466 lines
20 KiB
Scheme
466 lines
20 KiB
Scheme
;;; GNU Guix --- Functional package management for GNU
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;;; Copyright © 2014 John Darrington <jmd@gnu.org>
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;;; Copyright © 2014, 2015, 2018 Mark H Weaver <mhw@netris.org>
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;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
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;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org>
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;;; Copyright © 2015, 2019, 2020, 2021 Ludovic Courtès <ludo@gnu.org>
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;;; Copyright © 2017 Thomas Danckaert <post@thomasdanckaert.be>
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;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
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;;; Copyright © 2018 Arun Isaac <arunisaac@systemreboot.net>
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;;; Copyright © 2018, 2019, 2021 Ricardo Wurmus <rekado@elephly.net>
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;;; Copyright © 2018, 2020 Maxim Cournoyer <maxim.cournoyer@gmail.com>
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;;; Copyright © 2018, 2020 Efraim Flashner <efraim@flashner.co.il>
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;;; Copyright © 2019 Mathieu Othacehe <m.othacehe@gmail.com>
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;;; Copyright © 2019, 2020 Giacomo Leidi <goodoldpaul@autistici.org>
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;;; Copyright © 2020, 2022 Marius Bakke <marius@gnu.org>
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;;; Copyright © 2020 Jonathan Brielmaier <jonathan.brielmaier@web.de>
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;;; Copyright © 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org>
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;;; Copyright © 2021, 2022 Greg Hogan <code@greghogan.com>
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;;; Copyright © 2021 Franck Pérignon <franck.perignon@univ-grenoble-alpes.fr>
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;;; Copyright © 2021 Aleksandr Vityazev <avityazev@posteo.org>
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;;;
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;;; This file is part of GNU Guix.
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;;;
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;;; GNU Guix is free software; you can redistribute it and/or modify it
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;;; under the terms of the GNU General Public License as published by
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;;; the Free Software Foundation; either version 3 of the License, or (at
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;;; your option) any later version.
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;;;
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;;; GNU Guix is distributed in the hope that it will be useful, but
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;;; WITHOUT ANY WARRANTY; without even the implied warranty of
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;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;;; GNU General Public License for more details.
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;;;
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;;; You should have received a copy of the GNU General Public License
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;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
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(define-module (gnu packages boost)
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#:use-module ((guix licenses) #:prefix license:)
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#:use-module (guix utils)
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#:use-module (guix gexp)
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#:use-module (guix packages)
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#:use-module (guix download)
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#:use-module (guix git-download)
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#:use-module (guix build-system gnu)
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#:use-module (guix build-system trivial)
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#:use-module (gnu packages)
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#:use-module (gnu packages compression)
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#:use-module (gnu packages icu4c)
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#:use-module (gnu packages llvm)
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#:use-module (gnu packages perl)
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#:use-module (gnu packages python)
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#:use-module (gnu packages shells)
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#:use-module (gnu packages mpi))
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(define (version-with-underscores version)
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(string-map (lambda (x) (if (eq? x #\.) #\_ x)) version))
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(define (boost-patch name version hash)
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(origin
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(method url-fetch)
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(uri (string-append "https://www.boost.org/patches/"
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(version-with-underscores version) "/" name))
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(file-name (string-append "boost-" name))
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(sha256 (base32 hash))))
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(define-public boost
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(package
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(name "boost")
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(version "1.80.0")
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(source (origin
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(method url-fetch)
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(uri (string-append "https://boostorg.jfrog.io/artifactory/main/release/"
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version "/source/boost_"
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(version-with-underscores version) ".tar.bz2"))
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(patches
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(list (boost-patch
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;; Boost.Filesystem directory iterators may fail to
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;; construct for a network share on Windows prior to 10:
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;; https://github.com/boostorg/filesystem/pull/246,
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;; https://github.com/boostorg/filesystem/issues/245
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"0001-filesystem-win-fix-dir-it-net-share.patch" version
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"067hhylqkzzdbqzc1hkbpaqmvz248lxqrdhb2yi6iq9qabsik3lk")
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(boost-patch
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;; In Boost.Filesystem on Windows, weakly_canonical fails
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;; to process paths that start with the "\\?\" prefix:
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;; https://github.com/boostorg/filesystem/issues/247
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"0002-filesystem-fix-weakly-canonical-long-paths.patch" version
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"00w3albf8527glclx85p5b2ml3vr06xpwwmfyzg005v1cp8avcpi")
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(boost-patch
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;; Boost.Unordered containers are not in a valid state
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;; after moving:
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;; https://github.com/boostorg/unordered/issues/139
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"0003-unordered-valid-after-move.patch" version
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"0dw839w22cawqawfpsx7j7v9y0x2vn66m732iidpxvdxbjn2kzva")
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(boost-patch
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;; Fixed a missing include on POSIX systems that don't
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;; support *at APIs:
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;; https://github.com/boostorg/filesystem/issues/250
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"0004-filesystem-posix-fix-no-at-apis-missing-include.patch" version
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"09k8k3b1306jkjls12wfghj820n828j6aaxzmcr0wpnjhp8fzi1v")))
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(sha256
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(base32
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"1h00qp4z5k6lfz310xjwsmqs8fwxi6ngas51169cafz4h9fmc68y"))))
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(build-system gnu-build-system)
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(inputs
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(append
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(list icu4c zlib)
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(if (%current-target-system)
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'()
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(list python-minimal-wrapper))))
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(native-inputs
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(list perl tcsh))
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(arguments
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(list
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#:imported-modules `((guix build python-build-system)
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,@%gnu-build-system-modules)
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#:modules `(((guix build python-build-system) #:select (python-version))
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,@%gnu-build-system-modules)
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#:tests? #f
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#:configure-flags
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#~(let ((icu (dirname (dirname (search-input-file
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%build-inputs "bin/uconv")))))
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(list
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;; Auto-detection looks for ICU only in traditional
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;; install locations.
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(string-append "--with-icu=" icu)
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;; Ditto for Python.
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#$@(if (%current-target-system)
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#~()
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#~((let ((python (dirname (dirname (search-input-file
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%build-inputs
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"bin/python")))))
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(string-append "--with-python-root=" python)
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(string-append "--with-python=" python
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"/bin/python")
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(string-append "--with-python-version="
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(python-version python)))))
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"--with-toolset=gcc"))
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#:make-flags
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#~(list "threading=multi" "link=shared"
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;; Set the RUNPATH to $libdir so that the libs find each other.
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(string-append "linkflags=-Wl,-rpath="
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#$output "/lib")
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#$@(if (%current-target-system)
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#~("--user-config=user-config.jam"
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;; Python is not supported when cross-compiling.
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"--without-python"
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"binary-format=elf"
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"target-os=linux"
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#$@(cond
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((string-prefix? "arm" (%current-target-system))
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#~("abi=aapcs"
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"address-model=32"
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"architecture=arm"))
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((string-prefix? "aarch64" (%current-target-system))
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#~("abi=aapcs"
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"address-model=64"
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"architecture=arm"))
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(else #~())))
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#~()))
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#:phases
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#~(modify-phases %standard-phases
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(add-after 'unpack 'patch-shells
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(lambda _
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(substitute* '("libs/config/configure"
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"libs/spirit/classic/phoenix/test/runtest.sh"
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"tools/build/src/engine/execunix.cpp")
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(("/bin/sh") (which "sh")))))
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(delete 'bootstrap)
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(replace 'configure
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(lambda* (#:key (configure-flags ''()) #:allow-other-keys)
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(setenv "SHELL" (which "sh"))
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(setenv "CONFIG_SHELL" (which "sh"))
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#$@(if (%current-target-system)
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#~((call-with-output-file "user-config.jam"
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(lambda (port)
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(format port
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"using gcc : cross : ~a-c++ ;"
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#$(%current-target-system)))))
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#~())
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(apply invoke "./bootstrap.sh"
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(string-append "--prefix=" #$output)
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configure-flags)))
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(replace 'build
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(lambda* (#:key make-flags #:allow-other-keys)
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(apply invoke "./b2"
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(format #f "-j~a" (parallel-job-count))
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make-flags)))
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(replace 'install
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(lambda* (#:key make-flags #:allow-other-keys)
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(apply invoke "./b2" "install" make-flags)))
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#$@(if (%current-target-system)
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#~()
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#~((add-after 'install 'provide-libboost_python
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(lambda* (#:key make-flags inputs outputs #:allow-other-keys)
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(let* ((static? (member "link=static" make-flags))
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(libext (if static? ".a" ".so"))
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(python (dirname (dirname (search-input-file
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inputs "bin/python"))))
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(python-version (python-version python))
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(libboost_pythonNN
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(string-append "libboost_python"
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(string-join (string-split
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python-version #\.)
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"")
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libext)))
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(with-directory-excursion (string-append #$output "/lib")
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(symlink libboost_pythonNN
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(string-append "libboost_python" libext))
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;; Some packages only look for the major version.
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(symlink libboost_pythonNN
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(string-append "libboost_python"
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(string-take python-version 1)
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libext)))))))))))
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(home-page "https://www.boost.org")
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(synopsis "Peer-reviewed portable C++ source libraries")
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(description
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"A collection of libraries intended to be widely useful, and usable
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across a broad spectrum of applications.")
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(license (license:x11-style "https://www.boost.org/LICENSE_1_0.txt"
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"Some components have other similar licences."))))
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;; Sadly, this is needed for irods. It won't link with 1.69 or later.
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(define-public boost-for-irods
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(package
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(inherit boost)
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(name "boost-for-irods")
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(version "1.68.0")
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(source (origin
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(method url-fetch)
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(uri (string-append
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"mirror://sourceforge/boost/boost/" version "/boost_"
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(string-map (lambda (x) (if (eq? x #\.) #\_ x)) version)
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".tar.bz2"))
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(sha256
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(base32
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"1dyqsr9yb01y0nnjdq9b8q5s2kvhxbayk34832k5cpzn7jy30qbz"))))
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(build-system gnu-build-system)
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(properties `((hidden? . #true)))
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(inputs
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`(("icu4c" ,icu4c)
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("libcxx" ,libcxx+libcxxabi-6)
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("libcxxabi" ,libcxxabi-6)
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("zlib" ,zlib)))
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(native-inputs
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(list clang-6 perl tcsh))
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(arguments
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`(#:tests? #f
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#:make-flags
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(list "threading=multi" "link=shared"
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"cxxflags=-stdlib=libc++"
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"--without-python"
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;; Set the RUNPATH to $libdir so that the libs find each other.
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(string-append "linkflags=-stdlib=libc++ -Wl,-rpath="
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(assoc-ref %outputs "out") "/lib"))
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#:phases
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(modify-phases %standard-phases
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(delete 'bootstrap)
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(add-after 'set-paths 'adjust-CPLUS_INCLUDE_PATH
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(lambda* (#:key native-inputs inputs #:allow-other-keys)
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(let ((gcc (assoc-ref (or native-inputs inputs) "gcc")))
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(setenv "CPLUS_INCLUDE_PATH"
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(string-join
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(cons (search-input-directory inputs "/include/c++/v1")
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;; Hide GCC's C++ headers so that they do not interfere with
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;; the Clang headers.
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(delete (string-append gcc "/include/c++")
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(string-split (getenv "CPLUS_INCLUDE_PATH")
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#\:)))
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":"))
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(format #true
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"environment variable `CPLUS_INCLUDE_PATH' changed to ~a~%"
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(getenv "CPLUS_INCLUDE_PATH")))))
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(replace 'configure
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(lambda* (#:key inputs outputs #:allow-other-keys)
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(let ((icu (assoc-ref inputs "icu4c"))
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(out (assoc-ref outputs "out"))
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(sh (search-input-file inputs "/bin/sh")))
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(substitute* '("libs/config/configure"
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"libs/spirit/classic/phoenix/test/runtest.sh"
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"tools/build/src/engine/execunix.c"
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"tools/build/src/engine/Jambase"
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"tools/build/src/engine/jambase.c")
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(("/bin/sh") sh))
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(setenv "SHELL" (which "sh"))
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(setenv "CONFIG_SHELL" (which "sh"))
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(invoke "./bootstrap.sh"
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(string-append "--prefix=" out)
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;; Auto-detection looks for ICU only in traditional
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;; install locations.
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(string-append "--with-icu=" icu)
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"--with-toolset=clang"))))
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(replace 'build
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(lambda* (#:key make-flags #:allow-other-keys)
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(apply invoke "./b2"
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(format #f "-j~a" (parallel-job-count))
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make-flags)))
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(replace 'install
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(lambda* (#:key make-flags #:allow-other-keys)
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(apply invoke "./b2" "install" make-flags))))))))
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(define-public boost-with-python3
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(deprecated-package "boost-with-python3" boost))
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(define-public boost-static
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(package
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(inherit boost)
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(name "boost-static")
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(arguments
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(substitute-keyword-arguments (package-arguments boost)
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((#:make-flags flags)
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#~(cons "link=static" (delete "link=shared" #$flags)))))))
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(define-public boost-for-mysql
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;; Older version for MySQL 5.7.23.
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(package
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(inherit boost)
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(version "1.59.0")
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(source (origin
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(method url-fetch)
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(uri (string-append
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"mirror://sourceforge/boost/boost/" version "/boost_"
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(string-map (lambda (x) (if (eq? x #\.) #\_ x)) version)
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".tar.bz2"))
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(sha256
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(base32
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"1jj1aai5rdmd72g90a3pd8sw9vi32zad46xv5av8fhnr48ir6ykj"))))
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(arguments
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(substitute-keyword-arguments (package-arguments boost)
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((#:configure-flags _ #~'())
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#~(let ((icu (dirname (dirname (search-input-file
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%build-inputs "bin/uconv")))))
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(list
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;; Auto-detection looks for ICU only in traditional
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;; install locations.
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(string-append "--with-icu=" icu)
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"--with-toolset=gcc")))
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((#:phases phases)
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#~(modify-phases #$phases
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(replace 'patch-shells
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(lambda _
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(substitute* (append
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(find-files "tools/build/src/engine/" "execunix\\.c.*")
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'("libs/config/configure"
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"libs/spirit/classic/phoenix/test/runtest.sh"
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"tools/build/doc/bjam.qbk"
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"tools/build/src/engine/Jambase"))
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(("/bin/sh") (which "sh")))))
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(delete 'provide-libboost_python)))
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((#:make-flags make-flags)
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#~(cons* "--without-python" #$make-flags))))
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(inputs
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(modify-inputs (package-inputs boost)
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(delete "python-minimal-wrapper")))
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(properties '((hidden? . #t)))))
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(define-public boost-sync
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(let ((commit "e690de2d30e2f1649ff500c9a6f3539814994b1c")
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(version "1.55")
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(revision "2"))
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(package
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(name "boost-sync")
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(version (git-version version revision commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/boostorg/sync")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0473hb15affjq2804xa99ikk4y1gzi46rygd9zhncl28ib7mnn26"))))
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(build-system trivial-build-system)
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(arguments
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`(#:modules ((guix build utils))
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#:builder
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(begin
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(use-modules (guix build utils))
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(let ((source (assoc-ref %build-inputs "source")))
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(copy-recursively (string-append source "/include")
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(string-append %output "/include"))))))
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(home-page "https://github.com/boostorg/sync")
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(synopsis "Boost.Sync library")
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(description "The Boost.Sync library provides mutexes, semaphores, locks
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and events and other thread related facilities. Boost.Sync originated from
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Boost.Thread.")
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(license (license:x11-style "https://www.boost.org/LICENSE_1_0.txt")))))
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(define-public boost-signals2
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(package
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(name "boost-signals2")
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(version (package-version boost))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/boostorg/signals2")
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(commit (string-append "boost-" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1prhj98jgvkj2m3ia5lcgxnl1a4h13cyzqd55skjn983rivi6090"))))
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(build-system trivial-build-system)
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(arguments
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`(#:modules ((guix build utils))
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#:builder
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(begin
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(use-modules (guix build utils))
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(let ((source (assoc-ref %build-inputs "source")))
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(copy-recursively (string-append source "/include")
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(string-append %output "/include"))))))
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(home-page "https://github.com/boostorg/signals2")
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(synopsis "Boost.Signals2 library")
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(description "The Boost.Signals2 library is an implementation of a managed
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signals and slots system.")
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(license (license:x11-style "https://www.boost.org/LICENSE_1_0.txt"))))
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(define-public boost-mpi
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(package
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(inherit boost)
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(name "boost-mpi")
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(inputs
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(modify-inputs (package-inputs boost)
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(append openmpi)))
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(arguments
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(substitute-keyword-arguments (package-arguments boost)
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((#:phases phases)
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#~(modify-phases #$phases
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(add-after 'configure 'update-jam
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|
(lambda* (#:key inputs outputs #:allow-other-keys)
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(let ((output-port (open-file "project-config.jam" "a")))
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(display "using mpi ;" output-port)
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(newline output-port)
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(close output-port))))))))
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(home-page "https://www.boost.org")
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(synopsis "Message Passing Interface (MPI) library for C++")))
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(define-public mdds
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(package
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(name "mdds")
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(version "2.0.3")
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(source (origin
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(method url-fetch)
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(uri (string-append "https://kohei.us/files/mdds/src/mdds-"
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version ".tar.xz"))
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(sha256
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(base32
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"1r68kxqppmhfg0dhz54d0hqzs5882cqrv1x6wpg7lak6gyyws0bc"))))
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(build-system gnu-build-system)
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(propagated-inputs
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(list boost)) ; inclusion of header files
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(home-page "https://gitlab.com/mdds/mdds")
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(synopsis "Multi-dimensional C++ data structures and indexing algorithms")
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(description "Mdds (multi-dimensional data structure) provides a
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collection of multi-dimensional data structures and indexing algorithms
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for C++. It includes flat segment trees, segment trees, rectangle sets,
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point quad trees, multi-type vectors and multi-type matrices.")
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(license license:expat)))
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