71e789319c
* gnu/packages/mpi.scm (hwloc-2.0): New variable. * gnu/packages/patches/hwloc-tests-without-sysfs.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
229 lines
9.9 KiB
Scheme
229 lines
9.9 KiB
Scheme
;;; GNU Guix --- Functional package management for GNU
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;;; Copyright © 2014, 2015 Eric Bavier <bavier@member.fsf.org>
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;;; Copyright © 2014, 2015, 2016, 2017, 2018 Ludovic Courtès <ludo@gnu.org>
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;;; Copyright © 2014 Ian Denhardt <ian@zenhack.net>
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;;; Copyright © 2016 Andreas Enge <andreas@enge.fr>
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;;; Copyright © 2017 Dave Love <fx@gnu.org>
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;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il>
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;;;
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;;; This file is part of GNU Guix.
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;;;
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;;; GNU Guix is free software; you can redistribute it and/or modify it
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;;; under the terms of the GNU General Public License as published by
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;;; the Free Software Foundation; either version 3 of the License, or (at
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;;; your option) any later version.
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;;;
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;;; GNU Guix is distributed in the hope that it will be useful, but
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;;; WITHOUT ANY WARRANTY; without even the implied warranty of
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;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;;; GNU General Public License for more details.
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;;;
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;;; You should have received a copy of the GNU General Public License
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;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
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(define-module (gnu packages mpi)
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#:use-module (guix packages)
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#:use-module ((guix licenses)
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#:hide (expat))
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#:use-module (guix download)
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#:use-module (guix utils)
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#:use-module (guix build-system gnu)
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#:use-module (gnu packages)
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#:use-module (gnu packages gcc)
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#:use-module (gnu packages linux)
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#:use-module (gnu packages pciutils)
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#:use-module (gnu packages xorg)
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#:use-module (gnu packages gtk)
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#:use-module (gnu packages xml)
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#:use-module (gnu packages perl)
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#:use-module (gnu packages ncurses)
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#:use-module (gnu packages pkg-config)
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#:use-module (gnu packages valgrind)
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#:use-module (srfi srfi-1)
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#:use-module (ice-9 match))
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(define-public hwloc
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;; Note: For now we keep 1.x as the default because many packages have yet
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;; to migrate to 2.0.
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(package
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(name "hwloc")
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(version "1.11.8")
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(source (origin
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(method url-fetch)
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(uri (string-append "https://www.open-mpi.org/software/hwloc/v"
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(version-major+minor version)
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"/downloads/hwloc-" version ".tar.bz2"))
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(sha256
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(base32
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"0karxv4r1r8sa7ki5aamlxdvyvz0bvzq4gdhq0yi5nc4a0k11vzc"))))
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(build-system gnu-build-system)
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(outputs '("out" ;'lstopo' & co., depends on Cairo, libx11, etc.
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"lib" ;small closure
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"debug"))
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(inputs
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`(("libx11" ,libx11)
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("cairo" ,cairo)
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("ncurses" ,ncurses)
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("expat" ,expat)
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,@(if (not (string-prefix? "armhf"
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(or (%current-target-system)
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(%current-system))))
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`(("numactl" ,numactl))
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'())))
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(propagated-inputs
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;; hwloc.pc lists it in 'Requires.private'.
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`(("libpciaccess" ,libpciaccess)))
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(native-inputs
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`(("pkg-config" ,pkg-config)))
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(arguments
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`(#:configure-flags '("--localstatedir=/var")
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#:phases
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(modify-phases %standard-phases
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(add-after 'install 'refine-libnuma
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;; Give -L arguments for libraries to avoid propagation
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(lambda* (#:key inputs outputs #:allow-other-keys)
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(let ((out (assoc-ref outputs "lib"))
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(numa (assoc-ref inputs "numactl")))
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(substitute* (map (lambda (f) (string-append out "/" f))
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'("lib/pkgconfig/hwloc.pc" "lib/libhwloc.la"))
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(("-lnuma" lib)
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(string-append "-L" numa "/lib " lib))))))
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(add-after 'install 'avoid-circular-references
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((lib (assoc-ref outputs "lib")))
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;; Suppress the 'prefix=' and 'exec_prefix=' lines so that the
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;; "lib" output doesn't refer to "out".
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(substitute* (string-append lib "/lib/pkgconfig/hwloc.pc")
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(("^.*prefix=.*$")
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""))
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#t))))))
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(home-page "https://www.open-mpi.org/projects/hwloc/")
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(synopsis "Abstraction of hardware architectures")
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(description
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"hwloc provides a portable abstraction (across OS,
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versions, architectures, ...) of the hierarchical topology of modern
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architectures, including NUMA memory nodes, sockets, shared caches, cores and
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simultaneous multithreading. It also gathers various attributes such as cache
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and memory information. It primarily aims at helping high-performance
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computing applications with gathering information about the hardware so as to
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exploit it accordingly and efficiently.
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hwloc may display the topology in multiple convenient formats. It also offers
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a powerful programming interface to gather information about the hardware,
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bind processes, and much more.")
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(license bsd-3)))
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(define-public hwloc-2.0
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;; Note: 2.0 isn't the default yet, see above.
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(package
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(inherit hwloc)
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(version "2.0.0")
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(source (origin
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(method url-fetch)
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(uri (string-append "https://www.open-mpi.org/software/hwloc/v"
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(version-major+minor version)
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"/downloads/hwloc-" version ".tar.bz2"))
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(sha256
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(base32
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"021765f9y6pxcxrvfpzzwaig16ypfbph5xjpkd29qkhzs9r6zrcr"))
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(patches (search-patches "hwloc-tests-without-sysfs.patch"))))
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;; libnuma is no longer needed.
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(inputs (alist-delete "numactl" (package-inputs hwloc)))))
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(define-public openmpi
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(package
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(name "openmpi")
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(version "1.10.7")
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(source
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(origin
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(method url-fetch)
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(uri (string-append "https://www.open-mpi.org/software/ompi/v"
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(version-major+minor version)
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"/downloads/openmpi-" version ".tar.bz2"))
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(sha256
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(base32
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"142s1vny9gllkq336yafxayjgcirj2jv0ddabj879jgya7hyr2d0"))))
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(build-system gnu-build-system)
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(inputs
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`(("hwloc" ,hwloc "lib")
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("gfortran" ,gfortran)
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("libfabric" ,libfabric)
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,@(match (%current-system)
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((member (package-supported-systems psm))
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`(("psm" ,psm)))
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(_ `()))
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("rdma-core" ,rdma-core)
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("valgrind" ,valgrind)))
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(native-inputs
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`(("pkg-config" ,pkg-config)
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("perl" ,perl)))
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(outputs '("out" "debug"))
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(arguments
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`(#:configure-flags `("--enable-mpi-ext=affinity" ;cr doesn't work
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"--enable-memchecker"
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"--with-sge"
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;; VampirTrace is obsoleted by scorep and disabling
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;; it reduces the closure size considerably.
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"--disable-vt"
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,(string-append "--with-valgrind="
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(assoc-ref %build-inputs "valgrind"))
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,(string-append "--with-hwloc="
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(assoc-ref %build-inputs "hwloc")))
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#:phases (modify-phases %standard-phases
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(add-before 'build 'remove-absolute
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(lambda _
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;; Remove compiler absolute file names (OPAL_FC_ABSOLUTE
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;; etc.) to reduce the closure size. See
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;; <https://lists.gnu.org/archive/html/guix-devel/2017-07/msg00388.html>
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;; and
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;; <https://www.mail-archive.com/users@lists.open-mpi.org//msg31397.html>.
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(substitute* '("orte/tools/orte-info/param.c"
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"oshmem/tools/oshmem_info/param.c"
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"ompi/tools/ompi_info/param.c")
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(("_ABSOLUTE") ""))
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;; Avoid valgrind (which pulls in gdb etc.).
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(substitute*
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'("./ompi/mca/io/romio/src/io_romio_component.c")
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(("MCA_io_romio_COMPLETE_CONFIGURE_FLAGS")
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"\"[elided to reduce closure]\""))
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#t))
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(add-before 'build 'scrub-timestamps ;reproducibility
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(lambda _
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(substitute* '("ompi/tools/ompi_info/param.c"
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"orte/tools/orte-info/param.c"
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"oshmem/tools/oshmem_info/param.c")
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((".*(Built|Configured) on.*") ""))
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#t))
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(add-after 'install 'remove-logs ;reproducibility
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((out (assoc-ref outputs "out")))
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(for-each delete-file (find-files out "config.log"))
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#t))))))
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(home-page "http://www.open-mpi.org")
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(synopsis "MPI-3 implementation")
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(description
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"The Open MPI Project is an MPI-3 implementation that is developed and
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maintained by a consortium of academic, research, and industry partners. Open
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MPI is therefore able to combine the expertise, technologies, and resources
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from all across the High Performance Computing community in order to build the
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best MPI library available. Open MPI offers advantages for system and
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software vendors, application developers and computer science researchers.")
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;; See file://LICENSE
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(license bsd-2)))
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(define-public openmpi-thread-multiple
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(package
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(inherit openmpi)
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(name "openmpi-thread-multiple")
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(arguments
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(substitute-keyword-arguments (package-arguments openmpi)
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((#:configure-flags flags)
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`(cons "--enable-mpi-thread-multiple" ,flags))))
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(description " This version of Open@tie{}MPI has an implementation of
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@code{MPI_Init_thread} that provides @code{MPI_THREAD_MULTIPLE}. This won't
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work correctly with all transports (such as @code{openib}), and the
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performance is generally worse than the vanilla @code{openmpi} package, which
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only provides @code{MPI_THREAD_FUNNELED}.")))
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