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guix/gnu/packages
Roel Janssen 78799a6fdc
gnu: Update minimap2 to 2.17.
* gnu/packages/bioinformatics.scm (minimap2): Update to 2.17.
2020-04-27 21:34:10 +02:00
..
aux-files pack: 'guix pack -R' wrapper correctly reports exit code. 2020-04-24 16:21:13 +02:00
patches gnu: arm-trusted-firmware: Update to 2.3. 2020-04-25 17:08:52 -07:00
abduco.scm
abiword.scm
accessibility.scm
acct.scm
acl.scm
ada.scm
admin.scm gnu: ktsuss: Use setuid "su" and "sudo" commands. 2020-04-27 18:17:24 +02:00
adns.scm
agda.scm
aidc.scm gnu: qrcodegen-cpp: Update to 1.6.0. 2020-04-18 22:23:51 +03:00
algebra.scm gnu: pari-gp: Update to 2.11.4. 2020-04-22 18:29:52 +02:00
android.scm
animation.scm
anthy.scm
antivirus.scm
apl.scm
apr.scm
arcan.scm
aspell.scm
assembly.scm
astronomy.scm
attr.scm
audio.scm
augeas.scm gnu: augeas: Use HTTPS home page. 2020-04-16 19:42:20 +02:00
authentication.scm
autogen.scm
autotools.scm
avahi.scm
avr.scm
axoloti.scm
backup.scm gnu: Use the test-only time zone database where appropriate. 2020-04-17 17:26:56 -04:00
base.scm
bash.scm
batik.scm gnu: java-xmlgraphics-commons: Update to 2.4. 2020-04-13 06:56:55 +02:00
bdw-gc.scm
benchmark.scm
bioconductor.scm gnu: Add r-cummerbund. 2020-04-27 11:46:08 +02:00
bioinformatics.scm gnu: Update minimap2 to 2.17. 2020-04-27 21:34:10 +02:00
bison.scm
bittorrent.scm
boost.scm
bootloaders.scm gnu: u-boot: Update to 2020.04. 2020-04-24 15:59:44 -07:00
bootstrap.scm
build-tools.scm gnu: gn: Update to 0.0-1736.ec938dd. 2020-04-12 17:05:53 +02:00
busybox.scm
c.scm
calcurse.scm gnu: calcurse: Adjust for Guile 3.0. 2020-04-26 13:31:15 +02:00
calendar.scm gnu: khal: Move propagated inputs to inputs. 2020-04-17 10:42:41 +03:00
ccache.scm
cdrom.scm
cedille.scm
certs.scm
check.scm gnu: python-pytest-timeout: Update to 1.3.4. 2020-04-24 23:24:23 +02:00
chemistry.scm gnu: nmoldyn: Adjust for Guile 3.0. 2020-04-26 13:31:16 +02:00
chez.scm
chicken.scm
chromium.scm gnu: ungoogled-chromium: Update to 81.0.4044.122-0.31d6e60 [security fixes]. 2020-04-22 16:08:26 +02:00
ci.scm gnu: cuirass: Update to 0.0.1-29.27af1d3. 2020-04-15 20:02:55 +02:00
cinnamon.scm
clojure.scm
cluster.scm
cmake.scm
cobol.scm
code.scm
commencement.scm
compression.scm gnu: tarsplitter: Fix typo in description (spilt/split). 2020-04-27 20:43:32 +02:00
compton.scm
conky.scm
connman.scm
cook.scm gnu: cook: Fix test failure. 2020-04-14 22:48:52 +02:00
coq.scm
cpio.scm
cpp.scm
cppi.scm
cran.scm gnu: Add r-inum. 2020-04-27 11:15:38 +02:00
crates-io.scm gnu: Add rav1e. 2020-04-26 19:57:46 +03:00
cross-base.scm
crypto.scm
cryptsetup.scm
cups.scm
curl.scm
cvassistant.scm
cybersecurity.scm
cyrus-sasl.scm
databases.scm gnu: sparql-query: Sort inputs alphabetically. 2020-04-20 08:42:05 +03:00
datamash.scm gnu: datamash: Update to 1.7. 2020-04-24 14:52:32 +03:00
datastructures.scm gnu: liburcu: Update to 0.12.1. 2020-04-23 19:07:20 +02:00
dav.scm
dbm.scm
dc.scm
debian.scm gnu: debootstrap: Update to 1.0.123. 2020-04-13 06:56:54 +02:00
debug.scm
dejagnu.scm
dico.scm
dictionaries.scm gnu: grammalecte: Update to 1.9.0. 2020-04-23 19:17:52 +02:00
diffoscope.scm gnu: diffoscope.scm: Add missing import. 2020-04-17 07:33:37 +01:00
digest.scm
direct-connect.scm
disk.scm gnu: Add udevil. 2020-04-23 00:19:21 +02:00
display-managers.scm gnu: lightdm-gtk-greeter: Update to 2.0.7. 2020-04-13 06:56:54 +02:00
distributed.scm
django.scm
djvu.scm
dlang.scm gnu: Add gtkd. 2020-04-15 15:15:27 +02:00
dns.scm gnu: maradns: Fix cross compilation. 2020-04-26 15:14:46 +05:30
docbook.scm
docker.scm
documentation.scm
drones.scm
dunst.scm
dvtm.scm
easyrpg.scm
ebook.scm
ed.scm
education.scm gnu: Add the GNU MDK. 2020-04-16 18:33:21 +02:00
efi.scm
electronics.scm
elf.scm
elixir.scm gnu: elixir: Update to 1.10.3. 2020-04-25 22:26:48 +02:00
elm.scm
emacs-xyz.scm gnu: emacs-org-reveal: Fix syntax error in description. 2020-04-27 10:45:51 +02:00
emacs.scm
embedded.scm
emulators.scm
enchant.scm
engineering.scm gnu: volk: Update to 2.2.1. 2020-04-14 10:25:28 +03:00
enlightenment.scm
entr.scm
erlang.scm
fabric-management.scm
fcitx.scm
figlet.scm
file-systems.scm gnu: disorderfs: Update to 0.5.9. 2020-04-16 20:46:35 -07:00
file.scm
finance.scm gnu: flowee: Update to 2020.03.2 2020-04-25 22:24:00 +02:00
firmware.scm gnu: arm-trusted-firmware: Update to 2.3. 2020-04-25 17:08:52 -07:00
flashing-tools.scm
flex.scm
fltk.scm
fonts.scm gnu: GNU FreeFont: Add a deprecated alias for "font-gnu-freefont-ttf". 2020-04-23 12:35:43 -04:00
fontutils.scm gnu: fontmanager: Update to 0.7.7. 2020-04-25 22:54:11 +02:00
forth.scm
fpga.scm
freedesktop.scm gnu: udiskie: Fix grammar of "allows to manage" to "manages". 2020-04-12 14:22:58 -07:00
freeipmi.scm
fribidi.scm
ftp.scm
fvwm.scm
game-development.scm gnu: guile3.0-chickadee: Rename to guile3.0-chickadee. 2020-04-26 19:44:33 +01:00
games.scm gnu: chess: Update to 6.2.6. 2020-04-18 21:01:52 +03:00
gawk.scm
gcal.scm
gcc.scm
gd.scm
gdb.scm
genealogy.scm gnu: font-gnu-freefont: Add otf and woff font types. 2020-04-22 17:59:44 -04:00
genimage.scm
geo.scm gnu: josm: Fix grammar of "allows to edit" to "allows editing". 2020-04-12 15:29:28 -07:00
gettext.scm
ghostscript.scm
gimp.scm gnu: mypaint-brushes: Update to 2.0.2. 2020-04-12 15:22:26 +02:00
gkrellm.scm
gl.scm
glib.scm gnu: perl-glib: Update to 1.3292. 2020-04-26 10:22:14 +03:00
gnome-xyz.scm gnu: gnome-shell-extension-hide-app-icon: Fix grammar of "allows to hide" to 2020-04-12 14:08:53 -07:00
gnome.scm gnu: Add piper. 2020-04-23 00:55:51 +02:00
gnu-doc.scm
gnu-pw-mgr.scm
gnucash.scm
gnunet.scm
gnupg.scm
gnustep.scm
gnuzilla.scm gnu: IceCat: Build with the latest libvpx. 2020-04-15 13:48:54 +02:00
gobby.scm
golang.scm gnu: go-golang.org-x-sync-errgroup: Fix spelling of "cancellation". 2020-04-12 12:03:26 -07:00
gperf.scm
gpodder.scm gnu: python-podcastparser: Run tests. 2020-04-17 13:03:02 +02:00
gps.scm gnu: gama: Update to 2.08. 2020-04-22 23:10:22 +03:00
graph.scm
graphics.scm
graphviz.scm
groff.scm
groovy.scm
gsasl.scm
gstreamer.scm
gtk.scm gnu: graphene: Update to 1.10.0. 2020-04-20 08:42:05 +03:00
guile-wm.scm
guile-xyz.scm gnu: guile-8sync: Add support for gnu updater. 2020-04-22 23:10:22 +03:00
guile.scm
gv.scm
gxmessage.scm
hardware.scm gnu: hardware: Add copyright line. 2020-04-15 10:04:58 +02:00
haskell-apps.scm
haskell-check.scm
haskell-crypto.scm
haskell-web.scm
haskell-xyz.scm gnu: ghc-smallcheck: Fix grammar of "allows to verify" to "verifies". 2020-04-12 14:08:45 -07:00
haskell.scm
hexedit.scm
hugs.scm
hurd.scm
hyperledger.scm
i2p.scm gnu: i2pd: Update to 2.31.0. 2020-04-14 20:23:21 +02:00
ibus.scm
icu4c.scm gnu: icu4c: Add 66.1. 2020-04-12 17:39:30 +02:00
idris.scm
idutils.scm
image-processing.scm
image-viewers.scm
image.scm gnu: libavif: Update to 0.7.1. 2020-04-18 15:08:36 -04:00
imagemagick.scm
inklingreader.scm
inkscape.scm
installers.scm
ipfs.scm
irc.scm gnu: weechat: Update to 2.8. 2020-04-12 21:20:09 +02:00
iso-codes.scm
java-compression.scm
java-graphics.scm
java-maths.scm
java.scm gnu: java-bouncycastle: Don't use unstable tarball. 2020-04-20 08:42:06 +03:00
javascript.scm
jemalloc.scm
jose.scm
jrnl.scm
julia.scm gnu: julia: Use libgit2-0.28. 2020-04-12 16:15:46 +03:00
jupyter.scm
kawa.scm gnu: kawa: Update to 3.1.1. 2020-04-14 07:07:04 +02:00
kde-frameworks.scm gnu: Use the test-only time zone database where appropriate. 2020-04-17 17:26:56 -04:00
kde-internet.scm gnu: libgravatar: Fix grammar of "allows to retrieve" to "retrieves". 2020-04-12 13:54:27 -07:00
kde-multimedia.scm gnu: elisa: Fix grammar of "allows to browse" to "browses". 2020-04-12 13:54:25 -07:00
kde-pim.scm gnu: kdav: Fix spelling of "implementation". 2020-04-12 12:03:32 -07:00
kde-plasma.scm
kde-systemtools.scm gnu: dolphin: Fix grammar of "allows to navigate" to "navigates". 2020-04-12 13:54:19 -07:00
kde-utils.scm
kde.scm
kerberos.scm
key-mon.scm
kodi.scm
language.scm
ld-wrapper-next.in
ld-wrapper.in
lean.scm
lego.scm
less.scm
lesstif.scm
libbsd.scm
libcanberra.scm
libdaemon.scm
libedit.scm
libevent.scm
libffcall.scm
libffi.scm
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm
libsigsegv.scm
libunistring.scm
libunwind.scm
libusb.scm
license.scm
lighting.scm
linphone.scm gnu: liblinphone: Move documentation and tester to separate outputs. 2020-04-27 00:54:44 -04:00
linux.scm gnu: tpacpi-bat: Adjust for Guile 3.0. 2020-04-26 13:31:16 +02:00
lirc.scm gnu: lirc: Fix grammar of "allows to translate" to "translates". 2020-04-12 13:54:22 -07:00
lisp-xyz.scm gnu: Add osicat. 2020-04-25 19:45:29 +02:00
lisp.scm gnu: txr: Update to 235. 2020-04-14 20:23:22 +02:00
llvm.scm gnu: llvm: Add 10.0.0. 2020-04-24 16:21:13 +02:00
logging.scm
logo.scm
lolcode.scm
lout.scm
lsof.scm
lua.scm
lxde.scm gnu: spacefm: Add dependencies for extra functionality. 2020-04-24 22:03:09 +02:00
lxqt.scm
m4.scm
machine-learning.scm gnu: Add python-scikit-rebate. 2020-04-27 13:54:43 +02:00
magic-wormhole.scm
mail.scm gnu: Add sylpheed. 2020-04-26 12:47:19 +02:00
make-bootstrap.scm
man.scm gnu: man-pages: Update to 5.06. 2020-04-14 17:33:11 +02:00
markup.scm
marst.scm
mastodon.scm gnu: toot: Update to 0.26.0. 2020-04-16 22:40:39 +03:00
mate.scm
maths.scm gnu: maths: dune-*: Update to version 2.7 2020-04-22 19:23:58 +02:00
matrix.scm gnu: Remove duplicate python-prometheus-client. 2020-04-12 08:59:29 +03:00
maven.scm
mc.scm
mcrypt.scm
medical.scm
mes.scm
messaging.scm gnu: dino: Update to 0.1.0. 2020-04-12 03:03:21 +05:30
microcom.scm
mingw.scm
moe.scm
monitoring.scm gnu: Remove duplicate python-prometheus-client. 2020-04-12 08:59:29 +03:00
mono.scm
moreutils.scm
motti.scm
mp3.scm
mpd.scm gnu: MPD: Update to 0.21.22. 2020-04-13 17:55:16 -04:00
mpi.scm
mtools.scm
multiprecision.scm
music.scm gnu: Add wolf-spectrum. 2020-04-23 23:59:23 +02:00
musl.scm
nano.scm
ncdu.scm
ncurses.scm
netpbm.scm
nettle.scm
networking.scm gnu: Squid: Update to 4.11 [fixes CVE-2020-{11945,12519,12521}]. 2020-04-23 13:25:14 -04:00
nfs.scm
nickle.scm
nim.scm gnu: nim: Adjust for Guile 3.0. 2020-04-26 13:31:16 +02:00
ninja.scm
node-xyz.scm gnu: Add node-semver. 2020-04-18 21:36:26 +03:00
node.scm
noweb.scm
nss.scm
ntp.scm
nutrition.scm
nvi.scm
ocaml.scm gnu: ocamlify: Fix grammar of "allows to create" to "creates". 2020-04-12 16:25:56 -07:00
ocr.scm
onc-rpc.scm
openbox.scm
opencl.scm
opencog.scm
openldap.scm
openstack.scm
orpheus.scm
ots.scm
package-management.scm gnu: guix: Update to 7dd0539. 2020-04-24 16:53:43 +02:00
parallel.scm gnu: parallel: Update to 20200422. 2020-04-22 23:10:22 +03:00
password-utils.scm gnu: keepassxc: Update to 2.5.4. 2020-04-13 16:32:16 +02:00
patchutils.scm
pciutils.scm
pcre.scm
pdf.scm gnu: python-reportlib: Update to 3.5.42. 2020-04-25 22:51:37 +03:00
pem.scm
perl-check.scm
perl-compression.scm
perl-web.scm
perl.scm gnu: Add perl-authen-passphrase. 2020-04-14 14:41:40 +01:00
perl6.scm
phabricator.scm
photo.scm gnu: hugin: Update to 2019.2.0. 2020-04-26 12:14:49 +02:00
php.scm gnu: php: Update to 7.4.5. 2020-04-19 22:57:16 +02:00
pkg-config.scm
plotutils.scm
poedit.scm
polkit.scm
popt.scm
pretty-print.scm
printers.scm
profiling.scm
prolog.scm
protobuf.scm
pth.scm
pulseaudio.scm gnu: pavucontrol: Fix icons. 2020-04-25 23:01:29 +02:00
pumpio.scm
pure.scm
pv.scm
python-check.scm
python-compression.scm
python-crypto.scm
python-science.scm
python-web.scm gnu: python-publicsuffix2: Adjust for Guile 3.0. 2020-04-26 13:31:16 +02:00
python-xyz.scm gnu: Add python-bitarray. 2020-04-27 13:09:02 +02:00
python.scm
qt.scm gnu: qt@4: Update source URI. 2020-04-22 16:08:26 +02:00
radio.scm gnu: fldigi: Update to 4.1.12. 2020-04-27 16:54:34 +02:00
ragel.scm
rails.scm
ratpoison.scm
rcm.scm
rdesktop.scm
rdf.scm gnu: Add python-rdflib-jsonld. 2020-04-21 12:41:47 +03:00
re2c.scm
readline.scm
rednotebook.scm
regex.scm
robotics.scm
rpc.scm
rrdtool.scm
rsync.scm
ruby.scm gnu: ruby-notiffany: Fix spelling of "library". 2020-04-12 12:03:21 -07:00
rush.scm
rust-apps.scm gnu: Add rav1e. 2020-04-26 19:57:46 +03:00
rust.scm
sagemath.scm gnu: brial: Update to 1.2.8. 2020-04-12 21:20:09 +02:00
samba.scm
sawfish.scm
scanner.scm
scheme.scm
screen.scm
scribus.scm
scsi.scm
sdcc.scm
sdl.scm
search.scm
security-token.scm
selinux.scm
serialization.scm
serveez.scm
shells.scm gnu: mksh: Update to 58. 2020-04-14 20:23:22 +02:00
shellutils.scm
simh.scm
simulation.scm
skarnet.scm
skribilo.scm
slang.scm
smalltalk.scm
sml.scm
speech.scm
sphinx.scm
spice.scm
sqlite.scm
squirrel.scm
ssh.scm
sssd.scm
stalonetray.scm
statistics.scm gnu: r-rcpparmadillo: Update to 0.9.860.2.0. 2020-04-14 16:41:01 +02:00
stb.scm
storage.scm
suckless.scm
swig.scm
sync.scm
syncthing.scm gnu: go-github-com-audriusbutkevicius-pfilter: Update to 0.0.5. 2020-04-12 09:12:43 +03:00
syndication.scm
synergy.scm
task-management.scm
tbb.scm
tcl.scm
telephony.scm gnu: commoncpp: Add support for gnu updater. 2020-04-22 23:34:20 +03:00
terminals.scm
terraform.scm
tex.scm gnu: Add texlive-inconsolata. 2020-04-27 10:45:51 +02:00
texinfo.scm
text-editors.scm gnu: fe: Fix grammar "allows to fold" to "folds". 2020-04-12 13:04:44 -07:00
textutils.scm
time.scm
tls.scm gnu: OpenSSL: Update to 1.1.1g [fixes CVE-2020-1967]. 2020-04-21 16:03:29 -04:00
tmux.scm
tor.scm
toys.scm
tryton.scm
tv.scm
uml.scm
unicode.scm
unrtf.scm
upnp.scm
usb-modeswitch.scm
uucp.scm
valgrind.scm
version-control.scm gnu: cgit: Update Git source code to 2.25.4. 2020-04-20 16:21:08 -04:00
video.scm gnu: Add wf-recorder. 2020-04-27 18:22:56 +02:00
vim.scm gnu: vim-asyncrun: Update to 2.7.5. 2020-04-18 22:23:48 +03:00
virtualization.scm Merge branch 'version-1.1.0' 2020-04-15 16:09:18 +02:00
visidata.scm gnu: Add visidata. 2020-04-23 07:08:07 +02:00
vnc.scm
vpn.scm gnu: Add loadable module to wireguard-linux-compat. 2020-04-26 18:24:28 -04:00
vulkan.scm
w3m.scm
wdiff.scm
web-browsers.scm gnu: Add midori. 2020-04-20 18:54:33 +02:00
web.scm gnu: java-eclipse-jetty-test-helper: Don't use unstable tarball. 2020-04-24 14:52:32 +03:00
webkit.scm gnu: webkitgtk: Update to 2.28.2. 2020-04-24 23:20:09 -04:00
wget.scm gnu: wget2: Add support for gnu updater. 2020-04-22 23:35:54 +03:00
wicd.scm
wine.scm gnu: wine-staging-patchset-data: Update to 5.6. 2020-04-12 21:20:09 +02:00
wireservice.scm
wm.scm gnu: Add sbcl-stumpwm-swm-gaps. 2020-04-27 22:21:35 +03:00
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm gnu: clipmenu: Fix hash. 2020-04-22 23:55:33 +02:00
xfce.scm gnu: xfce.scm: Sort module imports. 2020-04-20 21:32:22 +02:00
xfig.scm
xiph.scm gnu: libogg: Fix grammar of "allows to manipulate" to "manipulates". 2020-04-12 13:04:37 -07:00
xml.scm
xnee.scm
xorg.scm gnu: Add hackneyed-x11-cursors. 2020-04-26 15:32:10 -04:00
zile.scm
zwave.scm