* gnu/packages/tls.scm (mbedtls-apache): Rename package to "mbedtls". Rename variable to… (mbedtls-lts): …this. (mbedtls-apache): Define as deprecated by mbedtls-lts. (mbedtls-for-hiawatha): Adjust accordingly. * doc/guix.texi: Likewise. * gnu/packages/emulators.scm (dolphin-emu,retroarch)[inputs]: Likewise. * gnu/packages/game-development.scm (godot-lts,godot)[inputs]: Likewise. * gnu/packages/hardware.scm (hueplusplus,openrgb)[inputs]: Likewise. * gnu/packages/haxe.scm (neko,haxe,hashlink)[inputs]: Likewise. * gnu/packages/irc.scm (inspircd)[inputs]: Likewise. * gnu/packages/julia-jll.scm (julia-mbedtls-jll)[arguments]<#:phases>,[inputs]: Likewise. * gnu/packages/julia.scm (julia)[arguments]<#:phases>,[inputs]: Likewise. * gnu/packages/linphone.scm (bctoolbox)[inputs]: Likewise. * gnu/packages/linux.scm (dislocker)[inputs]: Likewise. * gnu/packages/networking.scm (nng)[inputs]: Likewise. * gnu/packages/search.scm (dataparksearch)[inputs]: Likewise. * gnu/packages/video.scm (obs)[inputs]: Likewise. * gnu/packages/web.scm (hiawatha)[arguments]<#:phases>: Likewise. Change-Id: I0c58b3cd0bcf6e44e7b16a69f6d2739aa3c1545b
		
			
				
	
	
		
			560 lines
		
	
	
	
		
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			Scheme
		
	
	
	
	
	
			
		
		
	
	
			560 lines
		
	
	
	
		
			26 KiB
		
	
	
	
		
			Scheme
		
	
	
	
	
	
| ;;; GNU Guix --- Functional package management for GNU
 | |
| ;;; Copyright © 2015, 2016, 2017 Ricardo Wurmus <rekado@elephly.net>
 | |
| ;;; Copyright © 2016, 2020-2022 Efraim Flashner <efraim@flashner.co.il>
 | |
| ;;; Copyright © 2020, 2021 Nicolò Balzarotti <nicolo@nixo.xyz>
 | |
| ;;; Copyright © 2020 Tim Howes <timhowes@lavabit.com>
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| ;;; Copyright © 2020 Tobias Geerinckx-Rice <me@tobias.gr>
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| ;;; Copyright © 2021, 2022 Jean-Baptiste Volatier <jbv@pm.me>
 | |
| ;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com>
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| ;;; Copyright © 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com>
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| ;;; Copyright © 2022 Akira Kyle <akira@akirakyle.com>
 | |
| ;;;
 | |
| ;;; This file is part of GNU Guix.
 | |
| ;;;
 | |
| ;;; GNU Guix is free software; you can redistribute it and/or modify it
 | |
| ;;; under the terms of the GNU General Public License as published by
 | |
| ;;; the Free Software Foundation; either version 3 of the License, or (at
 | |
| ;;; your option) any later version.
 | |
| ;;;
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| ;;; GNU Guix is distributed in the hope that it will be useful, but
 | |
| ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
 | |
| ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | |
| ;;; GNU General Public License for more details.
 | |
| ;;;
 | |
| ;;; You should have received a copy of the GNU General Public License
 | |
| ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
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| 
 | |
| (define-module (gnu packages julia)
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|   #:use-module ((guix licenses) #:prefix license:)
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|   #:use-module (guix packages)
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|   #:use-module (guix download)
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|   #:use-module (guix utils)
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|   #:use-module (guix git-download)
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|   #:use-module (guix build-system gnu)
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|   #:use-module ((guix search-paths) #:select ($SSL_CERT_FILE))
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|   #:use-module (gnu packages)
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|   #:use-module (gnu packages algebra)
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|   #:use-module (gnu packages base)
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|   #:use-module (gnu packages compression)
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|   #:use-module (gnu packages curl)
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|   #:use-module (gnu packages elf)
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|   #:use-module (gnu packages gcc)
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|   #:use-module (gnu packages llvm)
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|   #:use-module (gnu packages libevent)
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|   #:use-module (gnu packages libunwind)
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|   #:use-module (gnu packages maths)
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|   #:use-module (gnu packages multiprecision) ; mpfr
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|   #:use-module (gnu packages pcre)
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|   #:use-module (gnu packages perl)
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|   #:use-module (gnu packages pkg-config)
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|   #:use-module (gnu packages python)
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|   #:use-module (gnu packages python-xyz)
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|   #:use-module (gnu packages textutils)
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|   #:use-module (gnu packages ssh)
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|   #:use-module (gnu packages tls)
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|   #:use-module (gnu packages version-control)
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|   #:use-module (gnu packages web)
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|   #:use-module (gnu packages wget)
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|   #:use-module (ice-9 match))
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| 
 | |
| (define libunwind-julia
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|   ;; The Julia projects requires their patched version.
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|   ;; Get from https://github.com/JuliaLang/julia/tree/master/deps/patches
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|   (package
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|     (inherit libunwind)
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|     (name "libunwind-julia")
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|     (version "1.5.0")
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|     (source
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|      (origin
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|        (method url-fetch)
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|        (uri (string-append "mirror://savannah/libunwind/libunwind-"
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|                            version ".tar.gz"))
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|        (sha256
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|         (base32
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|          "05qhzcg1xag3l5m3c805np6k342gc0f3g087b7g16jidv59pccwh"))
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|        (patches
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|          (list
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|            (julia-patch "libunwind-prefer-extbl"
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|                         "0pf3lsq6zxlmqn86lk4fcj1xwdan9gbxyabrwgxcb59p8jjwsl8r")
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|            (julia-patch "libunwind-static-arm"
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|                         "1jk3bmiw61ypcchqkk1fyg5wh8wpggk574wxyfyaic870zh3lhgq")
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|            (julia-patch "libunwind-cfa-rsp"
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|                         "0qs5b1h5lsr5qakkv6sddgy5ghlxpjrn2jiqcvg7bkczy24klr6j")))))
 | |
|     (arguments
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|      (substitute-keyword-arguments (package-arguments libunwind)
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|        ;; Skip tests on this older and patched version of libunwind.
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|        ((#:tests? _ #t) #f)))
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|     (home-page "https://github.com/JuliaLang/julia/tree/master/deps/")))
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| 
 | |
| (define (julia-patch-url version name)
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|   (string-append "https://raw.githubusercontent.com/JuliaLang/julia/v" version
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|                  "/deps/patches/" name ".patch"))
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| 
 | |
| (define-public (julia-patch name sha)
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|   (let ((version "1.8.2"))
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|     (origin (method url-fetch)
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|             (uri (julia-patch-url version name))
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|             (sha256 (base32 sha))
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|             (file-name name))))
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| 
 | |
| (define-public libwhich
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|   (package
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|     (name "libwhich")
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|     (version "1.1.0")
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|     (source
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|      (origin
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|        (method git-fetch)
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|        (uri (git-reference
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|              (url "https://github.com/vtjnash/libwhich")
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|              ;; fixes linux-vdso.so related tests
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|              (commit "87cffe10080c98e7b5786c5166e420bf1ada1d41")))
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|        (file-name (string-append name "-" version "-checkout"))
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|        (sha256
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|         (base32
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|          "1bpa0fcqpa3ai3hm8mz0p13bf76fsq53wsfcx5qw302zh22108xr"))))
 | |
|     (arguments
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|      `(#:make-flags
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|        (list (string-append "CC=" ,(cc-for-target)))
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|        #:phases
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|        (modify-phases %standard-phases
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|          (delete 'configure)
 | |
|          (add-before 'check 'set-ld-library-path
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|            (lambda* (#:key native-inputs inputs #:allow-other-keys)
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|              (setenv "LD_LIBRARY_PATH"
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|                      (string-append (assoc-ref (or native-inputs inputs) "zlib")
 | |
|                                     "/lib"))))
 | |
|          (replace 'install
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|            (lambda* (#:key outputs #:allow-other-keys)
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|              (let ((out (assoc-ref outputs "out")))
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|                (install-file "libwhich" (string-append out "/bin")))
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|              #t)))))
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|     (native-inputs
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|      ;; used for tests
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|      (list zlib))
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|     (build-system gnu-build-system)
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|     (home-page "https://github.com/vtjnash/libwhich")
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|     (synopsis "Like @code{which}, for dynamic libraries")
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|     (description "@code{libwhich} is like @code{which}, but for dynamic
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| libraries.  It is also a bit like @code{ldd} and @code{otool -L}.")
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|     (license license:expat)))
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| 
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| (define-public julia
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|   (package
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|     (name "julia")
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|     (version "1.8.3")
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|     (source (origin
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|               (method url-fetch)
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|               (uri (string-append
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|                     "https://github.com/JuliaLang/julia/releases/download/v"
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|                     version "/julia-" version ".tar.gz"))
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|               (sha256
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|                (base32
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|                 "0jf8dr5j7y8cjnr65kn38xps5h9m2qvi8g1yd8qgiip5r87ld3ad"))
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|               (patches (search-patches "julia-SOURCE_DATE_EPOCH-mtime.patch"
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|                                        "julia-Use-MPFR-4.2.patch"))))
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|     (build-system gnu-build-system)
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|     (arguments
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|      `(#:test-target "test"
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|        #:modules ((ice-9 match)
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|                   (guix build gnu-build-system)
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|                   (guix build utils))
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| 
 | |
|        ;; The test suite takes many times longer than building and
 | |
|        ;; can easily fail on smaller machines when they run out of memory.
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|        #:tests? ,(not (or (%current-target-system)
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|                           (target-aarch64?)))
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| 
 | |
|        ;; Do not strip binaries to keep support for full backtraces.
 | |
|        ;; See https://github.com/JuliaLang/julia/issues/17831
 | |
|        #:strip-binaries? #f
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| 
 | |
|        ;; The DSOs use $ORIGIN to refer to each other, but (guix build
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|        ;; gremlin) doesn't support it yet, so skip this phase.
 | |
|        #:validate-runpath? #f
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| 
 | |
|        #:phases
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|        (modify-phases %standard-phases
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|          (delete 'configure)
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|          (add-after 'unpack 'prepare-deps
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|            (lambda* (#:key inputs #:allow-other-keys)
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|              ;; needed by libwhich
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|              (setenv "LD_LIBRARY_PATH"
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|                      (string-join (map (lambda (pkg)
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|                                          (string-append (assoc-ref inputs pkg)
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|                                                         "/lib"))
 | |
|                                        '("curl" "dsfmt"
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|                                          "gmp" "lapack"
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|                                          "libssh2" "libnghttp2" "libgit2"
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|                                          "libblastrampoline"
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|                                          "mbedtls" "mpfr"
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|                                          "openblas" "openlibm" "pcre2"
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|                                          "suitesparse" "gfortran:lib"))
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|                                   ":"))))
 | |
|          ;; FIXME: Building the documentation requires Julia packages that
 | |
|          ;; would be downloaded from the Internet.  We should build them in a
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|          ;; separate build phase.
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|          (add-after 'unpack 'disable-documentation
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|            (lambda _
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|              (substitute* "Makefile"
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|                (("(install: .*) \\$\\(BUILDROOT\\)/doc/_build/html/en/index.html" _ line)
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|                 (string-append line "\n"))
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|                (("src ui doc deps")
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|                 "src ui deps"))))
 | |
|          (add-after 'unpack 'activate-gnu-source-for-loader
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|            (lambda _
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|              (substitute* "cli/Makefile"
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|                (("LOADER_CFLAGS =") "LOADER_CFLAGS = -D_GNU_SOURCE"))))
 | |
|          ;; libquadmath is not available on all architectures.
 | |
|          ;; https://github.com/JuliaLang/julia/issues/41613
 | |
|          (add-after 'unpack 'make-libquadmath-optional
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|            (lambda _
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|              (substitute* "base/Makefile"
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|                (("libquadmath,0") "libquadmath,0,ALLOW_FAILURE"))))
 | |
|          (add-before 'check 'set-home
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|            ;; Some tests require a home directory to be set.
 | |
|            (lambda _ (setenv "HOME" "/tmp")))
 | |
|          (add-before 'build 'fix-include-and-link-paths
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|            (lambda* (#:key inputs #:allow-other-keys)
 | |
|              ;; The REPL must be linked with libuv.
 | |
|              (substitute* "cli/Makefile"
 | |
|                (("JLDFLAGS \\+= ")
 | |
|                 (string-append "JLDFLAGS += "
 | |
|                                (assoc-ref inputs "libuv")
 | |
|                                "/lib/libuv.so ")))))
 | |
|          (add-before 'build 'replace-default-shell
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|            (lambda* (#:key inputs #:allow-other-keys)
 | |
|              (substitute* "base/client.jl"
 | |
|                (("/bin/sh") (search-input-file inputs "/bin/sh")))))
 | |
|          (add-before 'build 'shared-objects-paths
 | |
|            (lambda* (#:key inputs #:allow-other-keys)
 | |
|              (let ((jlpath
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|                     (lambda (pkgname)
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|                       (string-append
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|                        "stdlib/" pkgname "_jll/src/" pkgname "_jll.jl")))
 | |
|                    (from
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|                     (lambda (libname)
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|                       (string-append "const " libname " = .*\\.so")))
 | |
|                    (to
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|                     (lambda* (pkg libname #:optional libname_jl)
 | |
|                       (string-append
 | |
|                        "const " (or libname_jl libname)  " = \""
 | |
|                        (assoc-ref inputs pkg) "/lib/" libname ".so"))))
 | |
|                (substitute* (jlpath "CompilerSupportLibraries")
 | |
|                  (((from "libgfortran"))
 | |
|                   (string-append "const libgfortran = string(\""
 | |
|                                  (search-input-file inputs "/lib/libgfortran.so"))))
 | |
|                (substitute* (jlpath "dSFMT")
 | |
|                  (((from "libdSFMT")) (to "dsfmt" "libdSFMT")))
 | |
|                (substitute* (jlpath "GMP")
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|                  (((from "libgmp")) (to "gmp" "libgmp"))
 | |
|                  (((from "libgmpxx")) (to "gmp" "libgmpxx")))
 | |
|                (substitute* (jlpath "libLLVM")
 | |
|                  (((from "libLLVM")) (to "llvm" "libLLVM")))
 | |
|                (substitute* (jlpath "LibCURL")
 | |
|                  (((from "libcurl")) (to "curl" "libcurl")))
 | |
|                (substitute* (jlpath "LibGit2")
 | |
|                  (((from "libgit2")) (to "libgit2" "libgit2")))
 | |
|                (substitute* (jlpath "LibSSH2")
 | |
|                  (((from "libssh2")) (to "libssh2" "libssh2")))
 | |
|                (substitute* (jlpath "LibUV")
 | |
|                  (((from "libuv")) (to "libuv" "libuv")))
 | |
|                (substitute* (jlpath "LibUnwind")
 | |
|                  (((from "libunwind")) (to "libunwind" "libunwind")))
 | |
|                (substitute* (jlpath "MPFR")
 | |
|                  (((from "libmpfr")) (to "mpfr" "libmpfr")))
 | |
|                (substitute* (jlpath "MbedTLS")
 | |
|                  (((from "libmbedcrypto")) (to "mbedtls" "libmbedcrypto"))
 | |
|                  (((from "libmbedtls")) (to "mbedtls" "libmbedtls"))
 | |
|                  (((from "libmbedx509")) (to "mbedtls" "libmbedx509")))
 | |
|                (substitute* (jlpath "nghttp2")
 | |
|                  (((from "libnghttp2")) (to "libnghttp2" "libnghttp2")))
 | |
|                (substitute* (jlpath "OpenBLAS")
 | |
|                  (((from "libopenblas"))
 | |
|                   ,@(if (target-x86-64?)
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|                       `((to "openblas" "libopenblas64_" "libopenblas"))
 | |
|                       `((to "openblas" "libopenblas")))))
 | |
|                (substitute* (jlpath "OpenLibm")
 | |
|                  (((from "libopenlibm")) (to "openlibm" "libopenlibm")))
 | |
|                (substitute* (jlpath "PCRE2")
 | |
|                  (((from "libpcre2_8")) (to "pcre2" "libpcre2-8" "libpcre2_8")))
 | |
|                (substitute* (jlpath "SuiteSparse")
 | |
|                  (((from "libamd")) (to "suitesparse" "libamd"))
 | |
|                  (((from "libbtf")) (to "suitesparse" "libbtf"))
 | |
|                  (((from "libcamd")) (to "suitesparse" "libcamd"))
 | |
|                  (((from "libccolamd")) (to "suitesparse" "libccolamd"))
 | |
|                  (((from "libcholmod")) (to "suitesparse" "libcholmod"))
 | |
|                  (((from "libcolamd")) (to "suitesparse" "libcolamd"))
 | |
|                  (((from "libklu")) (to "suitesparse" "libklu"))
 | |
|                  (((from "libldl")) (to "suitesparse" "libldl"))
 | |
|                  (((from "librbio")) (to "suitesparse" "librbio"))
 | |
|                  (((from "libspqr")) (to "suitesparse" "libspqr"))
 | |
|                  (((from "libsuitesparse")) (to "suitesparse" "libsuitesparse"))
 | |
|                  (((from "libsuitesparseconfig"))
 | |
|                   (to "suitesparse" "libsuitesparseconfig"))
 | |
|                  (((from "libumfpack")) (to "suitesparse" "libumfpack")))
 | |
|                (substitute* (jlpath "Zlib")
 | |
|                  (((from "libz")) (to "zlib" "libz")))
 | |
|                (substitute* (jlpath "libblastrampoline")
 | |
|                  (("libblastrampoline\\.so")
 | |
|                   (search-input-file inputs "/lib/libblastrampoline.so"))))))
 | |
|          (add-before 'build 'use-ssl-cert-file
 | |
|            (lambda _
 | |
|              ;; We must adapt MozillaCACerts to use SSL_CERT_FILE.
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|              (substitute* "stdlib/MozillaCACerts_jll/src/MozillaCACerts_jll.jl"
 | |
|                (("global cacert = .*")
 | |
|                 (string-append
 | |
|                   "global cacert = get(ENV, \"SSL_CERT_FILE\","
 | |
|                   ;; our fallback location.
 | |
|                   "\"/etc/ssl/certs/ca-certificates.crt\")\n")))))
 | |
|          (add-after 'unpack 'enable-parallel-tests
 | |
|            (lambda* (#:key parallel-tests? #:allow-other-keys)
 | |
|              (when parallel-tests?
 | |
|                (setenv "JULIA_TEST_USE_MULTIPLE_WORKERS" "true"))))
 | |
|          (add-after 'unpack 'adjust-test-suite
 | |
|            (lambda* (#:key inputs #:allow-other-keys)
 | |
|              (substitute* "test/spawn.jl"
 | |
|                (("shcmd = `sh`") (string-append "shcmd = `" (which "sh") "`")))
 | |
|              ;; Some tests only check to see if the input is the correct version.
 | |
|              (substitute* "stdlib/PCRE2_jll/test/runtests.jl"
 | |
|                (("10.40.0") ,(package-version (this-package-input "pcre2"))))
 | |
|              (substitute* "stdlib/MbedTLS_jll/test/runtests.jl"
 | |
|                (("2.28.0") ,(package-version (this-package-input "mbedtls"))))
 | |
|              (substitute* "stdlib/MPFR_jll/test/runtests.jl"
 | |
|                (("4.1.0") ,(package-version (this-package-input "mpfr"))))
 | |
|              (substitute* "stdlib/GMP_jll/test/runtests.jl"
 | |
|                (("6.2.1") ,(package-version (this-package-input "gmp"))))
 | |
|              (substitute* "stdlib/LibGit2_jll/test/runtests.jl"
 | |
|                (("1.3.0") ,(package-version (this-package-input "libgit2"))))
 | |
|              (substitute* "stdlib/nghttp2_jll/test/runtests.jl"
 | |
|                (("1.48.0") ,(package-version (this-package-input "libnghttp2"))))
 | |
|              (substitute* "stdlib/Zlib_jll/test/runtests.jl"
 | |
|                (("1.2.12") ,(package-version (this-package-input "zlib"))))
 | |
|              (substitute* "stdlib/SuiteSparse_jll/test/runtests.jl"
 | |
|                (("5010") ,(string-replace-substring
 | |
|                             (version-major+minor
 | |
|                               (package-version
 | |
|                                 (this-package-input "suitesparse"))) "." "0")))))
 | |
|          (add-before 'check 'disable-broken-tests
 | |
|            (lambda _
 | |
|              ;; disabling REPL tests because they require a stdin
 | |
|              ;; There are some read-only precompile issues in the 1.6 series.
 | |
|              ;; https://github.com/JuliaLang/julia/pull/41614
 | |
|              ;; https://github.com/JuliaLang/julia/issues/41156
 | |
|              (substitute* "test/choosetests.jl"
 | |
|                (("\"cmdlineargs\",") "")
 | |
|                (("\"precompile\",") ""))
 | |
|              ;; Dates/io tests fail on master when networking is unavailable
 | |
|              ;; https://github.com/JuliaLang/julia/issues/34655
 | |
|              (substitute* "stdlib/Dates/test/io.jl"
 | |
|                (("using Dates") "import Dates
 | |
| using Dates: @dateformat_str, Date, DateTime, DateFormat, Time"))
 | |
|              ;; julia embeds a certificate, we are not doing that
 | |
|              (substitute* "stdlib/MozillaCACerts_jll/test/runtests.jl"
 | |
|                (("@test isfile\\(MozillaCACerts_jll.cacert\\)")
 | |
|                 "@test_broken isfile(MozillaCACerts_jll.cacert)"))
 | |
|              ;; since certificate is not present some tests are failing in network option
 | |
|              (substitute* "usr/share/julia/stdlib/v1.8/NetworkOptions/test/runtests.jl"
 | |
|                (("@test isfile\\(bundled_ca_roots\\(\\)\\)")
 | |
|                 "@test_broken isfile(bundled_ca_roots())")
 | |
|                (("@test ispath\\(ca_roots_path\\(\\)\\)")
 | |
|                 "@test_broken ispath(ca_roots_path())")
 | |
|                (("@test ca_roots_path\\(\\) \\!= bundled_ca_roots\\(\\)")
 | |
|                 "@test_broken ca_roots_path() != bundled_ca_roots()"))
 | |
|              ;; WARNING: failed to select UTF-8 encoding, using ASCII
 | |
|              ;; Using 'setlocale' doesn't affect the test failures.
 | |
|              ;(setlocale LC_ALL "en_US.utf8")
 | |
|              ;(setenv "LC_ALL" "en_US.utf8")
 | |
|              (substitute* "test/cmdlineargs.jl"
 | |
|                (("test v\\[3") "test_broken v[3")
 | |
|                (("test isempty\\(v\\[3") "test_broken isempty(v[3"))
 | |
|              ;; These test(s) randomly fails because they depend on CPU.
 | |
|              (substitute* "test/math.jl"
 | |
|                ;; @test_broken cannot be used because if the test randomly
 | |
|                ;; passes, then it also raises an error.
 | |
|                (("@test isinf\\(log1p\\(-one\\(T\\)\\)\\)")
 | |
|                 " "))
 | |
| 
 | |
|              ;; These are new test failures for 1.8:
 | |
|              ;; This test passes on some architectures and fails on others.
 | |
|              (substitute* "stdlib/LinearAlgebra/test/lu.jl"
 | |
|                (("@test String") "@test_skip String"))
 | |
| 
 | |
|              (substitute* "stdlib/InteractiveUtils/test/runtests.jl"
 | |
|                (("@test !occursin\\(\"Environment")
 | |
|                 "@test_broken !occursin(\"Environment")
 | |
|                (("@test  occursin\\(\"Environment")
 | |
|                 "@test_broken  occursin(\"Environment"))
 | |
|              (substitute* "usr/share/julia/stdlib/v1.8/Statistics/test/runtests.jl"
 | |
|                (("@test cov\\(A") "@test_skip cov(A")
 | |
|                (("@test isfinite") "@test_skip isfinite"))
 | |
|              ;; LoadError: SuiteSparse threads test failed with nthreads == 4
 | |
|              (substitute* "usr/share/julia/stdlib/v1.8/SuiteSparse/test/runtests.jl"
 | |
|                (("Base\\.USE_GPL_LIBS") "false"))
 | |
|              ;; Got exception outside of a @test
 | |
|              ;; LinearAlgebra.LAPACKException(16)
 | |
|              ;; eliminate all the test bits.
 | |
|              (substitute* "stdlib/LinearAlgebra/test/schur.jl"
 | |
|                (("f = schur\\(A, B\\)") "f = schur(A, A)")
 | |
|                (("@test f\\.Q\\*f\\.S\\*f\\.Z'.*") "\n")
 | |
|                (("@test f\\.Q\\*f\\.T\\*f\\.Z'.*") "\n"))
 | |
|              (substitute* "test/threads.jl"
 | |
|                (("@test success") "@test_broken success"))))
 | |
|          ;; Doesn't this just mean they weren't linked correctly?
 | |
|          (add-after 'install 'symlink-missing-libraries
 | |
|            (lambda* (#:key inputs outputs #:allow-other-keys)
 | |
|              (let* ((out (assoc-ref outputs "out"))
 | |
|                     (link
 | |
|                       (lambda (pkgname pred)
 | |
|                         (map (lambda (file)
 | |
|                                (unless (file-exists?
 | |
|                                          (string-append out "/lib/julia/"
 | |
|                                                         (basename file)))
 | |
|                                  (symlink file (string-append out "/lib/julia/"
 | |
|                                                               (basename file)))))
 | |
|                         (find-files (string-append (assoc-ref inputs pkgname)
 | |
|                                                    "/lib") pred)))))
 | |
|                (link "libunwind" "libunwind\\.so")
 | |
|                (link "llvm" "libLLVM-13jl\\.so")
 | |
|                (link "utf8proc" "libutf8proc\\.so")
 | |
|                (link "zlib" "libz\\.so"))))
 | |
|          (add-after 'install 'make-wrapper
 | |
|            (lambda* (#:key inputs outputs #:allow-other-keys)
 | |
|              (let* ((out (assoc-ref outputs "out"))
 | |
|                     (bin (string-append out "/bin"))
 | |
|                     (program "julia"))
 | |
|                (with-directory-excursion bin
 | |
|                  (wrap-program program
 | |
|                    `("JULIA_LOAD_PATH" ":" prefix
 | |
|                      ("" "$JULIA_LOAD_PATH"))
 | |
|                    `("JULIA_DEPOT_PATH" ":" prefix
 | |
|                      ("" "$JULIA_DEPOT_PATH"))))))))
 | |
|        #:make-flags
 | |
|        (list
 | |
|         "VERBOSE=1" ;; more helpful logging of what make is doing
 | |
|         (string-append "prefix=" (assoc-ref %outputs "out"))
 | |
| 
 | |
|          ;; Passing the MARCH or JULIA_CPU_TARGET flag is necessary to build
 | |
|          ;; binary substitutes for the supported architectures.  See also
 | |
|          ;; https://docs.julialang.org/en/v1/devdocs/sysimg/#Specifying-multiple-system-image-targets
 | |
|          ,(match (or (%current-target-system)
 | |
|                      (%current-system))
 | |
|                  ("x86_64-linux"
 | |
|                   ;; These are the flags that upstream uses for their binaries.
 | |
|                   "JULIA_CPU_TARGET=generic;generic,-cx16,clone_all;sandybridge,-xsaveopt,clone_all;haswell,-rdrnd,base(1)")
 | |
|                  ("i686-linux" "MARCH=pentium4")
 | |
|                  ("armhf-linux" "JULIA_CPU_TARGET=armv7-a,neon")
 | |
|                  ("powerpc64le-linux" "JULIA_CPU_TARGET=pwr8")
 | |
|                  ;; Prevent errors when querying this package on unsupported
 | |
|                  ;; platforms, e.g. when running "guix package --search="
 | |
|                  ;; and also of targeting the builder's architecture.
 | |
|                  (_ "JULIA_CPU_TARGET=generic"))
 | |
| 
 | |
|          "CONFIG_SHELL=bash -x"     ; needed to build bundled libraries
 | |
|          "USE_BINARYBUILDER=0"
 | |
|          ;; list (and order!) of "USE_SYSTEM_*" is here:
 | |
|          ;; https://github.com/JuliaLang/julia/blob/v1.8.2/Make.inc
 | |
|          "USE_SYSTEM_CSL=1"
 | |
|          "USE_SYSTEM_LLVM=1"
 | |
|          "USE_SYSTEM_LIBUNWIND=1"
 | |
|          "USE_SYSTEM_PCRE=1"
 | |
|          "USE_SYSTEM_OPENLIBM=1"
 | |
|          "USE_SYSTEM_DSFMT=1"
 | |
|          "USE_SYSTEM_LIBBLASTRAMPOLINE=1"
 | |
|          "USE_SYSTEM_BLAS=1"
 | |
|          "USE_SYSTEM_LAPACK=1"
 | |
|          "USE_SYSTEM_GMP=1"
 | |
|          "USE_SYSTEM_MPFR=1"
 | |
|          "USE_SYSTEM_LIBSUITESPARSE=1"
 | |
|          "USE_SYSTEM_LIBUV=1"
 | |
|          "USE_SYSTEM_UTF8PROC=1"
 | |
|          "USE_SYSTEM_MBEDTLS=1"
 | |
|          "USE_SYSTEM_LIBSSH2=1"
 | |
|          "USE_SYSTEM_NGHTTP2=1"
 | |
|          "USE_SYSTEM_CURL=1"
 | |
|          "USE_SYSTEM_LIBGIT2=1"
 | |
|          "USE_SYSTEM_PATCHELF=1"
 | |
|          "USE_SYSTEM_LIBWHICH=1"
 | |
|          "USE_SYSTEM_ZLIB=1"
 | |
|          "USE_SYSTEM_P7ZIP=1"
 | |
| 
 | |
|          "USE_LLVM_SHLIB=1"
 | |
| 
 | |
|          "NO_GIT=1"             ; build from release tarball.
 | |
|          "USE_GPL_LIBS=1"       ; proudly
 | |
| 
 | |
|          ,@(if (target-x86-64?)
 | |
|              `("USE_BLAS64=1"
 | |
|                "LIBBLAS=-lopenblas64_"
 | |
|                "LIBBLASNAME=libopenblas64_")
 | |
|              `("USE_BLAS64=0"
 | |
|                "LIBBLAS=-lopenblas"
 | |
|                "LIBBLASNAME=libopenblas"))
 | |
| 
 | |
|          (string-append "UTF8PROC_INC="
 | |
|                         (assoc-ref %build-inputs "utf8proc")
 | |
|                         "/include")
 | |
|          ;; Make.inc expects a static library for libuv.
 | |
|          (string-append "LIBUV="
 | |
|                         (assoc-ref %build-inputs "libuv")
 | |
|                         "/lib/libuv.a")
 | |
|          (string-append "LIBUV_INC="
 | |
|                         (assoc-ref %build-inputs "libuv")
 | |
|                         "/include"))))
 | |
|     (inputs
 | |
|      `(("coreutils" ,coreutils) ; for bindings to "mkdir" and the like
 | |
|        ("curl" ,curl-ssh)
 | |
|        ("gfortran" ,gfortran)
 | |
|        ;; required for libgcc_s.so
 | |
|        ("gfortran:lib" ,gfortran "lib")
 | |
|        ("gmp" ,gmp)
 | |
|        ("lapack" ,lapack)
 | |
|        ("libblastrampoline" ,libblastrampoline)
 | |
|        ("libgit2" ,libgit2-1.3)
 | |
|        ("libnghttp2" ,nghttp2 "lib")
 | |
|        ("libssh2" ,libssh2)
 | |
|        ("libunwind" ,libunwind-julia)
 | |
|        ("libuv" ,libuv-julia)
 | |
|        ("llvm" ,llvm-julia)
 | |
|        ("mbedtls" ,mbedtls-lts)
 | |
|        ("mpfr" ,mpfr)
 | |
|        ,@(if (target-x86-64?)
 | |
|              `(("openblas" ,openblas-ilp64))
 | |
|              `(("openblas" ,openblas)))
 | |
|        ("openlibm" ,openlibm)
 | |
|        ("p7zip" ,p7zip)
 | |
|        ("pcre2" ,pcre2)
 | |
|        ("suitesparse" ,suitesparse)
 | |
|        ("utf8proc" ,utf8proc-2.7.0)
 | |
|        ("wget" ,wget)
 | |
|        ("which" ,which)
 | |
|        ("zlib" ,zlib)
 | |
|        ;; Find dependencies versions here:
 | |
|        ;; https://raw.githubusercontent.com/JuliaLang/julia/v1.6.0/deps/Versions.make
 | |
|        ("dsfmt" ,dsfmt)
 | |
|        ("libwhich" ,libwhich)))
 | |
|     (native-inputs
 | |
|      `(("openssl" ,openssl)
 | |
|        ("perl" ,perl)
 | |
|        ("patchelf" ,patchelf)
 | |
|        ("pkg-config" ,pkg-config)
 | |
|        ("python" ,python)))
 | |
|     (native-search-paths
 | |
|       (list (search-path-specification
 | |
|               (variable "JULIA_LOAD_PATH")
 | |
|               (files (list "share/julia/loadpath/")))
 | |
|             (search-path-specification
 | |
|               (variable "JULIA_DEPOT_PATH")
 | |
|               (files (list "share/julia/")))
 | |
|             $SSL_CERT_FILE))
 | |
|     ;; Julia only officially supports some of our platforms:
 | |
|     ;; https://julialang.org/downloads/#supported_platforms
 | |
|     (supported-systems '("i686-linux" "x86_64-linux" "aarch64-linux"))
 | |
|     (home-page "https://julialang.org/")
 | |
|     (synopsis "High-performance dynamic language for technical computing")
 | |
|     (description
 | |
|      "Julia is a high-level, high-performance dynamic programming language for
 | |
| technical computing, with syntax that is familiar to users of other technical
 | |
| computing environments.  It provides a sophisticated compiler, distributed
 | |
| parallel execution, numerical accuracy, and an extensive mathematical function
 | |
| library.")
 | |
|     (license license:expat)))
 |