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Author SHA1 Message Date
Ricardo Wurmus 0d0bcaa08e gnu: macs: Update to 2.1.0.20151222. 
* gnu/packages/bioinformatics.scm (macs): Update to 2.1.0.20151222.
 2016-02-12 18:16:16 +01:00
Ricardo Wurmus 43ec07f17c gnu: macs: Use "pypi-uri". 
* gnu/packages/bioinformatics.scm (macs)[source]: Use "pypi-uri" to
  build source URI.
 2016-02-12 18:16:16 +01:00
Ricardo Wurmus b074e7d486 gnu: python2-fastlmm: Update to 0.2.21. 
* gnu/packages/python.scm (python2-fastlmm): Update to 0.2.21.
 2016-02-12 10:58:46 +01:00
Ricardo Wurmus 3f2e9675fb gnu: python2-pysnptools: Update to 0.3.5. 
* gnu/packages/python.scm (python2-pysnptools): Update to 0.3.5.
 2016-02-12 10:58:46 +01:00
Ricardo Wurmus ef9b4c04a4 gnu: python-numpy-bootstrap: Update to 1.10.4. 
* gnu/packages/python.scm (python-numpy-bootstrap): Update to 1.10.4.
 2016-02-12 10:58:46 +01:00
Ricardo Wurmus 1b96f069e6 gnu: python-pandas: Update to 0.16.2. 
* gnu/packages/python.scm (python-pandas): Update to 0.16.2.
 2016-02-12 10:58:46 +01:00
Ni* Gillmann 3ccdd4305e gnu: Add gnunet-gtk. 
* gnu/packages/gnunet.scm (gnunet-gtk): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2016-02-12 10:17:05 +01:00
Ricardo Wurmus 1eb6bbd8c0 gnu: gnunet: Add gstreamer and plugins to inputs. 
* gnu/packages/gnunet.scm (gnunet)[inputs]: Add "gstreamer" and
  "gst-plugins-base".
 2016-02-12 08:09:19 +01:00
Tobias Geerinckx-Rice 3a9cfba879 install: Add btrfs-progs to the image. 
* gnu/system/install.scm (installation-os)[packages]: Add BTRFS-PROGS.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-11 21:39:30 -05:00
Tobias Geerinckx-Rice fc686f9a19 gnu: Add btrfs-progs. 
* gnu/packages/linux.scm (btrfs-progs): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-11 21:02:06 -05:00
Mark H Weaver e57127fbe1 Revert "gnu: nginx: Update to 1.9.11. [fixes CVE-2016-{0742, 0746, 0747}]" 
This reverts commit 759246ad48.
 2016-02-11 16:31:19 -05:00
Mark H Weaver 59d4cf1c58 gnu: icecat: Update bundled graphite2 to 1.3.5 for security fixes. 
* gnu/packages/patches/icecat-update-graphite2.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.  Add TODO
  comment about using the system graphite2 in the future.
 2016-02-11 14:59:16 -05:00
Efraim Flashner 759246ad48 gnu: nginx: Update to 1.9.11. [fixes CVE-2016-{0742, 0746, 0747}] 
* gnu/packages/web.scm (nginx): Update to 1.9.11.
 2016-02-11 21:36:43 +02:00
Efraim Flashner d2ca99ccbd gnu: feh: Update to 2.14.1. 
* gnu/packages/feh.scm (feh): Update to 2.14.1.
 2016-02-11 12:46:55 +02:00
Efraim Flashner 9b719875be gnu: obs: Update to 0.13.1. 
* gnu/packages/video.scm (obs): Update to 0.13.1.
 2016-02-11 11:11:44 +02:00
Efraim Flashner 50beb63b7a gnu: fribidi: Update to 0.19.7. 
* gnu/packages/fribidi.scm (fribidi): Update to 0.19.7.
 2016-02-11 11:00:36 +02:00
Efraim Flashner 992b527d52 gnu: alsa-utils: Update to 1.1.0. 
* gnu/packages/linux.scm (alsa-utils): Update to 1.1.0.
 2016-02-11 09:26:55 +02:00
Ricardo Wurmus 138e76972a gnu: zynaddsubfx: Update to 2.5.3. 
* gnu/packages/music.scm (zynaddsubfx): Update to 2.5.3.
 2016-02-11 08:25:03 +01:00
Leo Famulari a2a06c51ab gnu: htop: Update to 2.0.0. 
* gnu/packages/admin.scm (htop): Update to 2.0.0.
 2016-02-11 00:31:10 -05:00
Al McElrath 8a75c589aa gnu: Add notmuch-addrlookup-c. 
* gnu/packages/mail.scm (notmuch-addrlookup-c): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-10 17:08:24 -05:00
Ludovic Courtès dedb8d5ece doc: Provide more details about system installation. 
* doc/guix.texi (System Installation): Turn all subsections into
individual nodes.
(Limitations): Update the number of packages.
(Preparing for Installation)[Keyboard Layout, Networking, Disk
Partitionning]: New subsections.  Move the 'cow-store' thing to...
(Proceeding with the Installation): ... here.  Describe things in more
detail.
(Base Services): Add index entry for "keyboard layout".

Co-authored-by: Petter <petter@mykolab.ch>.
 2016-02-10 21:47:31 +01:00
Ludovic Courtès c96ba2cf5e install: Do not cache lookup failures. 
Possibly fixes <http://bugs.gnu.org/22209>.

* gnu/system/install.scm (%nscd-minimal-caches)[negative-time-to-live]:
Set to zero.
 2016-02-10 21:47:31 +01:00
Leo Famulari 8823ed4e12 gnu: Fix syntax error in postgresql-service. 
Fixes <http://bugs.gnu.org/22618>.
Reported by Danny Milosavljevic <dannym@scratchpost.org>.

* gnu/services/databases.scm (%default-postgres-config): Add missing
quote in default configuration.
 2016-02-10 15:34:11 -05:00
Mark H Weaver 16114c3494 gnu: mit-krb5: Update to 1.13.3; add fixes for CVE-2015-{8629,8630,8631}. 
* gnu/packages/patches/mit-krb5-CVE-2015-2695-pt1.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2695-pt2.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2696.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2697.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2698-pt1.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-2698-pt2.patch: Delete files.
* gnu/packages/patches/mit-krb5-CVE-2015-8629.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-8630.patch,
  gnu/packages/patches/mit-krb5-CVE-2015-8631.patch,
  gnu/packages/patches/mit-krb5-init-context-null-spnego.patch: New files.
* gnu-system.am (dist_patch_DATA): Adjust accordingly.
* gnu/packages/mit-krb5.scm (mit-krb5): Update to 1.13.3.
  [source]: Update URI to download conventional .tar.gz file.  Add patches.
  [native-inputs]: Remove old patches-as-inputs.
  [arguments]: Remove hacks needed to cope with the older unconventional
  tarball that contained an inner source tarball and signature: Remove
  #:modules argument, and the custom 'unpack' and 'apply-patches' phases.
 2016-02-10 10:41:11 -05:00
Mark H Weaver 42395bf514 gnu: nettle: Update to 3.2 [fixes CVE-2015-{8803,8804,8805}]. 
* gnu/packages/nettle.scm (nettle): Update to 3.2.
 2016-02-10 10:41:11 -05:00
Ludovic Courtès 4ecbf6d282 gnu: haunt: Wrap 'haunt' command so that it finds its modules. 
* gnu/packages/guile.scm (haunt)[arguments]: New field.
 2016-02-10 15:15:17 +01:00
Ludovic Courtès f5582b2c1d system: Selected locale is automatically built. 
Fixes <http://bugs.gnu.org/22572>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/system/locale.scm (%not-dot): New variable.
(denormalize-codeset, locale-name->definition): New procedures.
* gnu/system.scm (locale-name->definition*): New procedure.
(operating-system-locale-directory): Instead of raising an error, add
the missing locale.
* doc/guix.texi (Locales): Adjust accordingly.
 2016-02-10 15:15:17 +01:00
Alex Kost 32e1611206 gnu: emacs-debbugs: Update to 0.9. 
* gnu/packages/emacs.scm (emacs-debbugs): Update to 0.9.
[propagated-inputs]: Add 'emacs-async'.
 2016-02-10 01:34:17 +03:00
Alex Kost b654de6da1 gnu: Add emacs-async. 
* gnu/packages/emacs.scm (emacs-async): New variable.
 2016-02-10 01:34:17 +03:00
Alex Kost 3db5ed11da gnu: magit: Update to 2.5.0. 
* gnu/packages/emacs.scm (magit): Update to 2.5.0.
[propagated-inputs]: Add 'emacs-with-editor'.
[arguments]: Make with WITH_EDITOR_DIR.
 2016-02-10 01:34:17 +03:00
Alex Kost 2b0e43003c gnu: Add emacs-with-editor. 
* gnu/packages/emacs.scm (emacs-with-editor): New variable.
 2016-02-10 01:34:17 +03:00
Alex Kost 2c04e2eec8 emacs: 'C-u M-x guix-edit' prompts for directory. 
* emacs/guix-base.el (guix-read-directory): New procedure.
(guix-find-location, guix-edit): Add optional 'directory' argument.
* emacs/guix-ui-package.el (guix-package-list-edit)
(guix-output-list-edit): Likewise.
* doc/emacs.texi (Emacs Commands): Mention "C-u".
 2016-02-10 01:31:19 +03:00
Pjotr Prins f1957fc145 gnu: Add munge. 
* gnu/packages/admin.scm (munge): New variable.
 2016-02-09 20:43:32 +01:00
Leo Famulari 9bee9d87dc gnu: acme: Disable egg compression. 
* gnu/packages/python.scm (acme)[arguments]: Add
'disable-egg-compression' phase.
 2016-02-08 23:45:06 -05:00
Leo Famulari 0c7320dc89 gnu: letsencrypt and acme: Update to 0.3.0. 
These packages should be updated together.

* gnu/packages/tls.scm (letsencrypt): Update to 0.3.0.
(acme): Update to 0.3.0.
 2016-02-08 23:04:07 -05:00
David Thompson fe65ef54c5 youtube-dl: Update to 2016.02.05.1. 
* gnu/packages/video.scm (youtube-dl): Update to 2016.02.05.1.
 2016-02-08 21:47:51 -05:00
Ludovic Courtès 939c5c31d6 system: Add Texinfo to '%base-packages'. 
Fixes <http://bugs.gnu.org/22598>.
Reported by myglc2 <myglc2@gmail.com>.

* gnu/system.scm (%base-packages): Add TEXINFO.
 2016-02-08 23:46:46 +01:00
Ludovic Courtès 1f1ff6a0e7 linux-container: Accept file systems with a UUID 'source'. 
* gnu/system/linux-container.scm (containerized-operating-system)[user-file-systems]:
Check whether SOURCE is a string before calling 'string-prefix?'.
 2016-02-08 23:46:46 +01:00
Ludovic Courtès 6eb439070a file-systems: Spawn a Bournish REPL upon fsck failure. 
Fixes <http://bugs.gnu.org/22588>.
Reported by Mark H Weaver <mhw@netris.org>.

* gnu/build/file-systems.scm (check-file-system): Pass
%BOURNISH-LANGUAGE as the argument to 'start-repl'.
* gnu/services.scm (activation-script): Add (guix build bournish).
* gnu/services/base.scm (file-system-shepherd-service)[imported-modules]:
Likewise.
* gnu/system/linux-container.scm (container-script): Likewise.
* gnu/system/vm.scm (expression->derivation-in-linux-vm): Likewise.
 2016-02-08 23:46:46 +01:00
Ludovic Courtès f2e4805b7e Add (guix build bournish) and use it in the initrd. 
* guix/build/bournish.scm: New file.
* Makefile.am (MODULES): Add it.
* gnu/system/linux-initrd.scm (base-initrd): Add (guix build bournish)
and use it.
 2016-02-08 23:46:46 +01:00
Nils Gillmann 423eef362b gnu: add lispf4 
* gnu/packages/lisp.scm (lispf4): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-02-08 15:09:34 -05:00
Mark H Weaver 7fb51d9742 gnu: dbus: Use https source URL. 
* gnu/packages/glib.scm (dbus)[source]: Use https URL.
 2016-02-08 08:59:00 -05:00
Rene Saavedra 8b8775454b gnu: Add nautilus. 
* gnu/packages/gnome.scm (nautilus): New variable.

Co-authored-by: 宋文武 <iyzsong@gmail.com>
 2016-02-08 13:48:16 +08:00
Leo Famulari 16095d2729 gnu: python-pillow: Update to 3.1.1 [fixes CVE-2016-{0740, 0775}]. 
* gnu/packages/python.scm (python-pillow, python2-pillow): Update to 3.1.1.
 2016-02-08 00:25:40 -05:00
Christopher Allan Webber 3d4f9d5cde gnu: Add assword. 
* gnu/packages/password-utils.scm (assword): New variable.
 2016-02-07 14:57:52 -08:00
Christopher Allan Webber 0bdc1671e4 gnu: Add python2-xdo. 
* gnu/packages/python.scm (python2-xdo): New variable.
 2016-02-07 14:57:52 -08:00
Ludovic Courtès 57b7b8cd60 gnu: python-matplotlib: Define 'python2-variant'. 
* gnu/packages/python.scm (python2-numpy): Take the result of
'package-with-python2' directly.
(python2-scipy): Likewise.
(python-matplotlib)[properties]: New field.
(python2-matplotlib): Call 'strip-python2-variant'.
 2016-02-07 23:46:01 +01:00
Ludovic Courtès 48b311b1b3 gnu: python-cython: Define 'python2-variant'. 
* gnu/packages/python.scm (python-cython)[properties]: New field.
(python2-cython): Use 'strip-python2-variant'.
 2016-02-07 23:46:01 +01:00
Ludovic Courtès 7ec42f1d8a gnu: python-pycairo: Define 'python2-variant'. 
* gnu/packages/gtk.scm (python-pycairo)[properties]: New field.
(python2-pycairo): Use 'strip-python2-variant'.
 2016-02-07 23:46:01 +01:00
Ludovic Courtès 00f2bf3433 gnu: python-pygobject: Define 'python2-variant'. 
* gnu/packages/glib.scm (python-pygobject)[properties]: New field.
(python2-pygobject): Use 'strip-python2-variant'.
 2016-02-07 23:46:01 +01:00