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guix/gnu/packages
nafkhamdc ca4c9062c4
gnu: Add python-pdbfixer.
* gnu/packages/bioinformatics.scm (python-pdbfixer): New variable.

Change-Id: I2894a08ab3eed463f052b9df6372d4016b718d1a
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2024-02-10 11:21:21 +01:00
..
aux-files gnu: Remove linux-libre 4.14. 2024-01-22 13:24:20 -05:00
patches gnu: opam: Update to 2.1.5. 2024-02-08 23:23:32 +01:00
abduco.scm
abiword.scm
accessibility.scm
acct.scm
acl.scm
ada.scm
admin.scm gnu: Add pam-uaccess. 2024-02-05 14:04:32 +08:00
adns.scm
agda.scm
aidc.scm
algebra.scm gnu: arb: Deprecate package. 2024-01-26 10:09:35 +01:00
android.scm
animation.scm
anthy.scm
antivirus.scm gnu: clamav: Update to 0.103.11. 2024-02-05 15:14:45 +08:00
apl.scm
apparmor.scm
apple.scm
apr.scm
arcan.scm
aspell.scm
assembly.scm
astronomy.scm gnu gnuatro: Update to 0.22. 2024-02-06 19:00:56 +00:00
attr.scm
audio.scm gnu: qpwgraph: Update to 0.6.2. 2024-02-05 22:39:54 +01:00
augeas.scm
authentication.scm
autogen.scm
autotools.scm
avahi.scm
avr-xyz.scm
avr.scm
axoloti.scm gnu: axoloti-patcher: Add missing headers. 2024-01-30 22:44:43 +01:00
backup.scm gnu: go-github-com-minio-sha256-simd: Move to (gnu packages golang-crypto). 2024-01-28 23:21:05 +00:00
barrier.scm
base.scm gnu: Add python-tzdata. 2024-02-03 10:55:06 +01:00
bash.scm
batik.scm
bdw-gc.scm
benchmark.scm
bioconductor.scm gnu: r-tximeta: Update to 1.20.3. 2024-02-01 23:23:37 +01:00
bioinformatics.scm gnu: Add python-pdbfixer. 2024-02-10 11:21:21 +01:00
bison.scm
bittorrent.scm
books.scm gnu: Sort inputs in (gnu packages books) alphabetically. 2024-01-25 21:34:37 +00:00
boost.scm
bootloaders.scm
bootstrap.scm
bqn.scm
browser-extensions.scm gnu: ublock-origin: Update to 1.55.0. 2024-02-03 21:06:16 +01:00
build-tools.scm
busybox.scm
c.scm gnu: libdispatch: Update to 5.9.2. 2024-01-24 22:25:00 +02:00
calcurse.scm
calendar.scm gnu: libhdate: Fix pkg-config file. 2024-01-30 09:25:32 +02:00
ccache.scm
cdrom.scm
cedille.scm
certs.scm
check.scm gnu: go-github.com-smartystreets-goconvey: Move to (gnu packages golang-check). 2024-01-28 23:21:06 +00:00
chemistry.scm
chez.scm
chicken.scm
chromium.scm
ci.scm
cinnamon.scm
clifm.scm gnu: clifm: Update to 1.16 2024-02-09 22:19:08 +00:00
clojure.scm
cluster.scm
cmake.scm
cobol.scm
code.scm
commencement.scm
compression.scm gnu: pigz: Update to 2.8. 2024-02-09 22:19:08 +00:00
compton.scm
configuration-management.scm
conky.scm
connman.scm
containers.scm
convmv.scm
cook.scm
coq.scm gnu: coq: Update to 8.17.1. 2024-02-08 23:15:44 +01:00
cpio.scm
cpp.scm gnu: immer: Update to 0.8.1. 2024-01-28 08:13:16 +01:00
cppi.scm
cran.scm gnu: Add r-imifa. 2024-02-06 17:41:50 +01:00
crates-graphics.scm
crates-gtk.scm
crates-io.scm
cross-base.scm
cross-toolchain.scm
crypto.scm
cryptsetup.scm
cups.scm
curl.scm gnu: trurl: Update to 0.9. 2024-01-23 14:01:51 +00:00
cvassistant.scm
cybersecurity.scm
cyrus-sasl.scm
darwin.scm
databases.scm gnu: python-apsw: Update to 3.45.1.0. 2024-02-01 14:21:01 +08:00
datamash.scm
datastructures.scm
dav.scm
dbm.scm
dc.scm
debian.scm
debug.scm gnu: Add aflplusplus. 2024-01-25 23:48:49 +08:00
dejagnu.scm
dezyne.scm
dhall.scm
dico.scm
dictionaries.scm
diffoscope.scm gnu: diffoscope: Update to 256 [security fixes]. 2024-02-09 13:35:06 -08:00
digest.scm
direct-connect.scm
disk.scm
display-managers.scm
distributed.scm
django.scm
djvu.scm
dlang.scm gnu: dmd: Limit supported systems. 2024-01-28 08:29:57 +02:00
dns.scm
docbook.scm
docker.scm
documentation.scm
dvtm.scm
easyrpg.scm
ebook.scm
education.scm
efi.scm
electronics.scm
elf.scm
elixir-xyz.scm
elixir.scm gnu: elixir: Remove wrap for mix. 2024-02-08 12:07:53 +03:00
elm.scm
emacs-xyz.scm gnu: emacs-desktop-environment: Update to 0.5.0-0.bc1153a. 2024-02-05 22:42:21 +01:00
emacs.scm
embedded.scm
emulators.scm gnu: mbedtls-apache: Rename to mbedtls-lts. 2024-02-05 13:56:31 +08:00
enchant.scm
engineering.scm gnu: python-scikit-rf: Update to 0.31.0. 2024-01-24 20:02:47 -03:00
enlightenment.scm
entr.scm
erlang.scm
esolangs.scm
fabric-management.scm
fcitx.scm
fcitx5.scm
figlet.scm
file-systems.scm gnu: bcachefs-tools: Restyle format. 2024-02-09 22:19:07 +00:00
file.scm
finance.scm
firmware.scm
flashing-tools.scm
flex.scm
fltk.scm
fonts.scm gnu: Add font-oswald. 2024-02-05 22:43:18 +01:00
fontutils.scm
forth.scm
fpga.scm gnu: nvc: Update to 1.11.3. 2024-02-10 01:52:00 +01:00
freedesktop.scm
freeipmi.scm
fribidi.scm
fsf.scm
ftp.scm
fvwm.scm
game-development.scm Revert update to Renpy 8.2. 2024-02-08 22:05:09 +01:00
games.scm gnu: fheroes2: Update to 1.0.11. 2024-02-09 22:19:08 +00:00
gawk.scm
gcal.scm
gcc.scm gnu: Add gdc alias. 2024-01-26 15:38:34 -05:00
gd.scm
gdb.scm
genealogy.scm
genimage.scm
geo.scm gnu: Add python-geoip2fast. 2024-02-08 19:20:25 +01:00
gettext.scm
ghostscript.scm
gimp.scm
gkrellm.scm
gl.scm gnu: Add piglit. 2024-02-03 10:55:06 +01:00
glib.scm
gnome-xyz.scm
gnome.scm
gnu-doc.scm
gnu-pw-mgr.scm
gnucash.scm
gnunet.scm
gnupg.scm gnu: torbrowser: Stop inheriting Icecat. 2024-02-02 12:00:44 +01:00
gnustep.scm
gnuzilla.scm gnu: torbrowser: Update to 13.0.9. 2024-01-26 01:17:16 +01:00
gobby.scm
golang-check.scm gnu: Add go-github-com-prashantv-gostub. 2024-02-08 21:46:22 +00:00
golang-crypto.scm gnu: go-github-com-nats-io-nkeys: Update to 0.4.7. 2024-02-08 21:46:23 +00:00
golang-web.scm gnu: go-github-com-jmespath-go-jmespath: Add missing input. 2024-02-05 22:34:47 +00:00
golang-xyz.scm gnu: go-github-com-nats-io-nats-go: Update to 1.32.0. 2024-02-08 21:46:23 +00:00
golang.scm gnu: go-github-com-go-git-go-billy: Add missing input. 2024-02-05 22:34:47 +00:00
gperf.scm
gpodder.scm
gps.scm gnu: gama: Update to 2.28. 2024-02-09 22:19:08 +00:00
graph.scm gnu: Add python-graphtools. 2024-01-23 13:42:55 +01:00
graphics.scm
graphviz.scm
groff.scm
groovy.scm
gsasl.scm
gstreamer.scm
gtk.scm
guile-wm.scm
guile-xyz.scm gnu: guile-yamlpp: Update to 0.3. 2024-02-05 15:27:22 +08:00
guile.scm gnu: guile-next: Don't patch posix-spawn for the hurd. 2024-02-02 14:20:46 +01:00
gv.scm
gxmessage.scm
hardware.scm gnu: mbedtls-apache: Rename to mbedtls-lts. 2024-02-05 13:56:31 +08:00
haskell-apps.scm
haskell-check.scm
haskell-crypto.scm
haskell-web.scm
haskell-xyz.scm
haskell.scm
haxe.scm gnu: mbedtls-apache: Rename to mbedtls-lts. 2024-02-05 13:56:31 +08:00
heads.scm
hexedit.scm
high-availability.scm gnu: nats-server: Update to 2.10.10. 2024-02-08 21:46:23 +00:00
hugs.scm
hunspell.scm
hurd.scm
hyperledger.scm
i2p.scm
ibus.scm
icu4c.scm
idris.scm
idutils.scm
image-processing.scm gnu: vxl: Update to 3.5.0. 2024-02-09 22:19:08 +00:00
image-viewers.scm
image.scm
imagemagick.scm
inklingreader.scm
inkscape.scm
installers.scm
instrumentation.scm
ipfs.scm gnu: kubo: Update to 0.19.0. 2024-02-09 16:34:10 +00:00
irc.scm gnu: mbedtls-apache: Rename to mbedtls-lts. 2024-02-05 13:56:31 +08:00
irods.scm
iso-codes.scm
jami.scm gnu: jami: Update to 20240124.3. 2024-01-31 21:59:11 -05:00
java-bootstrap.scm
java-compression.scm
java-graphics.scm
java-maths.scm
java-rdf.scm
java-xml.scm
java.scm
javascript.scm
jemalloc.scm
jose.scm
julia-jll.scm gnu: mbedtls-apache: Rename to mbedtls-lts. 2024-02-05 13:56:31 +08:00
julia-xyz.scm
julia.scm gnu: mbedtls-apache: Rename to mbedtls-lts. 2024-02-05 13:56:31 +08:00
jupyter.scm gnu: python-ipydatawidgets: Fix build. 2024-02-06 22:48:50 +00:00
kawa.scm
kde-frameworks.scm
kde-games.scm
kde-internet.scm
kde-multimedia.scm
kde-pim.scm
kde-plasma.scm
kde-systemtools.scm
kde-utils.scm
kde.scm
kerberos.scm
kodi.scm
language.scm
ld-wrapper.in
lean.scm
lego.scm
less.scm
lesstif.scm
libbsd.scm
libcanberra.scm
libdaemon.scm
libedit.scm
libevent.scm
libffcall.scm
libffi.scm
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm
libsigsegv.scm
libunistring.scm
libunwind.scm
libusb.scm
license.scm
lighting.scm
linphone.scm gnu: mbedtls-apache: Rename to mbedtls-lts. 2024-02-05 13:56:31 +08:00
linux.scm gnu: linux-libre 6.1: Update to 6.1.77. 2024-02-08 19:10:58 -05:00
lirc.scm
lisp-check.scm
lisp-xyz.scm gnu: cl-legit: Update to 1.0.0-3.9c677b9. 2024-02-05 14:36:05 +01:00
lisp.scm gnu: janet: Update to 1.33.0 2024-02-07 16:31:26 +01:00
llvm.scm
logging.scm gnu: spdlog: Update to 1.13.0. 2024-02-05 22:54:51 +01:00
logo.scm
loko.scm
lout.scm
lsof.scm
lua.scm
lxde.scm
lxqt.scm
m4.scm
machine-learning.scm gnu: Add openmm. 2024-02-06 16:19:42 +01:00
magic-wormhole.scm
mail.scm gnu: mumi: Update to 0.0.8. 2024-01-29 10:23:15 -05:00
make-bootstrap.scm
man.scm
markup.scm
marst.scm
mastodon.scm
mate.scm
maths.scm gnu: frama-c: Update to 27.1. 2024-02-08 23:23:08 +01:00
matrix.scm
maven-parent-pom.scm
maven.scm
mc.scm
mcrypt.scm
medical.scm
mercury.scm
mes.scm
messaging.scm gnu: tdlib: Update to 1.8.24. 2024-02-05 16:31:36 +03:00
microcom.scm
minetest.scm
mingw.scm
moe.scm gnu: moe: Update to 1.14. 2024-02-09 22:19:08 +00:00
mold.scm
monitoring.scm
moreutils.scm
motti.scm
mp3.scm
mpd.scm
mpi.scm
mtools.scm
multiprecision.scm
music.scm gnu: picard: Update to 2.11. 2024-02-05 14:06:49 +08:00
musl.scm
myrddin.scm
ncdu.scm
ncurses.scm
netpbm.scm
nettle.scm
networking.scm gnu: phantomsocks: Update to 0.0.0-20240125140126-2576269ca69a. 2024-02-05 14:06:09 +08:00
nfs.scm
nickle.scm
nicotine.scm
nim.scm
ninja.scm
node-xyz.scm gnu: Add node-path-key. 2024-02-03 18:04:18 +01:00
node.scm
notcurses.scm
noweb.scm
nss.scm
ntp.scm
nutrition.scm
nvi.scm
ocaml.scm gnu: opam: Update to 2.1.5. 2024-02-08 23:23:32 +01:00
ocr.scm
onc-rpc.scm
openbox.scm
opencl.scm
opencog.scm
openkinect.scm
openldap.scm
openpgp.scm
openstack.scm
orange.scm
orpheus.scm
ots.scm
package-management.scm gnu: guix-build-coordinator: Update to 0-96.d9fa794. 2024-02-02 14:20:46 +01:00
pantheon.scm
parallel.scm
pascal.scm
password-utils.scm gnu: go-filippo-io-edwards25519: Move to (gnu packages golang-crypto). 2024-01-28 23:21:03 +00:00
patchutils.scm
patool.scm gnu: patool: Update to 2.1.1. 2024-02-09 22:19:09 +00:00
pciutils.scm
pcre.scm
pdf.scm gnu: mupdf: Update to 1.23.9. 2024-02-09 22:19:08 +00:00
pem.scm
pep.scm
perl-check.scm
perl-compression.scm
perl-maths.scm
perl-web.scm
perl.scm
perl6.scm
phabricator.scm
photo.scm
php-xyz.scm
php.scm
piet.scm
pikchr.scm
pkg-config.scm
plan9.scm
plotutils.scm
poedit.scm
polkit.scm
popt.scm
potassco.scm gnu: Add lua-clingo. 2024-02-03 10:55:06 +01:00
presentation.scm
pretty-print.scm gnu: fmt-10: Update to 10.2.1. 2024-02-05 23:00:12 +01:00
printers.scm
profiling.scm
prolog.scm
protobuf.scm
pth.scm
pulseaudio.scm
pumpio.scm
pure.scm
purescript.scm
pv.scm
pypy.scm
python-build.scm
python-check.scm
python-compression.scm
python-crypto.scm
python-science.scm gnu: python-traittypes: Simplify package. 2024-02-06 21:11:40 +00:00
python-web.scm gnu: python-pyscss: Update to 1.4.0. 2024-01-25 20:49:35 +01:00
python-xyz.scm gnu: python-shapely: Update to 2.0.2. 2024-02-07 13:50:53 +01:00
python.scm
qt.scm gnu: qtwebengine: Update to 6.5.3. 2024-01-27 18:30:20 +02:00
quantum.scm gnu: Add cl-qvm. 2024-01-28 17:15:34 +01:00
racket.scm
radio.scm
ragel.scm
rails.scm
raspberry-pi.scm
ratpoison.scm
rcm.scm
rdesktop.scm
rdf.scm
re2c.scm
readline.scm
rednotebook.scm
regex.scm
robotics.scm
rocm.scm
rpc.scm
rpm.scm
rrdtool.scm
rsync.scm
ruby.scm
rush.scm
rust-apps.scm
rust.scm
sagemath.scm gnu: pynac: Remove package. 2024-01-26 10:09:35 +01:00
samba.scm
sawfish.scm
scanner.scm
scheme.scm
screen.scm
scribus.scm
scsi.scm
sdl.scm
search.scm gnu: mbedtls-apache: Rename to mbedtls-lts. 2024-02-05 13:56:31 +08:00
security-token.scm
selinux.scm
sequoia.scm
serialization.scm
serveez.scm
shells.scm gnu: fish: Update to 3.7.0. 2024-01-28 22:50:49 +01:00
shellutils.scm
simh.scm
simulation.scm
skarnet.scm
skribilo.scm
slang.scm
smalltalk.scm
sml.scm
solidity.scm
sourcehut.scm
speech.scm
sphinx.scm gnu: Add python-sphinx-issues. 2024-01-26 22:14:43 +00:00
spice.scm
spreadsheet.scm
sqlite.scm gnu: sqlite-next: Update to 3.45.1. 2024-02-01 14:20:55 +08:00
squirrel.scm
ssh.scm
sssd.scm
statistics.scm gnu: python-rpy2: Update to 3.5.15. 2024-02-03 10:55:07 +01:00
stb.scm
stenography.scm
storage.scm
suckless.scm
sugar.scm
swig.scm
sycl.scm
sync.scm
syncthing.scm gnu: syncthing: Update to 1.27.2. 2024-02-09 22:19:08 +00:00
syndication.scm
synergy.scm
task-management.scm
task-runners.scm
tbb.scm
tcl.scm
telegram.scm
telephony.scm
terminals.scm
terraform.scm
tex.scm gnu: texstudio: Update to 4.7.2. 2024-02-05 23:12:11 +01:00
texinfo.scm
texlive.scm
text-editors.scm
textutils.scm gnu: vale: Remove package labeles. 2024-02-09 22:19:09 +00:00
time.scm gnu: python-tzlocal: Update to 5.2. 2024-02-03 10:55:06 +01:00
tls.scm gnu: Add mbedtls, version 3.5.2. 2024-02-05 13:56:37 +08:00
tmux.scm
toolkits.scm
tor-browsers.scm gnu: Add mullvadbrowser. 2024-02-05 15:05:41 +01:00
tor.scm gnu: torbrowser: Stop inheriting Icecat. 2024-02-02 12:00:44 +01:00
toys.scm gnu: xsnow: Update to 3.7.7. 2024-02-05 23:03:36 +01:00
tree-sitter.scm
tryton.scm
tv.scm
uglifyjs.scm
uml.scm
unicode.scm
unrtf.scm
upnp.scm
usb-modeswitch.scm
uucp.scm gnu: go-lukechampine-com-blake3: Move to (gnu packages golang-crypto). 2024-01-28 23:21:05 +00:00
valgrind.scm
version-control.scm gnu: go-github-com-xanzy-ssh-agent: Move to (gnu packages golang-crypto). 2024-01-28 23:21:06 +00:00
video.scm gnu: mbedtls-apache: Rename to mbedtls-lts. 2024-02-05 13:56:31 +08:00
vim.scm
virtualization.scm gnu: virt-manager: Don't propagate qemu. 2024-02-01 14:21:55 +08:00
vlang.scm
vnc.scm
vpn.scm
vulkan.scm
w3m.scm
wdiff.scm
weather.scm
web-browsers.scm gnu: nyxt: Update to 3.11.2. 2024-02-05 14:36:05 +01:00
web.scm gnu: wabt: Update to 1.0.34. 2024-02-09 13:39:00 -08:00
webkit.scm gnu: webkitgtk: Update to 2.42.4 [fixes CVE-2023-42883]. 2024-01-24 10:47:05 -05:00
wget.scm
wine.scm
wireservice.scm
wm.scm gnu: wlr-randr: Update to 0.4.0. 2024-02-09 22:19:08 +00:00
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm
xfce.scm
xfig.scm
xiph.scm
xml.scm
xnee.scm
xorg.scm gnu: Add egl-gbm. 2024-02-05 14:13:22 +08:00
zig-xyz.scm
zig.scm
zile.scm
zwave.scm