545 lines
16 KiB
Diff
545 lines
16 KiB
Diff
This patch was created by Roel Janssen <roel@gnu.org>.
|
|
|
|
Circos uses paths relative to the "circos" script to find its Perl modules.
|
|
This patch removes that mechanism, and instead expects the 'Circos' modules
|
|
to be available in the global Perl path.
|
|
|
|
diff -crB circos-0.69-6/bin/circos circos-0.69-6-new/bin/circos
|
|
*** circos-0.69-6/bin/circos 2016-02-19 01:42:59.000000000 +0100
|
|
--- circos-0.69-6-new/bin/circos 2018-01-12 09:59:25.662731269 +0100
|
|
***************
|
|
*** 474,486 ****
|
|
|
|
use strict;
|
|
use warnings;
|
|
- use FindBin;
|
|
use Getopt::Long qw(:config pass_through posix_default auto_abbrev);
|
|
use Pod::Usage;
|
|
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
use Circos;
|
|
|
|
use Cwd;
|
|
--- 474,482 ----
|
|
diff -crB circos-0.69-6/lib/Circos/Colors.pm circos-0.69-6-new/lib/Circos/Colors.pm
|
|
*** circos-0.69-6/lib/Circos/Colors.pm 2015-03-17 01:25:43.000000000 +0100
|
|
--- circos-0.69-6-new/lib/Circos/Colors.pm 2018-01-12 10:10:39.174797379 +0100
|
|
***************
|
|
*** 49,55 ****
|
|
|
|
use Carp qw( carp confess croak );
|
|
use Digest::MD5 qw(md5_hex);
|
|
- use FindBin;
|
|
use File::Basename;
|
|
use File::Spec::Functions;
|
|
use File::Temp qw(tempdir);
|
|
--- 49,54 ----
|
|
***************
|
|
*** 65,74 ****
|
|
#use Time::HiRes qw(gettimeofday tv_interval);
|
|
#use List::Util qw( max min );
|
|
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
-
|
|
use POSIX qw(pow);
|
|
|
|
use Circos::Configuration;
|
|
--- 64,69 ----
|
|
diff -crB circos-0.69-6/lib/Circos/Configuration.pm circos-0.69-6-new/lib/Circos/Configuration.pm
|
|
*** circos-0.69-6/lib/Circos/Configuration.pm 2015-03-17 22:11:01.000000000 +0100
|
|
--- circos-0.69-6-new/lib/Circos/Configuration.pm 2018-01-12 10:11:41.064008273 +0100
|
|
***************
|
|
*** 59,68 ****
|
|
use Params::Validate qw(:all);
|
|
use List::MoreUtils qw(uniq);
|
|
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
-
|
|
use Circos::Constants;
|
|
use Circos::Debug;
|
|
use Circos::Utils;
|
|
--- 59,64 ----
|
|
diff -crB circos-0.69-6/lib/Circos/DataPoint.pm circos-0.69-6-new/lib/Circos/DataPoint.pm
|
|
*** circos-0.69-6/lib/Circos/DataPoint.pm 2014-05-12 18:20:19.000000000 +0200
|
|
--- circos-0.69-6-new/lib/Circos/DataPoint.pm 2018-01-12 10:11:54.888270731 +0100
|
|
***************
|
|
*** 38,51 ****
|
|
|
|
use Carp qw( carp confess croak );
|
|
use Data::Dumper;
|
|
- use FindBin;
|
|
use GD::Image;
|
|
use Params::Validate qw(:all);
|
|
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
-
|
|
use Circos::Configuration; # qw(%CONF $DIMS);
|
|
use Circos::Constants;
|
|
use Circos::Debug;
|
|
--- 38,46 ----
|
|
diff -crB circos-0.69-6/lib/Circos/Debug.pm circos-0.69-6-new/lib/Circos/Debug.pm
|
|
*** circos-0.69-6/lib/Circos/Debug.pm 2015-03-24 01:26:13.000000000 +0100
|
|
--- circos-0.69-6-new/lib/Circos/Debug.pm 2018-01-12 10:12:07.192502006 +0100
|
|
***************
|
|
*** 63,75 ****
|
|
|
|
use Carp qw( carp confess croak );
|
|
use Data::Dumper;
|
|
- use FindBin;
|
|
use Memoize;
|
|
use List::MoreUtils qw(uniq);
|
|
use Time::HiRes qw(gettimeofday tv_interval);
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
|
|
use Circos::Constants;
|
|
|
|
--- 63,71 ----
|
|
diff -crB circos-0.69-6/lib/Circos/Division.pm circos-0.69-6-new/lib/Circos/Division.pm
|
|
*** circos-0.69-6/lib/Circos/Division.pm 2015-11-17 00:55:58.000000000 +0100
|
|
--- circos-0.69-6-new/lib/Circos/Division.pm 2018-01-12 10:12:21.544769084 +0100
|
|
***************
|
|
*** 37,52 ****
|
|
our @EXPORT = qw();
|
|
|
|
use Carp qw( carp confess croak );
|
|
- use FindBin;
|
|
use GD;
|
|
use Math::Round;
|
|
use List::MoreUtils qw(uniq);
|
|
use Params::Validate qw(:all);
|
|
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
-
|
|
use Circos::Configuration;
|
|
use Circos::Constants;
|
|
use Circos::Debug;
|
|
--- 37,47 ----
|
|
diff -crB circos-0.69-6/lib/Circos/Error.pm circos-0.69-6-new/lib/Circos/Error.pm
|
|
*** circos-0.69-6/lib/Circos/Error.pm 2015-03-17 22:46:36.000000000 +0100
|
|
--- circos-0.69-6-new/lib/Circos/Error.pm 2018-01-12 10:12:32.472970548 +0100
|
|
***************
|
|
*** 44,53 ****
|
|
use Params::Validate;
|
|
use Text::Format;
|
|
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
-
|
|
use Circos::Constants;
|
|
use Circos::Debug;
|
|
use Circos::Utils;
|
|
--- 44,49 ----
|
|
diff -crB circos-0.69-6/lib/Circos/Expression.pm circos-0.69-6-new/lib/Circos/Expression.pm
|
|
*** circos-0.69-6/lib/Circos/Expression.pm 2015-11-30 23:49:36.000000000 +0100
|
|
--- circos-0.69-6-new/lib/Circos/Expression.pm 2018-01-12 10:12:41.953144015 +0100
|
|
***************
|
|
*** 39,55 ****
|
|
|
|
use Carp qw( carp confess croak );
|
|
use Data::Dumper;
|
|
- use FindBin;
|
|
use Params::Validate qw(:all);
|
|
use Math::Round;
|
|
use Math::VecStat qw(average);
|
|
use List::Util qw(min max);
|
|
use Text::Balanced qw(extract_bracketed);
|
|
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
-
|
|
use Circos::Configuration;
|
|
use Circos::Constants;
|
|
use Circos::Debug;
|
|
--- 39,50 ----
|
|
diff -crB circos-0.69-6/lib/Circos/Font.pm circos-0.69-6-new/lib/Circos/Font.pm
|
|
*** circos-0.69-6/lib/Circos/Font.pm 2014-05-12 18:20:19.000000000 +0200
|
|
--- circos-0.69-6-new/lib/Circos/Font.pm 2018-01-12 10:12:51.657320357 +0100
|
|
***************
|
|
*** 45,59 ****
|
|
);
|
|
|
|
use Carp qw( carp confess croak );
|
|
- use FindBin;
|
|
use GD::Image;
|
|
use Font::TTF::Font;
|
|
use Params::Validate qw(:all);
|
|
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
-
|
|
use Circos::Configuration; # qw(%CONF $DIMS fetch_conf);
|
|
use Circos::Constants;
|
|
use Circos::Colors;
|
|
--- 45,54 ----
|
|
diff -crB circos-0.69-6/lib/Circos/Geometry.pm circos-0.69-6-new/lib/Circos/Geometry.pm
|
|
*** circos-0.69-6/lib/Circos/Geometry.pm 2014-05-12 18:20:19.000000000 +0200
|
|
--- circos-0.69-6-new/lib/Circos/Geometry.pm 2018-01-12 10:12:58.961452282 +0100
|
|
***************
|
|
*** 41,54 ****
|
|
);
|
|
|
|
use Carp qw( carp confess croak );
|
|
- use FindBin;
|
|
use GD::Image;
|
|
use Params::Validate qw(:all);
|
|
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
-
|
|
use Circos::Configuration; # qw(%CONF $DIMS fetch_conf);
|
|
use Circos::Constants;
|
|
use Circos::Debug;
|
|
--- 41,49 ----
|
|
diff -crB circos-0.69-6/lib/Circos/Heatmap.pm circos-0.69-6-new/lib/Circos/Heatmap.pm
|
|
*** circos-0.69-6/lib/Circos/Heatmap.pm 2016-03-30 22:08:12.000000000 +0200
|
|
--- circos-0.69-6-new/lib/Circos/Heatmap.pm 2018-01-12 10:13:09.953649538 +0100
|
|
***************
|
|
*** 24,40 ****
|
|
use Carp qw( carp confess croak );
|
|
use Clone;
|
|
use Data::Dumper;
|
|
- use FindBin;
|
|
use GD::Image;
|
|
use Math::VecStat qw(min max);
|
|
use Params::Validate qw(:all);
|
|
use List::MoreUtils qw(uniq);
|
|
use Regexp::Common qw(number);
|
|
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
-
|
|
use Circos::Configuration;
|
|
use Circos::Constants;
|
|
use Circos::Colors;
|
|
--- 24,35 ----
|
|
diff -crB circos-0.69-6/lib/Circos/Ideogram.pm circos-0.69-6-new/lib/Circos/Ideogram.pm
|
|
*** circos-0.69-6/lib/Circos/Ideogram.pm 2015-11-17 01:18:53.000000000 +0100
|
|
--- circos-0.69-6-new/lib/Circos/Ideogram.pm 2018-01-12 10:13:22.045864798 +0100
|
|
***************
|
|
*** 40,46 ****
|
|
|
|
use Carp qw( carp confess croak );
|
|
use Cwd;
|
|
- use FindBin;
|
|
use File::Spec::Functions;
|
|
use Math::Round;
|
|
use Math::VecStat qw(max);
|
|
--- 40,45 ----
|
|
***************
|
|
*** 50,59 ****
|
|
|
|
use POSIX qw(floor ceil);
|
|
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
-
|
|
use Circos::Configuration;
|
|
use Circos::Constants;
|
|
use Circos::Debug;
|
|
--- 49,54 ----
|
|
diff -crB circos-0.69-6/lib/Circos/Image.pm circos-0.69-6-new/lib/Circos/Image.pm
|
|
*** circos-0.69-6/lib/Circos/Image.pm 2014-05-12 18:20:19.000000000 +0200
|
|
--- circos-0.69-6-new/lib/Circos/Image.pm 2018-01-12 10:13:31.094024696 +0100
|
|
***************
|
|
*** 45,58 ****
|
|
);
|
|
|
|
use Carp qw( carp confess croak );
|
|
- use FindBin;
|
|
use GD::Image;
|
|
use Params::Validate qw(:all);
|
|
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
-
|
|
use Circos::Configuration;
|
|
use Circos::Colors;
|
|
use Circos::Constants;
|
|
--- 45,53 ----
|
|
diff -crB circos-0.69-6/lib/Circos/IO.pm circos-0.69-6-new/lib/Circos/IO.pm
|
|
*** circos-0.69-6/lib/Circos/IO.pm 2015-12-03 05:51:11.000000000 +0100
|
|
--- circos-0.69-6-new/lib/Circos/IO.pm 2018-01-12 10:13:41.686210640 +0100
|
|
***************
|
|
*** 39,45 ****
|
|
use Carp qw( carp confess croak );
|
|
use Storable qw(dclone);
|
|
use Cwd;
|
|
- use FindBin;
|
|
use Data::Dumper;
|
|
use File::Spec::Functions;
|
|
use Math::Round;
|
|
--- 39,44 ----
|
|
***************
|
|
*** 49,58 ****
|
|
|
|
use POSIX qw(floor ceil);
|
|
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
-
|
|
use Circos::Constants;
|
|
use Circos::Colors;
|
|
use Circos::Configuration;
|
|
--- 48,53 ----
|
|
diff -crB circos-0.69-6/lib/Circos/Karyotype.pm circos-0.69-6-new/lib/Circos/Karyotype.pm
|
|
*** circos-0.69-6/lib/Circos/Karyotype.pm 2014-09-09 00:15:58.000000000 +0200
|
|
--- circos-0.69-6-new/lib/Circos/Karyotype.pm 2018-01-12 10:13:53.318413330 +0100
|
|
***************
|
|
*** 38,44 ****
|
|
|
|
use Carp qw( carp confess croak );
|
|
use Cwd;
|
|
- use FindBin;
|
|
use Math::Round;
|
|
use Math::VecStat qw(max);
|
|
use Params::Validate qw(:all);
|
|
--- 38,43 ----
|
|
***************
|
|
*** 48,57 ****
|
|
#use Regexp::Common qw(number);
|
|
#use POSIX qw(floor ceil);
|
|
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
-
|
|
use Circos::Configuration;
|
|
use Circos::Constants;
|
|
use Circos::Debug;
|
|
--- 47,52 ----
|
|
diff -crB circos-0.69-6/lib/Circos/PNG.pm circos-0.69-6-new/lib/Circos/PNG.pm
|
|
*** circos-0.69-6/lib/Circos/PNG.pm 2014-09-17 05:33:06.000000000 +0200
|
|
--- circos-0.69-6-new/lib/Circos/PNG.pm 2018-01-12 10:14:31.011059637 +0100
|
|
***************
|
|
*** 37,51 ****
|
|
our @EXPORT = qw();
|
|
|
|
use Carp qw( carp confess croak );
|
|
- use FindBin;
|
|
use GD;
|
|
use Math::VecStat qw(min max);
|
|
use Params::Validate qw(:all);
|
|
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
-
|
|
use Circos::Configuration;
|
|
use Circos::Colors;
|
|
use Circos::Constants;
|
|
--- 37,46 ----
|
|
diff -crB circos-0.69-6/lib/Circos/Rule.pm circos-0.69-6-new/lib/Circos/Rule.pm
|
|
*** circos-0.69-6/lib/Circos/Rule.pm 2014-10-02 01:14:25.000000000 +0200
|
|
--- circos-0.69-6-new/lib/Circos/Rule.pm 2018-01-12 10:14:38.195181067 +0100
|
|
***************
|
|
*** 38,51 ****
|
|
|
|
use Carp qw( carp confess croak );
|
|
use Data::Dumper;
|
|
- use FindBin;
|
|
use GD::Image;
|
|
use Params::Validate qw(:all);
|
|
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
-
|
|
use Circos::Configuration; # qw(%CONF $DIMS);
|
|
use Circos::Constants;
|
|
use Circos::DataPoint;
|
|
--- 38,46 ----
|
|
diff -crB circos-0.69-6/lib/Circos/SVG.pm circos-0.69-6-new/lib/Circos/SVG.pm
|
|
*** circos-0.69-6/lib/Circos/SVG.pm 2015-11-30 23:23:52.000000000 +0100
|
|
--- circos-0.69-6-new/lib/Circos/SVG.pm 2018-01-12 10:14:47.803342631 +0100
|
|
***************
|
|
*** 26,39 ****
|
|
);
|
|
|
|
use Carp qw( carp confess croak );
|
|
- use FindBin;
|
|
use GD::Image;
|
|
use Params::Validate qw(:all);
|
|
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
-
|
|
use Circos::Configuration;
|
|
use Circos::Colors;
|
|
use Circos::Constants;
|
|
--- 26,34 ----
|
|
diff -crB circos-0.69-6/lib/Circos/Text.pm circos-0.69-6-new/lib/Circos/Text.pm
|
|
*** circos-0.69-6/lib/Circos/Text.pm 2014-05-12 18:20:19.000000000 +0200
|
|
--- circos-0.69-6-new/lib/Circos/Text.pm 2018-01-12 10:14:57.083497772 +0100
|
|
***************
|
|
*** 42,55 ****
|
|
);
|
|
|
|
use Carp qw( carp confess croak );
|
|
- use FindBin;
|
|
use GD::Image;
|
|
use Params::Validate qw(:all);
|
|
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
-
|
|
use Circos::Configuration; # qw(%CONF $DIMS);
|
|
use Circos::Constants;
|
|
use Circos::Colors;
|
|
--- 42,50 ----
|
|
diff -crB circos-0.69-6/lib/Circos/Track/Highlight.pm circos-0.69-6-new/lib/Circos/Track/Highlight.pm
|
|
*** circos-0.69-6/lib/Circos/Track/Highlight.pm 2014-10-01 00:43:27.000000000 +0200
|
|
--- circos-0.69-6-new/lib/Circos/Track/Highlight.pm 2018-01-12 10:15:06.795659206 +0100
|
|
***************
|
|
*** 37,50 ****
|
|
our @EXPORT = qw();
|
|
|
|
use Carp qw( carp confess croak );
|
|
- use FindBin;
|
|
use GD::Image;
|
|
use Params::Validate qw(:all);
|
|
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
-
|
|
use Circos::Configuration; # qw(%CONF $DIMS);
|
|
use Circos::Constants;
|
|
#use Circos::Colors;
|
|
--- 37,45 ----
|
|
diff -crB circos-0.69-6/lib/Circos/Track/Link.pm circos-0.69-6-new/lib/Circos/Track/Link.pm
|
|
*** circos-0.69-6/lib/Circos/Track/Link.pm 2014-05-12 18:20:19.000000000 +0200
|
|
--- circos-0.69-6-new/lib/Circos/Track/Link.pm 2018-01-12 10:15:17.387834198 +0100
|
|
***************
|
|
*** 37,50 ****
|
|
our @EXPORT = qw();
|
|
|
|
use Carp qw( carp confess croak );
|
|
- use FindBin;
|
|
use GD::Image;
|
|
use Params::Validate qw(:all);
|
|
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
-
|
|
use Circos::Configuration; # qw(%CONF $DIMS);
|
|
use Circos::Constants;
|
|
#use Circos::Colors;
|
|
--- 37,45 ----
|
|
diff -crB circos-0.69-6/lib/Circos/Track.pm circos-0.69-6-new/lib/Circos/Track.pm
|
|
*** circos-0.69-6/lib/Circos/Track.pm 2014-09-16 05:31:46.000000000 +0200
|
|
--- circos-0.69-6-new/lib/Circos/Track.pm 2018-01-12 10:15:29.628035063 +0100
|
|
***************
|
|
*** 41,56 ****
|
|
|
|
use Carp qw( carp confess croak );
|
|
use Data::Dumper;
|
|
- use FindBin;
|
|
use GD::Image;
|
|
use List::MoreUtils qw(uniq);
|
|
use Math::VecStat qw(min max);
|
|
use Params::Validate qw(:all);
|
|
use Regexp::Common;
|
|
use Statistics::Basic qw(average stddev);
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
|
|
use Circos::Configuration; # qw(%CONF $DIMS);
|
|
use Circos::Constants;
|
|
--- 41,52 ----
|
|
diff -crB circos-0.69-6/lib/Circos/Unit.pm circos-0.69-6-new/lib/Circos/Unit.pm
|
|
*** circos-0.69-6/lib/Circos/Unit.pm 2014-05-12 18:20:19.000000000 +0200
|
|
--- circos-0.69-6-new/lib/Circos/Unit.pm 2018-01-12 10:15:37.892169871 +0100
|
|
***************
|
|
*** 46,60 ****
|
|
);
|
|
|
|
use Carp qw( carp confess croak );
|
|
- use FindBin;
|
|
use Data::Dumper;
|
|
use Params::Validate qw(:all);
|
|
use Regexp::Common qw(number);
|
|
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
-
|
|
use Circos::Configuration qw(%CONF $DIMS);
|
|
use Circos::Constants;
|
|
use Circos::Debug;
|
|
--- 46,55 ----
|
|
diff -crB circos-0.69-6/lib/Circos/URL.pm circos-0.69-6-new/lib/Circos/URL.pm
|
|
*** circos-0.69-6/lib/Circos/URL.pm 2014-05-12 18:20:19.000000000 +0200
|
|
--- circos-0.69-6-new/lib/Circos/URL.pm 2018-01-12 10:15:46.092303006 +0100
|
|
***************
|
|
*** 39,52 ****
|
|
);
|
|
|
|
use Carp qw( carp confess croak );
|
|
- use FindBin;
|
|
use GD;
|
|
use Params::Validate qw(:all);
|
|
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
-
|
|
use Circos::Configuration;
|
|
#use Circos::Colors;
|
|
use Circos::Constants;
|
|
--- 39,47 ----
|
|
diff -crB circos-0.69-6/lib/Circos/Utils.pm circos-0.69-6-new/lib/Circos/Utils.pm
|
|
*** circos-0.69-6/lib/Circos/Utils.pm 2014-10-01 21:36:19.000000000 +0200
|
|
--- circos-0.69-6-new/lib/Circos/Utils.pm 2018-01-12 10:16:11.576712858 +0100
|
|
***************
|
|
*** 105,114 ****
|
|
|
|
use POSIX qw(floor ceil);
|
|
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
-
|
|
use Circos::Constants;
|
|
use Circos::Debug;
|
|
use Circos::Error;
|
|
--- 105,110 ----
|
|
diff -crB circos-0.69-6/lib/Circos.pm circos-0.69-6-new/lib/Circos.pm
|
|
*** circos-0.69-6/lib/Circos.pm 2016-06-25 00:19:27.000000000 +0200
|
|
--- circos-0.69-6-new/lib/Circos.pm 2018-01-12 10:16:35.801097176 +0100
|
|
***************
|
|
*** 49,57 ****
|
|
|
|
use strict;
|
|
use warnings;
|
|
- use lib "$FindBin::RealBin";
|
|
- use lib "$FindBin::RealBin/../lib";
|
|
- use lib "$FindBin::RealBin/lib";
|
|
|
|
BEGIN {
|
|
require Circos::Modules;
|
|
--- 49,54 ----
|