483 lines
21 KiB
Scheme
483 lines
21 KiB
Scheme
;;; GNU Guix --- Functional package management for GNU
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;;; Copyright © 2014 John Darrington <jmd@gnu.org>
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;;; Copyright © 2014, 2015, 2018 Mark H Weaver <mhw@netris.org>
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;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
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;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org>
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;;; Copyright © 2015, 2019, 2020 Ludovic Courtès <ludo@gnu.org>
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;;; Copyright © 2017 Thomas Danckaert <post@thomasdanckaert.be>
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;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
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;;; Copyright © 2018 Arun Isaac <arunisaac@systemreboot.net>
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;;; Copyright © 2018, 2019, 2021 Ricardo Wurmus <rekado@elephly.net>
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;;; Copyright © 2018 Maxim Cournoyer <maxim.cournoyer@gmail.com>
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;;; Copyright © 2018, 2020 Efraim Flashner <efraim@flashner.co.il>
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;;; Copyright © 2019 Mathieu Othacehe <m.othacehe@gmail.com>
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;;; Copyright © 2019, 2020 Giacomo Leidi <goodoldpaul@autistici.org>
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;;; Copyright © 2020 Marius Bakke <mbakke@fastmail.com>
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;;; Copyright © 2020 Jonathan Brielmaier <jonathan.brielmaier@web.de>
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;;; Copyright © 2021 Franck Pérignon <franck.perignon@univ-grenoble-alpes.fr>
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;;; Copyright © 2021 Greg Hogan <code@greghogan.com>
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;;;
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;;; This file is part of GNU Guix.
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;;;
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;;; GNU Guix is free software; you can redistribute it and/or modify it
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;;; under the terms of the GNU General Public License as published by
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;;; the Free Software Foundation; either version 3 of the License, or (at
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;;; your option) any later version.
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;;;
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;;; GNU Guix is distributed in the hope that it will be useful, but
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;;; WITHOUT ANY WARRANTY; without even the implied warranty of
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;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;;; GNU General Public License for more details.
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;;;
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;;; You should have received a copy of the GNU General Public License
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;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
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(define-module (gnu packages boost)
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#:use-module ((guix licenses) #:prefix license:)
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#:use-module (guix utils)
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#:use-module (guix packages)
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#:use-module (guix download)
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#:use-module (guix git-download)
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#:use-module (guix build-system gnu)
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#:use-module (guix build-system trivial)
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#:use-module (gnu packages)
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#:use-module (gnu packages compression)
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#:use-module (gnu packages hurd)
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#:use-module (gnu packages icu4c)
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#:use-module (gnu packages llvm)
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#:use-module (gnu packages perl)
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#:use-module (gnu packages python)
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#:use-module (gnu packages shells)
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#:use-module (gnu packages mpi)
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#:use-module (srfi srfi-1))
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(define (version-with-underscores version)
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(string-map (lambda (x) (if (eq? x #\.) #\_ x)) version))
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(define (boost-patch name version hash)
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(origin
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(method url-fetch)
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(uri (string-append "https://www.boost.org/patches/"
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(version-with-underscores version) "/" name))
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(file-name (string-append "boost-" name))
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(sha256 (base32 hash))))
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(define-public boost
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(package
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(name "boost")
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(version "1.72.0")
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(source (origin
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(method url-fetch)
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(uri (string-append "https://boostorg.jfrog.io/artifactory/main/release/"
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version "/source/boost_"
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(version-with-underscores version) ".tar.bz2"))
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(patches
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(list (boost-patch
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;; 1.72.0 was released with a faulty coroutine submodule:
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;; <https://github.com/boostorg/coroutine/issues/46>.
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"0001-revert-cease-dependence-on-range.patch" version
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"1zcqxzh56m1s635wqwk15j3zcs2gmjvjy2f0hid7i78s4pgm0yfs")))
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(sha256
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(base32
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"08h7cv61fd0lzb4z50xanfqn0pdgvizjrpd1kcdgj725pisb5jar"))))
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(build-system gnu-build-system)
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(inputs `(("icu4c" ,icu4c)
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("zlib" ,zlib)))
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(native-inputs
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`(("perl" ,perl)
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,@(if (%current-target-system)
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'()
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`(("python" ,python-wrapper)))
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("tcsh" ,tcsh)))
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(arguments
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`(#:imported-modules ((guix build python-build-system)
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,@%gnu-build-system-modules)
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#:modules (((guix build python-build-system) #:select (python-version))
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,@%gnu-build-system-modules)
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#:tests? #f
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#:make-flags
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(list "threading=multi" "link=shared"
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;; Set the RUNPATH to $libdir so that the libs find each other.
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(string-append "linkflags=-Wl,-rpath="
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(assoc-ref %outputs "out") "/lib")
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,@(if (%current-target-system)
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`("--user-config=user-config.jam"
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;; Python is not supported when cross-compiling.
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"--without-python"
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"binary-format=elf"
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"target-os=linux"
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,@(cond
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((string-prefix? "arm" (%current-target-system))
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'("abi=aapcs"
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"address-model=32"
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"architecture=arm"))
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((string-prefix? "aarch64" (%current-target-system))
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'("abi=aapcs"
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"address-model=64"
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"architecture=arm"))
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(else '())))
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'()))
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#:phases
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(modify-phases %standard-phases
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(delete 'bootstrap)
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(replace 'configure
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(lambda* (#:key inputs outputs #:allow-other-keys)
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(let ((icu (assoc-ref inputs "icu4c"))
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(python (assoc-ref inputs "python"))
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(out (assoc-ref outputs "out")))
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(substitute* '("libs/config/configure"
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"libs/spirit/classic/phoenix/test/runtest.sh"
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"tools/build/src/engine/execunix.cpp"
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"tools/build/src/engine/Jambase")
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(("/bin/sh") (which "sh")))
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(setenv "SHELL" (which "sh"))
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(setenv "CONFIG_SHELL" (which "sh"))
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,@(if (%current-target-system)
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`((call-with-output-file "user-config.jam"
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(lambda (port)
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(format port
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"using gcc : cross : ~a-c++ ;"
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,(%current-target-system)))))
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'())
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;; Change an #ifdef __MACH__ that really targets macOS.
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;; TODO: Inline this on the next rebuild cycle.
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,@(if (hurd-target?)
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'((substitute* "boost/test/utils/timer.hpp"
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(("defined\\(__MACH__\\)")
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"(defined __MACH__ && !defined __GNU__)"))
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#t)
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'())
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(invoke "./bootstrap.sh"
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(string-append "--prefix=" out)
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;; Auto-detection looks for ICU only in traditional
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;; install locations.
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(string-append "--with-icu=" icu)
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;; Ditto for Python.
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,@(if (%current-target-system)
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'()
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`((string-append "--with-python-root=" python)
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(string-append "--with-python=" python "/bin/python")
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(string-append "--with-python-version="
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(python-version python))))
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"--with-toolset=gcc"))))
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(replace 'build
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(lambda* (#:key make-flags #:allow-other-keys)
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(apply invoke "./b2"
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(format #f "-j~a" (parallel-job-count))
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make-flags)))
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(replace 'install
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(lambda* (#:key make-flags #:allow-other-keys)
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(apply invoke "./b2" "install" make-flags)))
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,@(if (%current-target-system)
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'()
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'((add-after 'install 'provide-libboost_python
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(lambda* (#:key inputs outputs #:allow-other-keys)
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(let* ((out (assoc-ref outputs "out"))
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(python-version (python-version
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(assoc-ref inputs "python")))
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(libboost_pythonNN.so
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(string-append "libboost_python"
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(string-join (string-split
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python-version #\.)
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"")
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".so")))
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(with-directory-excursion (string-append out "/lib")
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(symlink libboost_pythonNN.so "libboost_python.so")
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;; Some packages only look for the major version.
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(symlink libboost_pythonNN.so
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(string-append "libboost_python"
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(string-take python-version 1)
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".so")))
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#t))))))))
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(home-page "https://www.boost.org")
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(synopsis "Peer-reviewed portable C++ source libraries")
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(description
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"A collection of libraries intended to be widely useful, and usable
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across a broad spectrum of applications.")
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(license (license:x11-style "https://www.boost.org/LICENSE_1_0.txt"
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"Some components have other similar licences."))))
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;; Sadly, this is needed for irods. It won't link with 1.69 or later.
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(define-public boost-for-irods
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(package
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(inherit boost)
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(name "boost-for-irods")
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(version "1.68.0")
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(source (origin
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(method url-fetch)
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(uri (string-append
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"mirror://sourceforge/boost/boost/" version "/boost_"
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(string-map (lambda (x) (if (eq? x #\.) #\_ x)) version)
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".tar.bz2"))
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(sha256
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(base32
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"1dyqsr9yb01y0nnjdq9b8q5s2kvhxbayk34832k5cpzn7jy30qbz"))))
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(build-system gnu-build-system)
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(properties `((hidden? . #true)))
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(inputs
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`(("icu4c" ,icu4c)
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("libcxx" ,libcxx+libcxxabi-6)
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("libcxxabi" ,libcxxabi-6)
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("zlib" ,zlib)))
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(native-inputs
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`(("clang" ,clang-6)
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("perl" ,perl)
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("tcsh" ,tcsh)))
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(arguments
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`(#:tests? #f
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#:make-flags
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(list "threading=multi" "link=shared"
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"cxxflags=-stdlib=libc++"
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"--without-python"
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;; Set the RUNPATH to $libdir so that the libs find each other.
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(string-append "linkflags=-stdlib=libc++ -Wl,-rpath="
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(assoc-ref %outputs "out") "/lib"))
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#:phases
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(modify-phases %standard-phases
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(delete 'bootstrap)
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(add-after 'set-paths 'adjust-CPLUS_INCLUDE_PATH
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(lambda* (#:key native-inputs inputs #:allow-other-keys)
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(let ((gcc (assoc-ref (or native-inputs inputs) "gcc")))
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(setenv "CPLUS_INCLUDE_PATH"
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(string-join
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(cons (string-append (assoc-ref inputs "libcxx")
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"/include/c++/v1")
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;; Hide GCC's C++ headers so that they do not interfere with
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;; the Clang headers.
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(delete (string-append gcc "/include/c++")
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(string-split (getenv "CPLUS_INCLUDE_PATH")
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#\:)))
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":"))
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(format #true
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"environment variable `CPLUS_INCLUDE_PATH' changed to ~a~%"
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(getenv "CPLUS_INCLUDE_PATH")))))
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(replace 'configure
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(lambda* (#:key inputs outputs #:allow-other-keys)
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(let ((icu (assoc-ref inputs "icu4c"))
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(out (assoc-ref outputs "out"))
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(sh (string-append (assoc-ref inputs "bash") "/bin/sh")))
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(substitute* '("libs/config/configure"
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"libs/spirit/classic/phoenix/test/runtest.sh"
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"tools/build/src/engine/execunix.c"
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"tools/build/src/engine/Jambase"
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"tools/build/src/engine/jambase.c")
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(("/bin/sh") sh))
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(setenv "SHELL" (which "sh"))
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(setenv "CONFIG_SHELL" (which "sh"))
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(invoke "./bootstrap.sh"
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(string-append "--prefix=" out)
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;; Auto-detection looks for ICU only in traditional
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;; install locations.
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(string-append "--with-icu=" icu)
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"--with-toolset=clang"))))
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(replace 'build
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(lambda* (#:key make-flags #:allow-other-keys)
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(apply invoke "./b2"
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(format #f "-j~a" (parallel-job-count))
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make-flags)))
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(replace 'install
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(lambda* (#:key make-flags #:allow-other-keys)
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(apply invoke "./b2" "install" make-flags))))))))
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(define-public boost-with-python2
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(package/inherit boost
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(name "boost-python2")
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(native-inputs
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`(("python" ,python-2)
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,@(alist-delete "python" (package-native-inputs boost))))))
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(define-public boost-with-python3
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(deprecated-package "boost-with-python3" boost))
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(define-public boost-static
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(package
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(inherit boost)
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(name "boost-static")
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(arguments
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(substitute-keyword-arguments (package-arguments boost)
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((#:make-flags flags)
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`(cons "link=static" (delete "link=shared" ,flags)))
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((#:phases phases)
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`(modify-phases ,phases
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(replace 'provide-libboost_python
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(lambda* (#:key inputs outputs #:allow-other-keys)
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(let* ((out (assoc-ref outputs "out"))
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(python-version (python-version
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(assoc-ref inputs "python")))
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(libboost_pythonNN.a
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(string-append "libboost_python"
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(string-join (string-split
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python-version #\.)
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"")
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".a")))
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(with-directory-excursion (string-append out "/lib")
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(symlink libboost_pythonNN.a "libboost_python.a"))
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#t)))))))))
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(define-public boost-for-mysql
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;; Older version for MySQL 5.7.23.
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(package
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(inherit boost)
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(version "1.59.0")
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(source (origin
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(method url-fetch)
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(uri (string-append
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"mirror://sourceforge/boost/boost/" version "/boost_"
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(string-map (lambda (x) (if (eq? x #\.) #\_ x)) version)
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".tar.bz2"))
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(sha256
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(base32
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"1jj1aai5rdmd72g90a3pd8sw9vi32zad46xv5av8fhnr48ir6ykj"))))
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(arguments (substitute-keyword-arguments (package-arguments boost)
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((#:phases phases)
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`(modify-phases ,phases
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(replace 'configure
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(lambda* (#:key inputs outputs #:allow-other-keys)
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(let ((icu (assoc-ref inputs "icu4c"))
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(out (assoc-ref outputs "out")))
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(substitute* (append
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(find-files "tools/build/src/engine/" "execunix\\.c.*")
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'("libs/config/configure"
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"libs/spirit/classic/phoenix/test/runtest.sh"
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"tools/build/doc/bjam.qbk"
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"tools/build/src/engine/Jambase"))
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(("/bin/sh") (which "sh")))
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(setenv "SHELL" (which "sh"))
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(setenv "CONFIG_SHELL" (which "sh"))
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,@(if (%current-target-system)
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`((call-with-output-file "user-config.jam"
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(lambda (port)
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(format port
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"using gcc : cross : ~a-c++ ;"
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,(%current-target-system)))))
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'())
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(invoke "./bootstrap.sh"
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(string-append "--prefix=" out)
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;; Auto-detection looks for ICU only in traditional
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;; install locations.
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(string-append "--with-icu=" icu)
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"--with-toolset=gcc"))))
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(delete 'provide-libboost_python)))
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((#:make-flags make-flags)
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`(cons* "--without-python" ,make-flags))))
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(native-inputs
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(alist-delete "python" (package-native-inputs boost)))
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(properties '((hidden? . #t)))))
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(define-public boost-sync
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(let ((commit "c72891d9b90e2ceb466ec859f640cd012b2d8709")
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(version "1.55")
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(revision "1"))
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(package
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(name "boost-sync")
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(version (git-version version revision commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/boostorg/sync")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"197mp5z048vz5kv1m4v3jm447l2gqsyv0rbfz11dz0ns343ihbyx"))))
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(build-system trivial-build-system)
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(arguments
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`(#:modules ((guix build utils))
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#:builder
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(begin
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(use-modules (guix build utils))
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(let ((source (assoc-ref %build-inputs "source")))
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(copy-recursively (string-append source "/include")
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(string-append %output "/include"))))))
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(home-page "https://github.com/boostorg/sync")
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(synopsis "Boost.Sync library")
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(description "The Boost.Sync library provides mutexes, semaphores, locks
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and events and other thread related facilities. Boost.Sync originated from
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Boost.Thread.")
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(license (license:x11-style "https://www.boost.org/LICENSE_1_0.txt")))))
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(define-public boost-signals2
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(package
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(name "boost-signals2")
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(version (package-version boost))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/boostorg/signals2")
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(commit (string-append "boost-" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"13i5j43nggb46i6qpaf7gk53i7zp7pimphl7sydyfqz2m9yx5cdy"))))
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(build-system trivial-build-system)
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(arguments
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`(#:modules ((guix build utils))
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#:builder
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(begin
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(use-modules (guix build utils))
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(let ((source (assoc-ref %build-inputs "source")))
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(copy-recursively (string-append source "/include")
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(string-append %output "/include"))))))
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(home-page "https://github.com/boostorg/signals2")
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(synopsis "Boost.Signals2 library")
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(description "The Boost.Signals2 library is an implementation of a managed
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signals and slots system.")
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(license (license:x11-style "https://www.boost.org/LICENSE_1_0.txt"))))
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(define-public boost-mpi
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(package
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(inherit boost)
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(name "boost-mpi")
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(native-inputs
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`(("perl" ,perl)
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,@(if (%current-target-system)
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'()
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`(("python" ,python-wrapper)))
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("openmpi" , openmpi)))
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(arguments
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|
(substitute-keyword-arguments (package-arguments boost)
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((#:phases phases)
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`(modify-phases ,phases
|
|
(add-after 'configure 'update-jam
|
|
(lambda* (#:key inputs outputs #:allow-other-keys)
|
|
(let ((output-port (open-file "project-config.jam" "a")))
|
|
(display "using mpi ;" output-port)
|
|
(newline output-port)
|
|
(close output-port))))))))
|
|
(home-page "https://www.boost.org")
|
|
(synopsis "Message Passing Interface (MPI) library for C++")))
|
|
|
|
(define-public mdds
|
|
(package
|
|
(name "mdds")
|
|
(version "1.5.0")
|
|
(source (origin
|
|
(method url-fetch)
|
|
(uri (string-append
|
|
"http://kohei.us/files/mdds/src/mdds-" version ".tar.bz2"))
|
|
(sha256
|
|
(base32
|
|
"03b8i43pw4m767mm0cnbi77x7qhpkzpi9b1f6dpp4cmyszmnsk8l"))))
|
|
(build-system gnu-build-system)
|
|
(propagated-inputs
|
|
`(("boost" ,boost))) ; inclusion of header files
|
|
(home-page "https://gitlab.com/mdds/mdds")
|
|
(synopsis "Multi-dimensional C++ data structures and indexing algorithms")
|
|
(description "Mdds (multi-dimensional data structure) provides a
|
|
collection of multi-dimensional data structures and indexing algorithms
|
|
for C++. It includes flat segment trees, segment trees, rectangle sets,
|
|
point quad trees, multi-type vectors and multi-type matrices.")
|
|
(license license:expat)))
|