fb799cb72e
* gnu/packages/haskell.scm (ghc)[arguments]: Add #:validate-runpath?. * gnu/packages/julia.scm (julia)[arguments]: Likewise. * gnu/packages/java.scm (icedtea6)[arguments]: Likewise.
190 lines
7.5 KiB
Scheme
190 lines
7.5 KiB
Scheme
;;; GNU Guix --- Functional package management for GNU
|
|
;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
|
|
;;;
|
|
;;; This file is part of GNU Guix.
|
|
;;;
|
|
;;; GNU Guix is free software; you can redistribute it and/or modify it
|
|
;;; under the terms of the GNU General Public License as published by
|
|
;;; the Free Software Foundation; either version 3 of the License, or (at
|
|
;;; your option) any later version.
|
|
;;;
|
|
;;; GNU Guix is distributed in the hope that it will be useful, but
|
|
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
|
|
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
|
;;; GNU General Public License for more details.
|
|
;;;
|
|
;;; You should have received a copy of the GNU General Public License
|
|
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
|
|
|
|
(define-module (gnu packages julia)
|
|
#:use-module ((guix licenses) #:prefix license:)
|
|
#:use-module (guix packages)
|
|
#:use-module (guix download)
|
|
#:use-module (guix build-system gnu)
|
|
#:use-module (gnu packages)
|
|
#:use-module (gnu packages algebra)
|
|
#:use-module (gnu packages base)
|
|
#:use-module (gnu packages elf)
|
|
#:use-module (gnu packages gcc)
|
|
#:use-module (gnu packages llvm)
|
|
#:use-module (gnu packages libunwind)
|
|
#:use-module (gnu packages maths)
|
|
#:use-module (gnu packages multiprecision) ; mpfr
|
|
#:use-module (gnu packages pcre)
|
|
#:use-module (gnu packages perl)
|
|
#:use-module (gnu packages pkg-config)
|
|
#:use-module (gnu packages python)
|
|
#:use-module (gnu packages textutils)
|
|
#:use-module (gnu packages version-control)
|
|
#:use-module (ice-9 match))
|
|
|
|
(define-public julia
|
|
(package
|
|
(name "julia")
|
|
(version "0.3.6")
|
|
(source (origin
|
|
(method url-fetch)
|
|
(uri (string-append
|
|
"https://github.com/JuliaLang/julia/releases/download/v"
|
|
version "/julia-" version "_0c24dca65c.tar.gz"))
|
|
(sha256
|
|
(base32
|
|
"1hnbc2blzr9bc27m3vsr127fhg0h5imgqlrx00jakf0my0ccw8gr"))))
|
|
(build-system gnu-build-system)
|
|
(arguments
|
|
`(#:test-target "test"
|
|
#:modules ((ice-9 match)
|
|
(guix build gnu-build-system)
|
|
(guix build utils))
|
|
|
|
|
|
;; The DSOs use $ORIGIN to refer to each other, but (guix build
|
|
;; gremlin) doesn't support it yet, so skip this phase.
|
|
#:validate-runpath? #f
|
|
|
|
#:phases
|
|
(alist-cons-after
|
|
'unpack 'hardcode-soname-map
|
|
;; ./src/ccall.cpp creates a map from library names to paths using the
|
|
;; output of "/sbin/ldconfig -p". Since ldconfig is not used in Guix,
|
|
;; we patch ccall.cpp to contain a static map.
|
|
(lambda* (#:key inputs #:allow-other-keys)
|
|
(use-modules (ice-9 match))
|
|
(substitute* "src/ccall.cpp"
|
|
(("jl_read_sonames.*;")
|
|
(string-join
|
|
(map (match-lambda
|
|
((input libname soname)
|
|
(string-append
|
|
"sonameMap[\"" libname "\"] = "
|
|
"\"" (assoc-ref inputs input) "/lib/" soname "\";")))
|
|
'(("libc" "libc" "libc.so.6")
|
|
("pcre" "libpcre" "libpcre.so")
|
|
("mpfr" "libmpfr" "libmpfr.so")
|
|
("openblas" "libblas" "libopenblas.so")
|
|
("arpack-ng" "libarpack" "libarpack.so")
|
|
("lapack" "liblapack" "liblapack.so")
|
|
("gmp" "libgmp" "libgmp.so")
|
|
("openlibm" "libopenlibm" "libopenlibm.so")
|
|
("openspecfun" "libopenspecfun" "libopenspecfun.so")
|
|
("fftw" "libfftw3" "libfftw3.so")
|
|
("fftwf" "libfftw3f" "libfftw3f.so")))))))
|
|
(alist-cons-before
|
|
'build 'replace-default-shell
|
|
(lambda _
|
|
(substitute* "base/client.jl"
|
|
(("/bin/sh") (which "sh"))))
|
|
(alist-cons-before
|
|
'build 'patch-include-path
|
|
(lambda _
|
|
(substitute* "deps/Makefile"
|
|
(("/usr/include/double-conversion")
|
|
(string-append (assoc-ref %build-inputs "double-conversion")
|
|
"/include/double-conversion"))))
|
|
(alist-cons-before
|
|
'check 'disable-broken-test
|
|
;; One test fails because it produces slightly different output.
|
|
(lambda _
|
|
(substitute* "test/repl.jl"
|
|
(("@test output") "# @test output")))
|
|
;; no configure script
|
|
(alist-delete 'configure %standard-phases)))))
|
|
#:make-flags
|
|
(list
|
|
(string-append "prefix=" (assoc-ref %outputs "out"))
|
|
|
|
;; Passing the MARCH flag is necessary to build binary substitutes for
|
|
;; the supported architectures.
|
|
,(match (or (%current-target-system)
|
|
(%current-system))
|
|
("x86_64-linux" "MARCH=x86-64")
|
|
("i686-linux" "MARCH=pentium4"))
|
|
|
|
"CONFIG_SHELL=bash" ;needed to build bundled libraries
|
|
"USE_SYSTEM_LIBUV=0" ;Julia expects a modified libuv
|
|
"USE_SYSTEM_DSFMT=0" ;not packaged for Guix and upstream has no
|
|
;build system for a shared library.
|
|
"USE_SYSTEM_RMATH=0" ;Julia uses a bundled version of R's math
|
|
;library, patched to use the DSFMT RNG.
|
|
|
|
"USE_SYSTEM_LAPACK=1"
|
|
"USE_SYSTEM_BLAS=1"
|
|
"USE_BLAS64=0" ;needed when USE_SYSTEM_BLAS=1
|
|
|
|
"USE_SYSTEM_FFTW=1"
|
|
"LIBFFTWNAME=libfftw3"
|
|
"LIBFFTWFNAME=libfftw3f"
|
|
|
|
;; TODO: Suitesparse does not install shared libraries, so we cannot
|
|
;; use the suitesparse package.
|
|
;; "USE_SYSTEM_SUITESPARSE=1"
|
|
;; (string-append "SUITESPARSE_INC=-I "
|
|
;; (assoc-ref %build-inputs "suitesparse")
|
|
;; "/include")
|
|
|
|
"USE_SYSTEM_GRISU=1" ;for double-conversion
|
|
"USE_SYSTEM_UTF8PROC=1"
|
|
"USE_SYSTEM_LLVM=1"
|
|
"USE_SYSTEM_LIBUNWIND=1"
|
|
"USE_SYSTEM_PCRE=1"
|
|
"USE_SYSTEM_OPENLIBM=1"
|
|
"USE_SYSTEM_GMP=1"
|
|
"USE_SYSTEM_MPFR=1"
|
|
"USE_SYSTEM_ARPACK=1"
|
|
"USE_SYSTEM_LIBGIT2=1"
|
|
"USE_SYSTEM_OPENSPECFUN=1")))
|
|
(inputs
|
|
`(("llvm" ,llvm-3.5)
|
|
("arpack-ng" ,arpack-ng)
|
|
("lapack" ,lapack)
|
|
("openblas" ,openblas) ;Julia does not build with Atlas
|
|
("libunwind" ,libunwind)
|
|
("openlibm" ,openlibm)
|
|
("openspecfun" ,openspecfun)
|
|
("double-conversion" ,double-conversion)
|
|
("fftw" ,fftw)
|
|
("fftwf" ,fftwf)
|
|
("fortran" ,gfortran-4.8)
|
|
("pcre" ,pcre)
|
|
("utf8proc" ,utf8proc)
|
|
("git" ,git)
|
|
("mpfr" ,mpfr)
|
|
("gmp" ,gmp)))
|
|
(native-inputs
|
|
`(("perl" ,perl)
|
|
("patchelf" ,patchelf)
|
|
("pkg-config" ,pkg-config)
|
|
("python" ,python-2)
|
|
("which" ,which)))
|
|
;; Julia is not officially released for ARM and MIPS.
|
|
;; See https://github.com/JuliaLang/julia/issues/10639
|
|
(supported-systems '("i686-linux" "x86_64-linux"))
|
|
(home-page "http://julialang.org/")
|
|
(synopsis "High-performance dynamic language for technical computing")
|
|
(description
|
|
"Julia is a high-level, high-performance dynamic programming language for
|
|
technical computing, with syntax that is familiar to users of other technical
|
|
computing environments. It provides a sophisticated compiler, distributed
|
|
parallel execution, numerical accuracy, and an extensive mathematical function
|
|
library.")
|
|
(license license:expat)))
|