6834f24096
gnu: r-dmrseq: Update to 1.18.1.
...
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.18.1.
2023-04-19 20:12:28 -04:00
f26cf1895b
gnu: r-beachmat: Update to 2.14.2.
...
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.14.2.
2023-04-19 20:12:28 -04:00
cb85ea56a2
gnu: r-gdsfmt: Update to 1.34.1.
...
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.34.1.
2023-04-19 20:12:28 -04:00
5ccd264893
gnu: r-ebimage: Update to 4.40.1.
...
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.40.1.
2023-04-19 20:12:27 -04:00
d2485dde5b
gnu: r-enrichplot: Update to 1.18.4.
...
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.18.4.
2023-04-19 20:12:27 -04:00
6d10745d6b
gnu: r-structuralvariantannotation: Update to 1.14.1.
...
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.14.1.
2023-04-19 20:12:27 -04:00
ec37e00e90
gnu: r-rhdf5: Update to 2.42.1.
...
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.42.1.
2023-04-19 20:12:27 -04:00
610979ed3a
gnu: openmw-scenegraph: Fix build.
...
* gnu/packages/graphics.scm (openmw-scenegraph)[outputs]: Only use 'out'
output.
[arguments]: Delete inherited 'copy-plugins phase.
2023-04-19 20:12:27 -04:00
5832699aea
gnu: repo2docker: Add missing inputs.
...
* gnu/packages/jupyter.scm (repo2docker)[inputs]: Add python-iso8601,
python-chardet.
2023-04-19 20:12:26 -04:00
61ad934d90
gnu: kwin: Update skipped test list.
...
* gnu/packages/kde-plasma.scm (kwin)[arguments]: Update custom 'check
phase with new list of skipped tests.
2023-04-19 20:12:26 -04:00
83cef4a4f1
gnu: kwin: Rewrite skipped tests to be more readable.
...
* gnu/packages/kde-plasma.scm (kwin)[arguments]: Rewrite skipped tests
in custom 'check phase to be easier to read.
2023-04-19 20:12:26 -04:00
9cc7ff179d
gnu: emacs-osm: Do not mix home-page and origin.
...
* gnu/packages/emacs-xyz.scm (emacs-osm)[source]<origin>: Do not use home-page
value as origin.
2023-04-19 20:12:26 -04:00
ae1f9b9c92
gnu: emacs-osm: Update to 0.11.
...
* gnu/packages/emacs-xyz.scm (emacs-osm): Update to 0.11.
2023-04-19 20:12:26 -04:00
d02b17534a
gnu: emacs-marginalia: Update to 1.2.
...
* gnu/packages/emacs-xyz.scm (emacs-marginalia): Update to 1.2.
2023-04-19 20:12:25 -04:00
2f1b156d04
gnu: emacs-envrc: Add DIRENV as an input.
...
* gnu/packages/emacs-xyz.scm (emacs-envrc)[arguments]<#:phases>: Set direnv
executable location.
<#:tests?, #:test-command>: Tentatively run tests, without success. At least,
they do not complain "direnv" executable is nowhere to be found.
[inputs]: Add DIRENV.
2023-04-19 20:12:25 -04:00
e870caa018
gnu: emacs-envrc: Update to 0.5.
...
* gnu/packages/emacs-xyz.scm (emacs-envrc): Update to 0.5.
2023-04-19 20:12:25 -04:00
6dc90a7a6f
gnu: emacs-cape: Update to 0.15.
...
* gnu/packages/emacs-xyz.scm (emacs-cape): Update to 0.15.
2023-04-19 20:12:24 -04:00
3c0a466170
gnu: emacs-autothemer: Run tests.
...
* gnu/packages/emacs-xyz.scm (emacs-autothemer)[arguments]: Run tests.
2023-04-19 20:12:24 -04:00
38b2122afb
gnu: emacs-autothemer: Update to 0.2.17.
...
* gnu/packages/emacs-xyz.scm (emacs-autothemer): Update to 0.2.17.
2023-04-19 20:12:24 -04:00
79d5721a03
gnu: Add texlive-totpages.
...
* gnu/packages/tex.scm (texlive-totpages): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-19 20:12:23 -04:00
919a08b3d5
gnu: texlive-latex-lastpage: Replace with texlive-lastpage.
...
* gnu/packages/tex.scm (texlive-lastpage): New variable.
(texlive-latex-lastpage): Deprecate variable.
2023-04-19 20:12:23 -04:00
f6fa6772e9
gnu: texlive-latex-totcount: Replace with texlive-totcount.
...
* gnu/packages/tex.scm (texlive-totcount): New variable.
(texlive-latex-totcount): Deprecate package.
2023-04-19 20:12:23 -04:00
7644e4c090
gnu: texlive-latex-acronym: Replace with texlive-acronym.
...
* gnu/packages/tex.scm (texlive-latex-acronym): Deprecate package.
(texlive-acronym): New variable.
2023-04-19 20:12:23 -04:00
e59ce41bf2
gnu: texlive-latex-bigfoot: Replace with texlive-bigfoot.
...
* gnu/packages/tex.scm (texlive-bigfoot): New variable.
(texlive-latex-bigfoot): Deprecate package.
(texlive-pstool): Use new variable.
2023-04-19 20:12:22 -04:00
0c7e7e42e6
gnu: Add texlive-relsize.
...
* gnu/packages/tex.scm (texlive-relsize): New variable.
2023-04-19 20:12:22 -04:00
0c50d0bda1
gnu: Add texlive-ncctools.
...
* gnu/packages/tex.scm (texlive-ncctools): New variable.
2023-04-19 20:12:22 -04:00
8ed911cb25
gnu: r-with-tests: Update to 4.2.3.
...
* gnu/packages/statistics.scm (r-with-tests): Update to 4.2.3.
2023-04-19 20:12:22 -04:00
7cb21556b6
snippets: tempel: Simplify git-commit-mode detection.
...
* etc/snippets/tempel/text-mode: Simplify git-commit-mode detection.
Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-04-19 20:12:22 -04:00
e7550b8d93
gnu: emacs-next: Update to 29.0.90.
...
* gnu/packages/emacs.scm (emacs-next): Update to 29.0.90.
2023-04-19 20:12:21 -04:00
e8e62d8bf2
gnu: qemu: Update to 7.2.1.
...
* gnu/packages/virtualization.scm (qemu): Update to 7.2.1.
2023-04-19 20:12:21 -04:00
c4c048032b
gnu: audacity: Update to 3.3.0-beta-1.
...
* gnu/packages/audio.scm (audacity): Update to 3.3.0-beta-1.
[source]: Delete trailing #t in snippet.
[arguments]: Update fix-cmake-rpath phase.
Reported-by: tschilptschilp23 on #guix.
2023-04-19 20:12:21 -04:00
a7dd463baa
gnu: remmina: Update to 1.4.29.
...
* gnu/packages/vnc.scm (remmina): Update to 1.4.29.
[inputs]: Add PYTHON-MINIMAL-WRAPPER.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2023-04-19 20:12:21 -04:00
05b22726ea
gnu: usbutils: Use G-Expressions.
...
* gnu/packages/linux.scm (usbutils): Use G-Expressions.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-19 20:12:21 -04:00
d89e642e84
gnu: usbutils: Make package description different from synopsis.
...
* gnu/packages/linux.scm (usbutils)[description]: Change package description.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-19 20:12:20 -04:00
88a59bb929
gnu: Add kitsas.
...
* gnu/packages/finance.scm (kitsas): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2023-04-19 20:12:20 -04:00
6d6add5f8f
ssh: Silence remote daemon messages when sending store items.
...
Fixes <https://issues.guix.gnu.org/61839 >.
Previously, when running 'guix-daemon --debug' on the remote machine,
lots of debugging outputs would be printed to stderr; since the client
wouldn't read it, we could eventually reach a deadlock where the 'guix
repl' process would be stuck writing to stderr while the client is
stuck waiting on its stdout.
* guix/ssh.scm (store-import-channel)[import]: Parameterize
'current-build-output-port'.
2023-04-19 20:12:20 -04:00
e95e65541a
substitute: Download nar from another server upon ETIMEDOUT.
...
Previously, 'guix substitute' would fail abruptly with something like:
guix substitute: warning: while fetching https://ci.guix.gnu.org/nar/lzip/…-example : server is somewhat slow
guix substitute: warning: try `--no-substitutes' if the problem persists
guix substitute: error: connect*: Connection timed out
substitution of /gnu/store/…-example failed
* guix/scripts/substitute.scm (network-error?): Add ETIMEDOUT.
2023-04-19 20:12:20 -04:00
2886a59d18
services: agetty: 'term-console' succeeds by default.
...
Previously, on a typical setup without "console=ttyS0" or similar in
'kernel-arguments', the 'term-console' Shepherd service would always be
marked as failing to start. This is undesirable because it raises a
false alarm: the service is expected to do nothing in this case.
This patch instead marks it as succeeding and logs a message explaining
it's doing nothing.
* gnu/services/base.scm (agetty-shepherd-service): In 'start' method,
succeed when TTY is #f and print a message.
2023-04-19 20:12:20 -04:00
abdf812acc
environment: Really auto-load (guix scripts pack).
...
Fixes a performance regression on cache hits introduced in
b31ea797edhttps://issues.guix.gnu.org/62899 >.
* guix/scripts/environment.scm: Autoload (gnu build install).
(%options): Add indirection when calling 'symlink-spec-option-parser' so
that (guix scripts pack) is auto-loaded only when needed.
2023-04-19 20:12:19 -04:00
72096b7330
gnu: Add converseen.
...
* gnu/packages/image.scm (converseen): New variable.
* gnu/packages/patches/converseen-hide-non-free-pointers.patch:
* gnu/packages/patches/converseen-hide-updates-checks.patch: New files.
* gnu/local.mk: Register files above.
2023-04-19 20:12:19 -04:00
e10e277f7a
gnu: python-anyio: Update to 3.6.2.
...
* gnu/packages/python-xyz.scm (python-anyio): Update to 3.6.2.
2023-04-19 20:12:19 -04:00
dd375f7075
gnu: font-meera-inimai: Use gexps and remove labels.
...
* gnu/packages/fonts.scm (font-meera-inimai) [native-inputs]: Remove labels.
[arguments]: Use gexps.
2023-04-19 20:12:19 -04:00
af015334d1
gnu: python-fonttools-full: Rename to python-fonttools.
...
* gnu/packages/python-xyz.scm (python-fonttools): Rename to...
(python-fonttools-minimal): ... this.
(python-fonttools-full): Adjust references to base package. Rename to...
(python-fonttools): ... this.
(python-matplotlib):
* gnu/packages/fontutils.scm (python-cu2qu) [propagated-inputs]: Rename
python-fonttools-full to python-fonttools.
(python-ufolib2, python-defcon-bootstrap): Likewise.
* gnu/packages/pdf.scm (weasyprint): Likewise.
* gnu/packages/fonts.scm (font-meera-inimai) Adjust for renamed
python-fonttools-minimal.
* gnu/packages/fontutils.scm (python-cffsubr): Likewise.
(python-compreffor, python-cu2qu, python-fontmath, python-fontpens-bootstrap)
(python-fontparts-bootstrap, python-glyphsets, python-mutatormath)
(python-ufoprocessor, graphite2, python-ufolib2)
(python-defcon-bootstrap): Likewise.
* gnu/packages/graphics.scm (python-booleanoperations): Likewise.
2023-04-19 20:12:18 -04:00
00a328847a
gnu: python-fonttools: Update to 4.39.3.
...
This should have been already merged but was left out in a conflict
resolution.
* gnu/packages/python-xyz.scm (python-fonttools): Update to 4.39.3.
2023-04-19 20:12:18 -04:00
798d91df26
gnu: python-scikit-build: Update to 0.17.1.
...
* gnu/packages/python-xyz.scm (python-scikit-build): Update to 0.17.1.
[source]: Update URI.
[arguments]: Update check phase override.
[native-inputs]: Add python-hatchling, python-hatch-fancy-pypi-readme and
python-hatch-vcs.
[propagated-inputs]: Add python-tomli.
2023-04-19 20:12:18 -04:00
53416dbe59
gnu: Add python-hatch-fancy-pypi-readme.
...
* gnu/packages/python-build.scm (python-hatch-fancy-pypi-readme): New variable.
2023-04-19 20:12:18 -04:00
2c54d3f489
gnu: gfeeds: Update to 2.2.0.
...
* gnu/packages/syndication.scm (gfeeds): Update to 2.2.0.
[phases]: Fix skip-icon-cache phase. Use search-input-file in wrap-gfeeds.
2023-04-19 20:12:18 -04:00
592c6523b7
gnu: python-pytest-trio: Update to 0.8.0.
...
* gnu/packages/python-check.scm (python-pytest-trio): Update to 0.8.0.
[arguments]: New relax-requirements phase. Delete extraneous
add-installed-pythonpath call. Disable two new tests.
2023-04-19 20:12:17 -04:00
ba9551073b
gnu: python-aiohttp: Update to 3.8.4.
...
* gnu/packages/python-web.scm (python-aiohttp): Update to 3.8.4.
[arguments]: Adjust comments in fix-tests phase. Skip/ignore more tests in
check phase. Remove extraneous or (it wouldn't have worked with invoke
anyway).
[propagated-inputs]: Add python-asynctest. Remove python-typing-extensions.
2023-04-19 20:12:17 -04:00
0a5da1d655
gnu: python-pyzmq: Disable two tests to fix build.
...
* gnu/packages/python-xyz.scm (python-pyzmq) [arguments]: Rename
disable-draft-test to disable-problematic-tests, and disable two extra tests.
2023-04-19 20:12:17 -04:00
Ricardo Wurmus
Efraim Flashner
Nicolas Goaziou
Matthieu Lemerre
Nicolas Graves
Liliana Marie Prikler
Maxim Cournoyer
TakeV
Bruno Victal
mikadoZero
Saku Laesvuori
Ludovic Courtès