195 lines
7.8 KiB
Scheme
195 lines
7.8 KiB
Scheme
;;; GNU Guix --- Functional package management for GNU
|
|
;;; Copyright © 2017 John Darrington <jmd@gnu.org>
|
|
;;; Copyright © 2017 Ricardo Wurmus <rekado@elephly.net>
|
|
;;; Copyright © 2014 Ludovic Courtès <ludo@gnu.org>
|
|
;;; Copyright © 2014 Mark H Weaver <mhw@netris.org>
|
|
;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org>
|
|
;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
|
|
;;;
|
|
;;; This file is part of GNU Guix.
|
|
;;;
|
|
;;; GNU Guix is free software; you can redistribute it and/or modify it
|
|
;;; under the terms of the GNU General Public License as published by
|
|
;;; the Free Software Foundation; either version 3 of the License, or (at
|
|
;;; your option) any later version.
|
|
;;;
|
|
;;; GNU Guix is distributed in the hope that it will be useful, but
|
|
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
|
|
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
|
;;; GNU General Public License for more details.
|
|
;;;
|
|
;;; You should have received a copy of the GNU General Public License
|
|
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
|
|
|
|
(define-module (gnu packages image-processing)
|
|
#:use-module ((guix licenses) #:prefix license:)
|
|
#:use-module (guix packages)
|
|
#:use-module (guix utils)
|
|
#:use-module (guix download)
|
|
#:use-module (guix build-system cmake)
|
|
#:use-module (guix build-system gnu)
|
|
#:use-module (gnu packages)
|
|
#:use-module (gnu packages algebra)
|
|
#:use-module (gnu packages boost)
|
|
#:use-module (gnu packages compression)
|
|
#:use-module (gnu packages documentation)
|
|
#:use-module (gnu packages fontutils)
|
|
#:use-module (gnu packages gl)
|
|
#:use-module (gnu packages gnome)
|
|
#:use-module (gnu packages graphics)
|
|
#:use-module (gnu packages graphviz)
|
|
#:use-module (gnu packages image)
|
|
#:use-module (gnu packages maths)
|
|
#:use-module (gnu packages perl)
|
|
#:use-module (gnu packages pkg-config)
|
|
#:use-module (gnu packages python)
|
|
#:use-module (gnu packages serialization)
|
|
#:use-module (gnu packages xiph)
|
|
#:use-module (gnu packages xml)
|
|
#:use-module (gnu packages xorg))
|
|
|
|
;; We use the latest snapshot of this package because the latest release is
|
|
;; from 2011 and has known vulnerabilities that cannot easily be fixed by
|
|
;; applying patches.
|
|
(define-public dcmtk
|
|
(package
|
|
(name "dcmtk")
|
|
(version "3.6.1_20170228")
|
|
(source (origin
|
|
(method url-fetch)
|
|
(uri (string-append "ftp://dicom.offis.de/pub/dicom/offis/"
|
|
"software/dcmtk/snapshot/dcmtk-"
|
|
version ".tar.gz"))
|
|
(sha256
|
|
(base32
|
|
"04cwfx8yrscqcd59mxk2fh6314ckayi9cp68iql5a57pf2pg5qld"))))
|
|
(build-system gnu-build-system)
|
|
(inputs
|
|
`(("libtiff" ,libtiff)
|
|
("libpng" ,libpng)
|
|
("doxygen" ,doxygen)
|
|
("zlib" ,zlib)))
|
|
(native-inputs
|
|
`(("perl" ,perl)))
|
|
(home-page "http://dcmtk.org")
|
|
(synopsis "Libraries and programs implementing parts of the DICOM standard")
|
|
(description "DCMTK is a collection of libraries and applications
|
|
implementing large parts the DICOM standard. It includes software for
|
|
examining, constructing and converting DICOM image files, handling offline
|
|
media, sending and receiving images over a network connection, as well as
|
|
demonstrative image storage and worklist servers.")
|
|
(license (license:fsf-free
|
|
"file://COPYRIGHT"
|
|
"A union of the Apache 2.0 licence and various non-copyleft
|
|
licences similar to the Modified BSD licence."))))
|
|
|
|
(define-public mia
|
|
(package
|
|
(name "mia")
|
|
(version "2.4.6")
|
|
(source (origin
|
|
(method url-fetch)
|
|
(uri (string-append "mirror://sourceforge/mia/mia/"
|
|
(version-major+minor version)
|
|
"/mia-" version ".tar.xz"))
|
|
(sha256
|
|
(base32
|
|
"0j4nd5z7i3v199jh7hqqhwd4g7snchizkc7rhzanpvngqg91m1pb"))))
|
|
(build-system cmake-build-system)
|
|
(arguments
|
|
`(#:configure-flags
|
|
(list "-DMIA_CREATE_NIPYPE_INTERFACES=0"
|
|
(string-append "-DCMAKE_INSTALL_LIBDIR="
|
|
(assoc-ref %outputs "out") "/lib")
|
|
"-DCMAKE_CXX_FLAGS=-fpermissive")))
|
|
(inputs
|
|
`(("boost" ,boost)
|
|
("dcmtk" ,dcmtk)
|
|
("doxygen" ,doxygen)
|
|
("eigen" ,eigen)
|
|
("fftw" ,fftw)
|
|
("fftwf" ,fftwf)
|
|
("gsl" ,gsl)
|
|
("gts" ,gts)
|
|
("hdf5" ,hdf5)
|
|
("itpp" ,itpp)
|
|
("libjpeg" ,libjpeg)
|
|
("libpng" ,libpng)
|
|
("libtiff" ,libtiff)
|
|
("libxml" ,libxml2)
|
|
("libxml++" ,libxml++)
|
|
("maxflow" ,maxflow)
|
|
("niftilib" ,niftilib)
|
|
("nlopt" ,nlopt)
|
|
("openexr" ,openexr)
|
|
("python-lxml" ,python2-lxml)
|
|
("vtk" ,vtk)))
|
|
(native-inputs
|
|
`(("pkg-config" ,pkg-config)
|
|
("python" ,python-2)))
|
|
(home-page "http://mia.sourceforge.net")
|
|
(synopsis "Toolkit for gray scale medical image analysis")
|
|
(description "MIA provides a combination of command line tools, plug-ins,
|
|
and libraries that make it possible run image processing tasks interactively
|
|
in a command shell and to prototype using the shell's scripting language. It
|
|
is built around a plug-in structure that makes it easy to add functionality
|
|
without compromising the original code base and it makes use of a wide variety
|
|
of external libraries that provide additional functionality.")
|
|
(license license:gpl3+)))
|
|
|
|
(define-public vtk
|
|
(package
|
|
(name "vtk")
|
|
(version "7.1.0")
|
|
(source (origin
|
|
(method url-fetch)
|
|
(uri (string-append "http://www.vtk.org/files/release/"
|
|
(version-major+minor version)
|
|
"/VTK-" version ".tar.gz"))
|
|
(sha256
|
|
(base32
|
|
"0yj96z58haan77gzilnqp7xpf8hg5jk11a3jx55p2ksd400s0gjz"))))
|
|
(build-system cmake-build-system)
|
|
(arguments
|
|
'(#:build-type "Release" ;Build without '-g' to save space.
|
|
;; -DVTK_USE_SYSTEM_NETCDF:BOOL=TRUE requires netcdf_cxx
|
|
#:configure-flags '("-DVTK_USE_SYSTEM_EXPAT:BOOL=TRUE"
|
|
"-DVTK_USE_SYSTEM_FREETYPE:BOOL=TRUE"
|
|
"-DVTK_USE_SYSTEM_HDF5:BOOL=TRUE"
|
|
"-DVTK_USE_SYSTEM_JPEG:BOOL=TRUE"
|
|
"-DVTK_USE_SYSTEM_JSONCPP:BOOL=TRUE"
|
|
"-DVTK_USE_SYSTEM_LIBXML2:BOOL=TRUE"
|
|
"-DVTK_USE_SYSTEM_OGGTHEORA:BOOL=TRUE"
|
|
"-DVTK_USE_SYSTEM_PNG:BOOL=TRUE"
|
|
"-DVTK_USE_SYSTEM_TIFF:BOOL=TRUE"
|
|
"-DVTK_USE_SYSTEM_ZLIB:BOOL=TRUE")
|
|
#:tests? #f)) ;XXX: no "test" target
|
|
(inputs
|
|
`(("libXt" ,libxt)
|
|
("xproto" ,xproto)
|
|
("libX11" ,libx11)
|
|
("libxml2" ,libxml2)
|
|
("mesa" ,mesa)
|
|
("glu" ,glu)
|
|
("expat" ,expat)
|
|
("freetype" ,freetype)
|
|
("hdf5" ,hdf5)
|
|
("jpeg" ,libjpeg)
|
|
("jsoncpp" ,jsoncpp)
|
|
("libogg" ,libogg)
|
|
("libtheora" ,libtheora)
|
|
("png" ,libpng)
|
|
("tiff" ,libtiff)
|
|
("zlib" ,zlib)))
|
|
(home-page "http://www.vtk.org/")
|
|
(synopsis "Libraries for 3D computer graphics")
|
|
(description
|
|
"The Visualization Toolkit (VTK) is a C++ library for 3D computer graphics,
|
|
image processing and visualization. It supports a wide variety of
|
|
visualization algorithms including: scalar, vector, tensor, texture, and
|
|
volumetric methods; and advanced modeling techniques such as: implicit
|
|
modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay
|
|
triangulation. VTK has an extensive information visualization framework, has
|
|
a suite of 3D interaction widgets, supports parallel processing, and
|
|
integrates with various databases on GUI toolkits such as Qt and Tk.")
|
|
(license license:bsd-3)))
|