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guix/gnu/packages/patches/combinatorial-blas-awpm.patch

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Install BipartiteMatchings headers for SuperLU_DIST. Removes global variables
and code related to performance measurement that is not useful when used in a
library setting.
--- a/BipartiteMatchings/ApproxWeightPerfectMatching.h
+++ b/BipartiteMatchings/ApproxWeightPerfectMatching.h
@@ -9,7 +9,7 @@
#ifndef ApproxWeightPerfectMatching_h
#define ApproxWeightPerfectMatching_h
-#include "../CombBLAS.h"
+#include "CombBLAS.h"
#include "BPMaximalMatching.h"
#include "BPMaximumMatching.h"
#include <parallel/algorithm>
@@ -39,9 +39,6 @@
std::shared_ptr<CommGrid> commGrid;
};
-double t1Comp, t1Comm, t2Comp, t2Comm, t3Comp, t3Comm, t4Comp, t4Comm, t5Comp, t5Comm, tUpdateMateComp;
-
-
template <class IT, class NT>
std::vector<std::tuple<IT,IT,NT>> ExchangeData(std::vector<std::vector<std::tuple<IT,IT,NT>>> & tempTuples, MPI_Comm World)
{
@@ -391,7 +388,7 @@
-int ThreadBuffLenForBinning(int itemsize, int nbins)
+inline int ThreadBuffLenForBinning(int itemsize, int nbins)
{
// 1MB shared cache (per 2 cores) in KNL
#ifndef L2_CACHE_SIZE
@@ -417,7 +414,6 @@
- double tstart = MPI_Wtime();
MPI_Comm World = param.commGrid->GetWorld();
@@ -528,9 +524,6 @@
}
}
- t1Comp = MPI_Wtime() - tstart;
- tstart = MPI_Wtime();
-
// Step 3: Communicate data
std::vector<int> recvcnt (param.nprocs);
@@ -548,7 +541,6 @@
std::vector< std::tuple<IT,IT,NT> > recvTuples1(totrecv);
MPI_Alltoallv(sendTuples.data(), sendcnt.data(), sdispls.data(), MPI_tuple, recvTuples1.data(), recvcnt.data(), rdispls.data(), MPI_tuple, World);
MPI_Type_free(&MPI_tuple);
- t1Comm = MPI_Wtime() - tstart;
return recvTuples1;
}
@@ -730,9 +722,6 @@
// Step 4: Communicate data
- t2Comp = MPI_Wtime() - tstart;
- tstart = MPI_Wtime();
-
std::vector<int> recvcnt (param.nprocs);
std::vector<int> rdispls (param.nprocs, 0);
@@ -748,7 +737,6 @@
std::vector< std::tuple<IT,IT,IT,NT> > recvTuples1(totrecv);
MPI_Alltoallv(sendTuples.data(), sendcnt.data(), sdispls.data(), MPI_tuple, recvTuples1.data(), recvcnt.data(), rdispls.data(), MPI_tuple, World);
MPI_Type_free(&MPI_tuple);
- t2Comm = MPI_Wtime() - tstart;
return recvTuples1;
}
@@ -836,7 +824,6 @@
param.myrank = myrank;
param.commGrid = commGrid;
- double t1CompAll = 0, t1CommAll = 0, t2CompAll = 0, t2CommAll = 0, t3CompAll = 0, t3CommAll = 0, t4CompAll = 0, t4CommAll = 0, t5CompAll = 0, t5CommAll = 0, tUpdateMateCompAll = 0, tUpdateWeightAll = 0;
// -----------------------------------------------------------
// replicate mate vectors for mateCol2Row
@@ -975,11 +962,7 @@
}
//vector< tuple<IT,IT,IT, NT> >().swap(recvTuples1);
- double t3Comp = MPI_Wtime() - tstart;
- tstart = MPI_Wtime();
recvTuples1 = ExchangeData1(tempTuples1, World);
- double t3Comm = MPI_Wtime() - tstart;
- tstart = MPI_Wtime();
std::vector<std::tuple<IT,IT,IT,IT, NT>> bestTuplesPhase4 (lncol);
// we could have used lnrow in both bestTuplesPhase3 and bestTuplesPhase4
@@ -1041,14 +1024,9 @@
//vector< tuple<IT,IT,IT, NT> >().swap(recvTuples1);
- double t4Comp = MPI_Wtime() - tstart;
- tstart = MPI_Wtime();
std::vector<std::tuple<IT,IT,IT,IT>> recvWinnerTuples = ExchangeData1(winnerTuples, World);
- double t4Comm = MPI_Wtime() - tstart;
- tstart = MPI_Wtime();
-
// at the owner of (mj,j)
std::vector<std::tuple<IT,IT>> rowBcastTuples(recvWinnerTuples.size()); //(mi,mj)
std::vector<std::tuple<IT,IT>> colBcastTuples(recvWinnerTuples.size()); //(j,i)
@@ -1065,15 +1043,10 @@
colBcastTuples[k] = std::make_tuple(j,i);
rowBcastTuples[k] = std::make_tuple(mj,mi);
}
- double t5Comp = MPI_Wtime() - tstart;
- tstart = MPI_Wtime();
std::vector<std::tuple<IT,IT>> updatedR2C = MateBcast(rowBcastTuples, RowWorld);
std::vector<std::tuple<IT,IT>> updatedC2R = MateBcast(colBcastTuples, ColWorld);
- double t5Comm = MPI_Wtime() - tstart;
- tstart = MPI_Wtime();
-
#ifdef THREADED
#pragma omp parallel for
#endif
@@ -1095,13 +1068,9 @@
}
- double tUpdateMateComp = MPI_Wtime() - tstart;
- tstart = MPI_Wtime();
// update weights of matched edges
// we can do better than this since we are doing sparse updates
ReplicateMateWeights(param, dcsc, colptr, RepMateC2R, RepMateWR2C, RepMateWC2R);
- double tUpdateWeight = MPI_Wtime() - tstart;
-
weightPrev = weightCur;
weightCur = MatchingWeight(RepMateWC2R, RowWorld, minw);
@@ -1110,32 +1079,8 @@
//UpdateMatching(mateRow2Col, mateCol2Row, RepMateR2C, RepMateC2R);
//CheckMatching(mateRow2Col,mateCol2Row);
- if(myrank==0)
- {
- std::cout << t1Comp << " " << t1Comm << " "<< t2Comp << " " << t2Comm << " " << t3Comp << " " << t3Comm << " " << t4Comp << " " << t4Comm << " " << t5Comp << " " << t5Comm << " " << tUpdateMateComp << " " << tUpdateWeight << std::endl;
-
- t1CompAll += t1Comp;
- t1CommAll += t1Comm;
- t2CompAll += t2Comp;
- t2CommAll += t2Comm;
- t3CompAll += t3Comp;
- t3CommAll += t3Comm;
- t4CompAll += t4Comp;
- t4CommAll += t4Comm;
- t5CompAll += t5Comp;
- t5CommAll += t5Comm;
- tUpdateMateCompAll += tUpdateMateComp;
- tUpdateWeightAll += tUpdateWeight;
-
- }
}
- if(myrank==0)
- {
- std::cout << "=========== overal timing ==========" << std::endl;
- std::cout << t1CompAll << " " << t1CommAll << " " << t2CompAll << " " << t2CommAll << " " << t3CompAll << " " << t3CommAll << " " << t4CompAll << " " << t4CommAll << " " << t5CompAll << " " << t5CommAll << " " << tUpdateMateCompAll << " " << tUpdateWeightAll << std::endl;
- }
-
// update the distributed mate vectors from replicated mate vectors
UpdateMatching(mateRow2Col, mateCol2Row, RepMateR2C, RepMateC2R);
//weightCur = MatchingWeight(RepMateWC2R, RowWorld);
--- a/BipartiteMatchings/BPMaximalMatching.h
+++ b/BipartiteMatchings/BPMaximalMatching.h
@@ -1,7 +1,7 @@
#ifndef BP_MAXIMAL_MATCHING_H
#define BP_MAXIMAL_MATCHING_H
-#include "../CombBLAS.h"
+#include "CombBLAS.h"
#include <iostream>
#include <functional>
#include <algorithm>
@@ -14,8 +14,6 @@
#define GREEDY 1
#define KARP_SIPSER 2
#define DMD 3
-MTRand GlobalMT(123); // for reproducible result
-double tTotalMaximal;
namespace combblas {
@@ -25,7 +25,7 @@
void MaximalMatching(Par_DCSC_Bool & A, Par_DCSC_Bool & AT, FullyDistVec<IT, IT>& mateRow2Col,
FullyDistVec<IT, IT>& mateCol2Row, FullyDistVec<IT, IT>& degColRecv, int type, bool rand=true)
{
-
+ static MTRand GlobalMT(123); // for reproducible result
typedef VertexTypeML < IT, IT> VertexType;
int nprocs, myrank;
MPI_Comm_size(MPI_COMM_WORLD,&nprocs);
@@ -354,8 +354,6 @@
}
- tTotalMaximal = MPI_Wtime() - tStart;
-
IT cardinality = mateRow2Col.Count([](IT mate){return mate!=-1;});
std::vector<double> totalTimes(timing[0].size(),0);
for(int i=0; i<timing.size(); i++)
--- a/BipartiteMatchings/BPMaximumMatching.h
+++ b/BipartiteMatchings/BPMaximumMatching.h
@@ -1,7 +1,7 @@
#ifndef BP_MAXIMUM_MATCHING_H
#define BP_MAXIMUM_MATCHING_H
-#include "../CombBLAS.h"
+#include "CombBLAS.h"
#include <mpi.h>
#include <sys/time.h>
#include <iostream>
@@ -11,7 +11,6 @@
#include <string>
#include <sstream>
#include "MatchingDefs.h"
-double tTotalMaximum;
namespace combblas {
@@ -231,7 +231,7 @@
void maximumMatching(SpParMat < IT, NT, DER > & A, FullyDistVec<IT, IT>& mateRow2Col,
FullyDistVec<IT, IT>& mateCol2Row, bool prune=true, bool randMM = false, bool maximizeWeight = false)
{
-
+ static MTRand GlobalMT(123); // for reproducible result
typedef VertexTypeMM <IT> VertexType;
int nthreads=1;
@@ -420,8 +420,6 @@
MPI_Win_free(&winLeaves);
- tTotalMaximum = MPI_Wtime() - tstart;
-
//isMaximalmatching(A, mateRow2Col, mateCol2Row, unmatchedRow, unmatchedCol);
//isMatching(mateCol2Row, mateRow2Col); //todo there is a better way to check this
--- a/BipartiteMatchings/MatchingDefs.h
+++ b/BipartiteMatchings/MatchingDefs.h
@@ -9,7 +9,7 @@
#ifndef MatchingDefs_h
#define MatchingDefs_h
-#include "../CombBLAS.h"
+#include "CombBLAS.h"
#include <iostream>
namespace combblas {
--- a/BipartiteMatchings/Utility.h
+++ b/BipartiteMatchings/Utility.h
@@ -1,7 +1,7 @@
#ifndef BP_UTILITY_H
#define BP_UTILITY_H
-#include "../CombBLAS.h"
+#include "CombBLAS.h"
namespace combblas {
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -68,6 +68,7 @@ set_property(TARGET CombBLAS PROPERTY VERSION ${CombBLAS_VERSION})
# installation
install(DIRECTORY include/ DESTINATION include)
install(DIRECTORY psort-1.0/include/ DESTINATION include)
+install(DIRECTORY BipartiteMatchings DESTINATION include FILES_MATCHING PATTERN "*.h")
install(TARGETS CombBLAS EXPORT CombBLASTargets
LIBRARY DESTINATION lib
ARCHIVE DESTINATION lib
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