu: r-sparselda: Use HTTPS home page.
* gnu/packages/cran.scm (r-sparselda)[home-page]: Use HTTPS.
2020-03-10 00:12:10 +01:00
Tobias Geerinckx-Rice 369e4e9660
gnu: r-spams: Use HTTPS home page.
Well, it currently redirects back to HTTP…

* gnu/packages/statistics.scm (r-spams)[home-page]: Use ‘HTTPS’.
2020-03-10 00:12:10 +01:00
Tobias Geerinckx-Rice 57a2a5015b
gnu: r-fda: Use HTTPS home page.
* gnu/packages/cran.scm (r-fda)[home-page]: Use HTTPS.
2020-03-10 00:12:09 +01:00
Tobias Geerinckx-Rice b0c62de87f
gnu: r-mcmc: Use HTTPS home page.
* gnu/packages/cran.scm (r-mcmc)[home-page]: Use HTTPS.
2020-03-10 00:12:08 +01:00
Tobias Geerinckx-Rice b32a3e1dbf
gnu: r-varselrf: Update home page.
* gnu/packages/cran.scm (r-varselrf)[home-page]: Follow (HTTPS)
redirection.
2020-03-10 00:12:08 +01:00
Tobias Geerinckx-Rice 3a18b1cc2e
gnu: r-knitr: Update home page.
* gnu/packages/statistics.scm (r-knitr)[home-page]: Follow (HTTPS)
redirection.
2020-03-10 00:12:07 +01:00
Tobias Geerinckx-Rice b1d3e63bc2
gnu: r-ouch: Use HTTPS home page.
* gnu/packages/cran.scm (r-ouch)[home-page]: Use HTTPS.
2020-03-10 00:12:07 +01:00
Tobias Geerinckx-Rice 56451c7894
gnu: libinput: Note libinput-minimal inheritance.
* gnu/packages/freedesktop.scm (libinput): Add a warning comment.
2020-03-10 00:12:06 +01:00
Tobias Geerinckx-Rice ef617dedd2
gnu: csvkit: Update to 1.0.5.
* gnu/packages/wireservice.scm (csvkit): Update to 1.0.5.
[source]: Remove upstreamed patch.
* gnu/packages/patches/csvkit-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-03-09 23:55:42 +01:00
Tobias Geerinckx-Rice 77dbc1c537
gnu: slang: Use HTTPS home page.
* gnu/packages/slang.scm (slang)[home-page]: Use HTTPS.
2020-03-09 23:55:42 +01:00
Tobias Geerinckx-Rice 59e884a211
gnu: polipo: Use HTTPS home page.
* gnu/packages/web.scm (polipo)[home-page]: Use HTTPS.
2020-03-09 23:55:42 +01:00
Tobias Geerinckx-Rice 1bcf4ba44b
gnu: iperf: Use HTTPS home page.
* gnu/packages/networking.scm (iperf)[home-page]: Use HTTPS.
2020-03-09 23:55:42 +01:00
Tobias Geerinckx-Rice 91fa58c739
gnu: xdotool: Use HTTPS home page.
* gnu/packages/xdisorg.scm (xdotool)[home-page]: Use HTTPS.
2020-03-09 23:55:41 +01:00
Tobias Geerinckx-Rice 0622403d35
gnu: compface: Update home page.
* gnu/packages/mail.scm (compface)[home-page]: Follow (HTTPS)
redirection.
2020-03-09 23:55:41 +01:00
Tobias Geerinckx-Rice f30444b9da
gnu: compface: Don't use NAME in source URI.
* gnu/packages/mail.scm (compface)[source]: Hard-code NAME.
2020-03-09 23:55:41 +01:00
Tobias Geerinckx-Rice 88c6a1812c
gnu: Use HTTPS for rstudio.github.io home pages.
* gnu/packages/cran.scm (r-shinydashboard, r-shinythemes, r-dt)
[home-page]: Use HTTPS.
2020-03-09 23:55:41 +01:00
Ludovic Courtès 827abd5deb
tests: getmail: Provide a pre-initialized user account password.
* gnu/tests/mail.scm (%getmail-os): Rewrite so that the "alice" account
has a password.
(run-getmail-test)[test]("set password for alice"): Remove.  This would
not work since commit 8b9cad01e9 since
'passwd' would no longer be in $PATH.
2020-03-09 23:46:36 +01:00
Ludovic Courtès 0e42a1643e
tests: docker-system: Increase memory requirement.
The system image would no longer fit in memory, starting from commit
8c7eb58453.

* gnu/tests/docker.scm (run-docker-system-test): Set 'memory-size' to 3500.
2020-03-09 23:46:36 +01:00
Ludovic Courtès 7e5f016cdb
tests: zabbix: Set 'PATH' before running the scripts.
This is a followup to 8b9cad01e9.

* gnu/tests/monitoring.scm (run-zabbix-server-test)[test]: Set 'PATH' in
MARIONETTE.
2020-03-09 23:46:36 +01:00
Ludovic Courtès 8a49e63b2d
gnu: Add rr.
* gnu/packages/debug.scm (rr): New variable.
2020-03-09 23:46:36 +01:00
Marius Bakke b3b5714fa7
Merge branch 'master' into staging 2020-03-09 21:45:32 +01:00
Tobias Geerinckx-Rice 51f30d4fdf
Revert "gnu: libinput: Update to 1.15.3."
This reverts commit 1fad0b8674.
It rebuilds the world through libinput-minimal.
2020-03-09 21:26:58 +01:00
Tobias Geerinckx-Rice 18d59640e1
gnu: python-sphinxcontrib-websupport: Update to 1.2.0.
* gnu/packages/sphinx.scm (python-sphinxcontrib-websupport): Update to
1.2.0.
2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice 11be15730c
gnu: python-sphinxcontrib-serializinghtml: Update to 1.1.4.
* gnu/packages/sphinx.scm (python-sphinxcontrib-serializinghtml): Update
to 1.1.4.
2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice 99533bebac
gnu: python-sphinxcontrib-qthelp: Update to 1.0.3.
* gnu/packages/sphinx.scm (python-sphinxcontrib-qthelp): Update to 1.0.3.
2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice 25b576a9db
gnu: python-sphinxcontrib-htmlhelp: Update to 1.0.3.
* gnu/packages/sphinx.scm (python-sphinxcontrib-htmlhelp): Update to 1.0.3.
2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice ccac5118f7
gnu: python-sphinxcontrib-devhelp: Update to 1.0.2.
* gnu/packages/sphinx.scm (python-sphinxcontrib-devhelp): Update to 1.0.2.
2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice f49b8c14fb
gnu: python-sphinxcontrib-applehelp: Update to 1.0.2.
* gnu/packages/sphinx.scm (python-sphinxcontrib-applehelp): Update to 1.0.2.
2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice a0093a71c5
gnu: youtube-dl: Update to 2020.03.08.
* gnu/packages/video.scm (youtube-dl): Update to 2020.03.08.
2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice 9d7a3562c2
gnu: perl-catalyst-devel: Update to 1.40.
* gnu/packages/web.scm (perl-catalyst-devel): Update to 1.40.
2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice 99e8ce528c
gnu: spice-protocol: Update to 0.14.1.
* gnu/packages/spice.scm (spice-protocol): Update to 0.14.1.
2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice e4e44f24bd
gnu: perl-timedate: Update to 2.32.
* gnu/packages/perl.scm (perl-timedate): Update to 2.32.
2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice 0e591daa81
gnu: perl-xs-object-magic: Update to 0.05.
* gnu/packages/perl.scm (perl-xs-object-magic): Update to 0.05.
2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice 2317f330e8
gnu: perl-datetime-format-strptime: Update to 1.77.
* gnu/packages/perl.scm (perl-datetime-format-strptime): Update to 1.77.
2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice 940f9c75a6
gnu: perl-datetime: Update to 1.52.
* gnu/packages/perl.scm (perl-datetime): Update to 1.52.
2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice 3a83862db0
gnu: man-db: Update to 2.9.1.
* gnu/packages/man.scm (man-db): Update to 2.9.1.
2020-03-09 16:01:19 +01:00
Tobias Geerinckx-Rice c3bde0b7af
gnu: libseccomp: Update to 2.4.3.
* gnu/packages/linux.scm (libseccomp): Update to 2.4.3.
[source]: Remove upstreamed patch.
* gnu/packages/patches/libseccomp-open-aarch64.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice 1fad0b8674
gnu: libinput: Update to 1.15.3.
* gnu/packages/freedesktop.scm (libinput): Update to 1.15.3.
2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice 4227a73189
gnu: libostree: Update to 2020.2.
* gnu/packages/package-management.scm (libostree): Update to 2020.2.
2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice cf566106b6
gnu: tcsh: Use HTTPS home page.
* gnu/packages/shells.scm (tcsh)[home-page]: Use HTTPS.
2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice a0087cf58d
gnu: mit-krb5: Use HTTPS home page.
* gnu/packages/kerberos.scm (mit-krb5)[home-page]: Use HTTPS.
2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice 80fafdba1c
gnu: speedcrunch: Use HTTPS home page.
* gnu/packages/maths.scm (speedcrunch)[home-page]: Use HTTPS.
2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice ef752646aa
gnu: ding: Use HTTPS home page.
* gnu/packages/dictionaries.scm (ding)[home-page]: Use HTTPS.
2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice b3851745f1
gnu: plotutils: Use HTTPS home page.
* gnu/packages/plotutils.scm (plotutils)[home-page]: Use HTTPS.
2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice 17dea2e279
gnu: idris: Use HTTPS home page.
* gnu/packages/idris.scm (idris)[home-page]: Use HTTPS.
2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice 8a34536f00
gnu: xfce4-power-manager: Update to 1.7.0.
* gnu/packages/xfce.scm (xfce4-power-manager): Update to 1.7.0.
2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice 0babcd9d83
gnu: xfce4-power-manager: Don't use NAME in source URI.
* gnu/packages/xfce.scm (xfce4-power-manager)[source]: Hard-code NAME.
2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice d4e8859ba5
gnu: xfburn: Update to 0.6.2.
* gnu/packages/xfce.scm (xfburn): Update to 0.6.2.
2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice 7ae397ac14
gnu: claws-mail: Update to 3.17.5.
* gnu/packages/mail.scm (claws-mail): Update to 3.17.5.
2020-03-09 16:01:18 +01:00
Tobias Geerinckx-Rice 633c32fbd9
gnu: s6: Update to 2.9.0.1.
* gnu/packages/skarnet.scm (s6): Update to 2.9.0.1.
2020-03-09 16:01:17 +01:00
Tobias Geerinckx-Rice bead506555
gnu: s6-linux-init: Update to 1.0.4.0.
* gnu/packages/skarnet.scm (s6-linux-init): Update to 1.0.4.0.
2020-03-09 16:01:17 +01:00
Guillaume Le Vaillant 0ccc138517
gnu: Add spatialite-tools.
* gnu/packages/geo.scm (spatialite-tools): New variable.
2020-03-09 15:21:46 +01:00
Guillaume Le Vaillant 133de9ab38
gnu: Add readosm.
* gnu/packages/geo.scm (readosm): New variable.
2020-03-09 15:21:46 +01:00
Guillaume Le Vaillant e8906d86ee
gnu: spatialite-gui: Add missing input.
* gnu/packages/geo.scm (spatialite-gui)[inputs]: Add libjpeg-turbo.
2020-03-09 15:21:46 +01:00
Guillaume Le Vaillant 3cf0a5dc53
gnu: gdal: Update to 3.0.4.
* gnu/packages/geo.scm (gdal): Update to 3.0.4.
2020-03-09 15:21:46 +01:00
Guillaume Le Vaillant 9147d1216e
gnu: proj: Update to 6.3.1.
* gnu/packages/geo.scm (proj): Update to 6.3.1.
2020-03-09 15:21:45 +01:00
Roel Janssen 4960c03d1d
gnu: Add perl-math-vecstat.
* gnu/packages/perl.scm (perl-math-vecstat): New variable.
2020-03-09 15:18:13 +01:00
Roel Janssen b4e1ca0675
gnu: python-semver: Fix build.
* gnu/packages/python-xyz.scm: Add python-appdirs, python-distlib,
  python-importlib-metadata, python-filelock, and python-six to native-inputs
  in order to run the test suite.
2020-03-09 14:50:35 +01:00
Roel Janssen c0f6446579
gnu: Fix build of python-velocyto.
* gnu/packages/bioinformatics.scm (python-velocyto): Add python-joblib to
  native-inputs to make the test suite run succesfully.
2020-03-09 14:34:41 +01:00
Efraim Flashner fb29d7d70c
gnu: Add vim-asyncrun.
* gnu/packages/vim.scm (vim-asyncrun): New variable.
2020-03-09 14:45:38 +02:00
Efraim Flashner 61daf2dbc9
gnu: Add nyancat.
* gnu/packages/toys.scm (nyancat): New variable.
2020-03-09 14:31:25 +02:00
Roel Janssen b6574660e3
gnu: Update python-statsmodels to 0.11.1.
* gnu/packages/statistics.scm (python-statsmodels): Update to 0.11.1.
2020-03-09 13:01:27 +01:00
Pierre Neidhardt 6dfc981a98
gnu: Add sycamore.
* gnu/packages/lisp-xyz.scm (cl-sycamore, sbcl-sycamore): New variables.
2020-03-09 10:55:46 +01:00
Pierre Neidhardt 698a34482a
gnu: emacs-sly: Update to 20200228.
* gnu/packages/emacs-xyz.scm (emacs-sly): Update to 20200228.
2020-03-09 09:42:04 +01:00
Ricardo Wurmus c3b6d61df3
gnu: r-desolve: Update to 1.28.
* gnu/packages/cran.scm (r-desolve): Update to 1.28.
2020-03-09 08:51:40 +01:00
Ricardo Wurmus 103de43c67
gnu: r-umap: Update to 0.2.5.0.
* gnu/packages/cran.scm (r-umap): Update to 0.2.5.0.
[native-inputs]: Add r-knitr.
2020-03-09 08:51:40 +01:00
Ricardo Wurmus ea20989d87
gnu: r-rcppannoy: Update to 0.0.16.
* gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.16.
[native-inputs]: Remove r-knitr.
2020-03-09 08:51:40 +01:00
Ricardo Wurmus 207ba868a3
gnu: r-quantmod: Update to 0.4-16.
* gnu/packages/cran.scm (r-quantmod): Update to 0.4-16.
2020-03-09 08:51:40 +01:00
Ricardo Wurmus bcbcd17d45
gnu: r-vcd: Update to 1.4-6.
* gnu/packages/cran.scm (r-vcd): Update to 1.4-6.
2020-03-09 08:51:40 +01:00
Ricardo Wurmus fec7f576b4
gnu: r-ggrepel: Update to 0.8.2.
* gnu/packages/cran.scm (r-ggrepel): Update to 0.8.2.
2020-03-09 08:51:36 +01:00
Christopher Baines af96c1e0e4
services: cuirass: Allow passing extra command line options.
This is so that the options supported by the service configuration don't have
to always be changed. Generally though all options should be explicitly
supported and documented, so this is mostly to facilitate experimentation.

* gnu/services/cuirass.scm (<cuirass-configuration>): Add an extra-options
field.
(cuirass-shepherd-service): Pass the extra options to the shepherd servvices.
* doc/guix.texi (Continuous Integration): Document it.
2020-03-08 23:46:11 +00:00
Christopher Baines d8ab68b929
services: guix-data-service: Allow passing extra options.
This is so that the options supported by the service configuration don't have
to always be changed. Generally though all options should be explicitly
supported and documented, so this is mostly to facilitate experimentation.

* gnu/services/guix.scm (<guix-data-service-configuration>): Add extra-options
and extra-process-jobs-options to the record type.
(guix-data-service-shepherd-services): Handle these new configuration record
fields.
* doc/guix.texi (Guix Data Service): Document these new options.
2020-03-08 23:35:03 +00:00
Christopher Baines 67d21e2b08
gnu: guix-data-service: Update to 0.0.1-18.18eb9df.
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-18.18eb9df.
(inputs, native-inputs): Switch to using the Guile 3 package variants where
applicable.
2020-03-08 23:35:00 +00:00
Jakub Kądziołka 94d57ba339
gnu: python-virtualenv: Update to 20.0.8.
* gnu/packages/python-xyz.scm (python-virtualenv): Update to 20.0.8.
  [arguments]: Remove the now-redundant 'disable-failing-test phase.
  [native-inputs]: Add python-setuptools and python-setuptools-scm.
  [inputs]: Add python-{appdirs, distlib, filelock, six,
  importlib-metadata}.
2020-03-09 00:20:49 +01:00
Jakub Kądziołka 6e79208954
gnu: python-xyz: Add python-filelock.
* gnu/packages/python-xyz.scm (python-filelock): New variable.
2020-03-09 00:20:47 +01:00
Jakub Kądziołka f2a6483084
gnu: python-xyz: Add python-distlib.
* gnu/packages/python-xyz.scm (python-distlib): New variable.
2020-03-09 00:20:46 +01:00
Ricardo Wurmus 830eac9c27
gnu: ngless: Update to 1.1.0.
* gnu/packages/bioinformatics.scm (ngless): Update to 1.1.0.
2020-03-08 23:37:09 +01:00
Ricardo Wurmus 3f68f76eaf
gnu: Add jack-select.
* gnu/packages/music.scm (jack-select): New variable.
2020-03-08 23:13:11 +01:00
Ricardo Wurmus 46a864e7c1
gnu: taxtastic: Update to 0.8.11.
* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.8.11.
[source]: Fetch from Github.
[arguments]: Build with default Python; add phases 'prepare-directory,
'python37-compatibility, and update 'check phase.
[propagated-inputs]: Replace Python 2 variants with Python 3 variants.
2020-03-08 22:50:16 +01:00
Ludovic Courtès d6d0e10b3d
gnu: guile-next: Revert to 3.0.0.
Guile 3.0.1 segfaults while building guix-system-tests.drv on
and "guile3.0-guix" on x86_64-linux.

* gnu/packages/guile.scm (guile-next): Revert to 3.0.0.
(guile-3.0):
2020-03-08 22:15:54 +01:00
Roel Janssen 3d33ca27b2
gnu: Add perl-config-inifiles.
* gnu/packages/perl.scm (perl-config-inifiles): New variable.
2020-03-08 21:50:44 +01:00
Roel Janssen d0ca79e53d
gnu: Add perl-attribute-util.
* gnu/packages/perl.scm (perl-attribute-util): New variable.
2020-03-08 21:50:32 +01:00
Efraim Flashner 30acf2f959
gnu: Add font-opendyslexic.
* gnu/packages/fonts.scm (font-opendyslexic): New variable.
(font-open-dyslexic): Mark as deprecated package.
2020-03-08 22:42:33 +02:00
Ludovic Courtès e5059c95aa
gnu: beep: Remove dependency on GCC 8.
* gnu/packages/terminals.scm (beep)[native-inputs]: Remove.
2020-03-08 21:21:57 +01:00
Vincent Legoll 1d91680c84
gnu: beep: Update to 1.4.9.
* gnu/packages/terminals.scm (beep): Update to 1.4.9.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-08 21:21:57 +01:00
Jack Hill f6713b55a1
services: certbot: Add server option.
* gnu/services/certbot.scm (certbot-configuration): Add server option.
(certbot-command): Use server option.
(certbot-actication): Use server option.
(certbot-nginx-server-configurations): Use server option.
* doc/guix.texi (Certificate Services): Document server option.

Co-authored-by: Tobias Geerinckx-Rice <me@tobias.gr>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-08 21:21:57 +01:00
Brice Waegeneire 9ef37e81d6
system: Export 'operating-system' missing fields.
* gnu/system.scm: Export 'operating-system-firmware',
'operating-system-keyboard-layout',
'operating-system-name-service-switch', 'operating-system-pam-services',
'operating-system-setuid-programs', 'operating-system-skeletons',
'operating-system-sudoers-file', 'operating-system-swap-devices'.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-08 21:21:57 +01:00
Ludovic Courtès 1a30351bf3
gnu: guile-next: Update to 3.0.1.
* gnu/packages/guile.scm (guile-3.0): Update to 3.0.1.  Use "mirror://" URL.
2020-03-08 21:21:57 +01:00
Ricardo Wurmus c32897b6e4
gnu: r-robust: Update to 0.5-0.0.
* gnu/packages/statistics.scm (r-robust): Update to 0.5-0.0.
2020-03-08 16:02:04 +01:00
Ricardo Wurmus 7b2acf1508
gnu: r-rapidjsonr: Update to 1.2.0.
* gnu/packages/cran.scm (r-rapidjsonr): Update to 1.2.0.
2020-03-08 16:02:04 +01:00
Ricardo Wurmus dc30cc0300
gnu: r-atacseqqc: Update to 1.10.3.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.3.
[native-inputs]: Add r-knitr.
2020-03-08 16:02:04 +01:00
Hartmut Goebel 6434f9b634
gnu: Reword and extend descriptions for some KDE packages.
* gnu/packages/kde-multimedia.scm (libkcompatdisc)[description]: Extend.
* gnu/packages/kde-pim.scm (akonadi-search, kalarmcal, kdemailimporter,
  kdepim-apps-libs, kidentitymanagement, kldap, kmailtransport, kmbox, kmime,
  kontactinterface, kpimtextedit)[description]: Reword and extend.
  (ktnef, kpimcommon, libkdepim)[synopsis, description]: Reword and extend.
  (kmailtransport)[synopsis]: Fix space.
* gnu/packages/kde-systemtools.scm (khelpcenter)[description]: Extend.
2020-03-08 14:06:00 +01:00
Martin Becze 1eb3b2b666
gnu: Add emacs-org-journal.
* gnu/packages/emacs-xyz.scm (emacs-org-journal): New Variable.
2020-03-08 11:19:16 +01:00
Roel Janssen e2ca10a46f
gnu: python-umap-learn: Fix build.
* gnu/packages/machine-learning.scm (python-umap-learn): Add python-joblib to
  run the test suite.
2020-03-08 10:20:22 +01:00
Maxim Cournoyer 5fdc5b2d57
services: nfs: Run rpc.mountd in foreground.
Fixes <https://bugs.gnu.org/39708>.

Shepherd doesn't keep track of processes that fork themselves and would
disable the process after restarting it a couple times.

* gnu/services/nfs.scm (nfs-shepherd-services): Invoke rpc.mountd with the
'--foreground' option.
2020-03-08 00:26:02 -05:00
Leo Famulari be3908fa14
gnu: QEMU: Fix CVE-2020-8608.
* gnu/packages/patches/qemu-CVE-2020-8608.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (qemu)[source]: Use it.
2020-03-07 16:37:25 -05:00
Lars-Dominik Braun 83ac7cb42b
gnu: brotli: Remove package
Same package is provided by google-brotli.

* gnu/packages/compression.scm (brotli): Redefine as a deprecated alias
for "google-brotli".

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2020-03-07 22:30:06 +01:00