fac40f38fe
gnu: r-dbi: Update to 0.8.
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* gnu/packages/statistics.scm (r-dbi): Update to 0.8.
2018-03-03 10:46:35 +01:00
081d143d3b
gnu: r-performanceanalytics: Update to 1.5.2.
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* gnu/packages/cran.scm (r-performanceanalytics): Update to 1.5.2.
[propagated-inputs]: Add r-quadprog.
[native-inputs]: Remove gfortran.
2018-03-03 10:46:35 +01:00
eac026e5c8
linux-initrd: Add virtio modules to '%base-initrd-modules'.
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Fixes a regression in installation tests, whereby 'guix system init'
would report that virtio modules are missing for the target devices.
In practice virtio modules were always available since 'base-initrd' was
always called with #:virtio? #t. This commit simply moves them to
'%base-initrd-modules' so that 'guix system' knows they're available.
Reported by Danny Milosavljevic <dannym@scratchpost.org> at
<https://debbugs.gnu.org/cgi/bugreport.cgi?bug=30629#112 >.
* gnu/system/linux-initrd.scm (default-initrd-modules): Add virtio
modules.
(base-initrd): Remove #:virtio? and 'virtio-modules'.
* gnu/system/vm.scm (expression->derivation-in-linux-vm)
(system-qemu-image, virtualized-operating-system): Remove uses of
#:virtio?.
* doc/guix.texi (Initial RAM Disk): Update 'base-initrd' doc.
2018-03-03 09:41:21 +01:00
f850e0da8e
system: beaglebone-black: Use 'initrd-modules'.
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* gnu/system/examples/beaglebone-black.tmpl: Use 'initrd-modules'
instead of 'initrd'.
2018-03-03 09:41:21 +01:00
5a3716aebf
vm: Add missing modules to the 'expression->derivation-in-linux-vm' initrd.
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Fixes a regression introduced in
bc499b113a
2018-03-03 09:41:21 +01:00
3cb3a4e6e5
linux-initrd: 'file-system-modules' returns the right module list.
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Fixes a bug whereby, for an "iso9660" file system, it would return
'("iso9660" "isofs"), i.e., both the key and the value.
Reported by Danny Milosavljevic <dannym@scratchpost.org>
at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=30629#115 >.
* gnu/system/linux-initrd.scm (lookup-procedure): 'vhash-assoc' returns
a key/value pair; match it.
2018-03-03 09:41:21 +01:00
3ede1550e8
gnu: cutadapt: Update to 1.16.
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* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.16.
[source]: Fetch via git.
[arguments]: Remove.
[native-inputs]: Replace python-nose with python-pytest.
2018-03-02 23:44:16 +01:00
62a4b952c0
gnu: python-xopen: Update to 0.3.2.
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* gnu/packages/python.scm (python-xopen): Update to 0.3.2.
2018-03-02 23:43:55 +01:00
fa5965990d
gnu: Add r-hpar.
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* gnu/packages/bioconductor.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2018-03-02 23:24:57 +01:00
2a112be09a
gnu: Add r-powerplus.
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* gnu/packages/cran.scm (r-powerplus): New variable.
2018-03-02 23:07:26 +01:00
d976454c6b
gnu: Add r-np.
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* gnu/packages/cran.scm (r-np): New variable.
2018-03-02 23:07:20 +01:00
7b81a7eabf
gnu: Add r-phontools.
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* gnu/packages/cran.scm (r-phontools): New variable.
2018-03-02 23:07:12 +01:00
68b6a67e94
gnu: Add r-complexplus.
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* gnu/packages/cran.scm (r-complexplus): New variable.
2018-03-02 23:07:04 +01:00
f96eda90d5
gnu: Add r-expm.
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* gnu/packages/cran.scm (r-expm): New variable.
2018-03-02 23:06:57 +01:00
7531ee842c
gnu: Add r-trend.
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* gnu/packages/cran.scm (r-trend): New variable.
2018-03-02 23:06:50 +01:00
d32e572489
gnu: Add r-cubature.
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* gnu/packages/cran.scm (r-cubature): New variable.
2018-03-02 23:06:41 +01:00
6615a36421
gnu: Add r-urca.
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* gnu/packages/cran.scm (r-urca): New variable.
2018-03-02 23:06:33 +01:00
5b25bc55dc
gnu: Add r-fractal.
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* gnu/packages/cran.scm (r-fractal): New variable.
2018-03-02 23:06:26 +01:00
19da7fe314
gnu: Add r-extradistr.
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* gnu/packages/cran.scm (r-extradistr): New variable.
2018-03-02 23:06:17 +01:00
4993a02ad7
gnu: Add r-tsa.
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* gnu/packages/cran.scm (r-tsa): New variable.
2018-03-02 23:06:10 +01:00
a2c079a780
gnu: Add r-wmtsa.
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* gnu/packages/cran.scm (r-wmtsa): New variable.
2018-03-02 23:06:00 +01:00
b6dc325538
gnu: Add r-tseries.
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* gnu/packages/cran.scm (r-tseries): New variable.
2018-03-02 23:05:52 +01:00
dceb159206
gnu: Add r-quantmod.
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* gnu/packages/cran.scm (r-quantmod): New variable.
2018-03-02 23:05:43 +01:00
0be7effefa
gnu: Add r-sapa.
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* gnu/packages/cran.scm (r-sapa): New variable.
2018-03-02 23:05:35 +01:00
034ac9d67a
gnu: Add r-ifultools.
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* gnu/packages/cran.scm (r-ifultools): New variable.
2018-03-02 23:05:14 +01:00
d3cb62e58d
gnu: Add r-splus2r.
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* gnu/packages/cran.scm (r-splus2r): New variable.
2018-03-02 23:05:02 +01:00
0b64332c74
gnu: Add r-leaps.
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* gnu/packages/cran.scm (r-leaps): New variable.
2018-03-02 23:03:10 +01:00
93c21ddc86
gnu: Add r-ttr.
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* gnu/packages/cran.scm (r-ttr): New variable.
2018-03-02 22:55:10 +01:00
4e35c4290e
gnu: Add r-rbiofabric.
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* gnu/packages/graph.scm (r-rbiofabric): New variable.
2018-03-02 22:23:18 +01:00
1088744d87
gnu: Add r-sna.
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* gnu/packages/cran.scm (r-sna): New variable.
2018-03-02 22:23:18 +01:00
07a2f34d5c
gnu: Add r-statnet-common.
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* gnu/packages/cran.scm (r-statnet-common): New variable.
2018-03-02 22:23:18 +01:00
5f4565b18f
gnu: Add r-network.
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* gnu/packages/cran.scm (r-network): New variable.
2018-03-02 22:23:18 +01:00
b01a1b34f2
gnu: nghttp2: Update to 1.31.0.
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* gnu/packages/web.scm (nghttp2): Update to 1.31.0.
2018-03-02 15:52:57 +01:00
6fda93e6c8
gnu: libpsl: Update to 0.20.1.
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* gnu/packages/web.scm (libpsl): Update to 0.20.1.
2018-03-02 15:52:57 +01:00
5658b4ce69
gnu: zerofree: Update to 1.1.1.
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* gnu/packages/linux.scm (zerofree): Update to 1.1.1.
2018-03-02 15:52:57 +01:00
a40f732bb6
gnu: python-webencodings: Fix typo in description.
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* gnu/packages/python-web.scm (python-webencodings)[description]: Fix typo.
2018-03-02 15:52:57 +01:00
139ecdee8e
gnu: delta: Remove redundant code.
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* gnu/packages/debug.scm (delta)[arguments]: Remove unneeded MKDIR-P
calls.
2018-03-02 15:52:56 +01:00
defe0282c2
gnu: perl-mozilla-ca: Update to 20180117.
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* gnu/packages/perl.scm (perl-mozilla-ca): Update to 20180117.
2018-03-02 15:52:56 +01:00
dc8584d2b1
gnu: perl-test-harness: Update to 3.41.
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* gnu/packages/perl-check.scm (perl-test-harness): Update to 3.41.
2018-03-02 15:52:56 +01:00
6e48fbb19a
gnu: highlight: Don't hard-code Lua version.
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* gnu/packages/pretty-print.scm (highlight)[arguments]: Construct the
Lua prefix programatically instead of hard-coding it.
2018-03-02 15:52:56 +01:00
3a5c02777d
gnu: highlight: Update to 3.42.
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* gnu/packages/pretty-print.scm (highlight): Update to 3.42.
2018-03-02 15:52:55 +01:00
467834d550
gnu: ghc-abstract-deque: Fix typos in description.
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* gnu/packages/haskell.scm (ghc-abstract-deque)[description]: Fix typos.
2018-03-02 15:52:55 +01:00
d338321ddb
gnu: qscintilla: Use HTTPS home page.
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* gnu/packages/qt.scm (qscintilla)[home-page]: Use HTTPS.
2018-03-02 15:52:55 +01:00
2c1cc27f8f
gnu: fortify-headers: Update to 0.9.
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* gnu/packages/suckless.scm (fortify-headers): Update to 0.9.
2018-03-02 15:52:55 +01:00
5c0f68e844
gnu: fossil: Update phase style.
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* gnu/packages/version-control.scm (fossil)[arguments]: Substitute
INVOKE for SYSTEM* and end phases with #t.
2018-03-02 15:52:54 +01:00
f136c8f23d
gnu: gnome-mpv: Update to 0.14.
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* gnu/packages/video.scm (gnome-mpv): Update to 0.14.
2018-03-02 15:52:54 +01:00
65a3c342b0
gnu: ath9k-htc-firmware: Use INSTALL-FILE.
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* gnu/packages/firmware.scm (ath9k-htc-firmware)[arguments]: Substitute
INSTALL-FILE for COPY-FILE with MKDIR-P.
2018-03-02 15:52:54 +01:00
f563d19904
gnu: ovmf: Update phase style.
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* gnu/packages/firmware.scm (ovmf): Substitute INVOKE for SYSTEM* and
end phases with #t.
2018-03-02 15:52:54 +01:00
0dae492195
gnu: ovmf: Use HTTPS home page.
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* gnu/packages/firmware.scm (ovmf)[home-page]: Use HTTPS.
2018-03-02 15:52:54 +01:00
3ebf12ea0e
gnu: b43-tools: Use HTTPS home page.
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* gnu/packages/firmware.scm (b43-tools)[home-page]: Use HTTPS.
2018-03-02 15:52:53 +01:00
Ricardo Wurmus
Ludovic Courtès
Tobias Geerinckx-Rice