444 lines
17 KiB
Scheme
444 lines
17 KiB
Scheme
;;; GNU Guix --- Functional package management for GNU
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;;; Copyright © 2013, 2015, 2021 Ludovic Courtès <ludo@gnu.org>
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;;; Copyright © 2015, 2020 Efraim Flashner <efraim@flashner.co.il>
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;;; Copyright © 2016 Theodoros Foradis <theodoros@foradis.org>
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;;; Copyright © 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
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;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
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;;; Copyright © 2017 Gábor Boskovits <boskovits@gmail.com>
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;;; Copyright © 2018 Mathieu Lirzin <mthl@gnu.org>
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;;; Copyright © 2020 Marius Bakke <mbakke@fastmail.com>
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;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com>
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;;; Copyright © 2020 Pjotr Prins <pjotr.guix@thebird.nl>
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;;; Copyright © 2021 Bonface Munyoki Kilyungi <me@bonfacemunyoki.com>
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;;;
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;;; This file is part of GNU Guix.
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;;;
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;;; GNU Guix is free software; you can redistribute it and/or modify it
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;;; under the terms of the GNU General Public License as published by
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;;; the Free Software Foundation; either version 3 of the License, or (at
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;;; your option) any later version.
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;;;
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;;; GNU Guix is distributed in the hope that it will be useful, but
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;;; WITHOUT ANY WARRANTY; without even the implied warranty of
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;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;;; GNU General Public License for more details.
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;;;
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;;; You should have received a copy of the GNU General Public License
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;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
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(define-module (gnu packages graphviz)
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#:use-module (guix packages)
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#:use-module (guix build-system gnu)
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#:use-module (guix build-system python)
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#:use-module (guix download)
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#:use-module (guix git-download)
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#:use-module (guix utils)
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#:use-module (guix gexp)
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#:use-module (gnu packages)
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#:use-module (gnu packages autotools)
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#:use-module (gnu packages bison)
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#:use-module (gnu packages check)
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#:use-module (gnu packages compression)
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#:use-module (gnu packages flex)
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#:use-module (gnu packages fontutils)
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#:use-module (gnu packages gd)
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#:use-module (gnu packages glib)
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#:use-module (gnu packages gnome)
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#:use-module (gnu packages gtk)
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#:use-module (gnu packages guile)
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#:use-module (gnu packages image)
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#:use-module (gnu packages perl)
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#:use-module (gnu packages pkg-config)
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#:use-module (gnu packages python)
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#:use-module (gnu packages python-check)
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#:use-module (gnu packages python-xyz)
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#:use-module (gnu packages sphinx)
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#:use-module (gnu packages swig)
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#:use-module (gnu packages tcl)
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#:use-module (gnu packages tex)
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#:use-module (gnu packages xml)
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#:use-module (gnu packages xorg)
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#:use-module ((guix licenses) #:prefix license:))
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(define-public graphviz
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(package
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(name "graphviz")
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(version "2.48.0")
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(source (origin
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(method url-fetch)
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(uri (string-append "https://gitlab.com/api/v4/projects/4207231"
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"/packages/generic/graphviz-releases/"
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version "/graphviz-" version ".tar.xz"))
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(sha256
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(base32
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"0lgv508zyfdv4wl95avaj58nmjhbvb5za65nhrkl5nn818ayvggn"))))
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(build-system gnu-build-system)
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(arguments
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;; FIXME: rtest/rtest.sh is a ksh script (!). Add ksh as an input.
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(list #:tests? #f
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#:phases
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#~(modify-phases %standard-phases
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(add-after 'install 'move-docs
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((out (assoc-ref outputs "out"))
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(doc (assoc-ref outputs "doc")))
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(mkdir-p (string-append doc "/share/graphviz"))
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(rename-file (string-append out "/share/graphviz/doc")
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(string-append doc "/share/graphviz/doc")))))
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(add-after 'move-docs 'move-guile-bindings
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(lambda* (#:key outputs #:allow-other-keys)
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(let* ((out (assoc-ref outputs "out"))
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(lib (string-append out "/lib"))
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(extdir (string-append lib "/guile/"
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#$(version-major+minor
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(package-version
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(this-package-input "guile")))
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"/extensions")))
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(mkdir-p extdir)
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(rename-file (string-append
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lib "/graphviz/guile/libgv_guile.so")
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(string-append extdir
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"/libgv_guile.so"))))))))
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(inputs
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`(("libXrender" ,libxrender)
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("libX11" ,libx11)
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("gts" ,gts)
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("gd" ,gd)
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("guile" ,guile-3.0) ;Guile bindings
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("pango" ,pango)
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("fontconfig" ,fontconfig)
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("freetype" ,freetype)
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("libltdl" ,libltdl)
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("libXaw" ,libxaw)
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("expat" ,expat)
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("libjpeg" ,libjpeg-turbo)
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("libpng" ,libpng)))
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(native-inputs
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`(("bison" ,bison)
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("swig" ,swig)
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("pkg-config" ,pkg-config)))
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(outputs '("out" "doc")) ; 5 MiB of html + pdfs
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(home-page "https://www.graphviz.org/")
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(synopsis "Graph visualization software")
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(description
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"Graphviz is a graph visualization tool suite. Graph visualization is a
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way of representing structural information as diagrams of abstract graphs and
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networks. It has important applications in networking, bioinformatics,
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software engineering, database and web design, machine learning, and in visual
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interfaces for other technical domains.")
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(license license:epl1.0)))
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;; Older Graphviz needed for pygraphviz. See
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;; https://github.com/pygraphviz/pygraphviz/issues/175
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(define-public graphviz-2.38
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;; This commit corresponds to the changelog change for version 2.38.0.
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;; There are no tags.
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(let ((commit "f54ac2c9313ae80ccf76ef4ac6aa9be820a23126")
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(revision "1"))
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(package (inherit graphviz)
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(name "graphviz")
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(version (git-version "2.38.0" revision commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://gitlab.com/graphviz/graphviz.git")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1vjg308gflmi1khgjmcj431cnkrlv12bg4cqah39mwhny92jy92x"))))
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(arguments
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(substitute-keyword-arguments (package-arguments graphviz)
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((#:phases phases)
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#~(modify-phases #$phases
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(add-after 'unpack 'prepare-bootstrap
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(lambda _
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(substitute* "autogen.sh"
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(("/bin/sh") (which "sh"))
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(("\\$GRAPHVIZ_VERSION_DATE") "0"))
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(setenv "CONFIG_SHELL" (which "sh"))
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(setenv "SHELL" (which "sh"))
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(map make-file-writable (find-files "." ".*"))
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#t))
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(replace 'bootstrap
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(lambda _
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(invoke (which "sh") "autogen.sh" "NOCONFIG") #t))))))
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(native-inputs
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`(("autoconf" ,autoconf)
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("automake" ,automake)
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("libtool" ,libtool)
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("flex" ,flex)
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("perl" ,perl)
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("tcl" ,tcl)
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,@(package-native-inputs graphviz))))))
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(define-public python-graphviz
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(package
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(name "python-graphviz")
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(version "0.13.2")
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(source (origin
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(method url-fetch)
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(uri (pypi-uri "graphviz" version ".zip"))
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(sha256
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(base32
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"009alrilzx0v7kl41khbq7k6k8b8pxyvbsi1b1ai933f6kpbxb30"))))
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(build-system python-build-system)
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(arguments
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'(#:phases (modify-phases %standard-phases
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(replace 'check
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(lambda* (#:key tests #:allow-other-keys)
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(if tests
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(invoke "pytest" "-vv")
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(format #t "test suite not run~%"))
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#t)))))
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(native-inputs
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`(("unzip" ,unzip)
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;; For tests.
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("graphviz" ,graphviz)
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("python-mock" ,python-mock)
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("python-pytest" ,python-pytest)
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("python-pytest-cov" ,python-pytest-cov)
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("python-pytest-mock" ,python-pytest-mock)))
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(home-page "https://github.com/xflr6/graphviz")
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(synopsis "Simple Python interface for Graphviz")
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(description
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"This package provides a simple Python interface for the Graphviz graph
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visualization tool suite.")
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(license license:expat)))
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(define-public python2-graphviz
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(package-with-python2 python-graphviz))
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(define-public python-pygraphviz
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(package
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(name "python-pygraphviz")
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(version "1.7")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/pygraphviz/pygraphviz")
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(commit (string-append "pygraphviz-" version))))
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(file-name (string-append "pygraphviz-" version "-checkout"))
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(sha256
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(base32
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"0jqc3dzy9n0hn3b99zq8jp53901zpjzvvi5ns5mbaxg8kdrb1lfx"))))
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(build-system python-build-system)
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(inputs
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`(("graphviz" ,graphviz)))
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(native-inputs
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`(("python-nose" ,python-nose)
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("python-mock" ,python-mock)
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("python-pytest" ,python-pytest)
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("python-doctest-ignore-unicode" ,python-doctest-ignore-unicode)))
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(home-page "https://pygraphviz.github.io")
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(synopsis "Python interface to Graphviz")
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(description "PyGraphviz is a Python interface to the Graphviz graph
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layout and visualization package. With PyGraphviz you can create, edit, read,
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write, and draw graphs using Python to access the Graphviz graph data
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structure and layout algorithms.")
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(license license:bsd-3)))
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(define-public python-uqbar
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(package
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(name "python-uqbar")
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(version "0.5.1")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/josiah-wolf-oberholtzer/uqbar")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0413nyhd8z8v3lvsgaghhafnyxg90fi1q80j1kbl21gpmpnc9a7n"))))
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(build-system python-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'patch
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(lambda _
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(substitute* "setup.py"
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;; Latest versions of sphink-rtd-theme require npm to build.
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(("sphinx-rtd-theme >= 0.4.0") "sphinx-rtd-theme >= 0.2.4")
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(("black == 19.10b0") "black >= 19.10b0"))
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#t))
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(replace 'check
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(lambda* (#:key tests? #:allow-other-keys)
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(when tests?
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(invoke "python" "-m" "pytest" "tests"))
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#t)))))
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(native-inputs
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`(("graphviz" ,graphviz)
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("python-flake8" ,python-flake8)
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("python-isort" ,python-isort)
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("python-mypy" ,python-mypy)
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("python-pytest" ,python-pytest)
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("python-pytest-cov" ,python-pytest-cov)))
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(propagated-inputs
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`(("python-black" ,python-black)
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("python-sphinx" ,python-sphinx)
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("python-sphinx-rtd-theme" ,python-sphinx-rtd-theme)
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("python-unidecode" ,python-unidecode)))
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(home-page "https://github.com/josiah-wolf-oberholtzer/uqbar")
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(synopsis "Tools for building documentation with Sphinx, Graphviz and LaTeX")
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(description
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"This package contains tools for building documentation with Sphinx,
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Graphviz and LaTeX.")
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(license license:expat)))
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(define-public gts
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(package
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(name "gts")
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(version "0.7.6")
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(source (origin
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(method url-fetch)
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(uri (string-append "mirror://sourceforge/gts/gts/" version
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"/gts-" version ".tar.gz"))
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(sha256
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(base32
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"07mqx09jxh8cv9753y2d2jsv7wp8vjmrd7zcfpbrddz3wc9kx705"))))
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(build-system gnu-build-system)
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(arguments
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'(#:phases
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(modify-phases %standard-phases
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(add-before 'check 'pre-check
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(lambda _
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(chmod "test/boolean/test.sh" #o777)
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#t)))
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;; Some data files used by the test suite are missing.
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;; See <http://sourceforge.net/p/gts/bugs/41/>.
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#:tests? #f))
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(native-inputs
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`(("pkg-config" ,pkg-config)))
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(propagated-inputs
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;; The gts.pc file has glib-2.0 as required.
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`(("glib" ,glib)))
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(home-page "http://gts.sourceforge.net/")
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;; Note: Despite the name, this is not official GNU software.
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(synopsis "Triangulated Surface Library")
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(description
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"Library intended to provide a set of useful functions to deal with
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3D surfaces meshed with interconnected triangles.")
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(license license:lgpl2.0+)))
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(define-public xdot
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(package
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(name "xdot")
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(version "1.1")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "xdot" version))
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(sha256
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(base32
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"0cr4rh7dz4dfzyxrk5pzhm0d15gkrgkfp3i5lw178xy81pc56p71"))))
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(build-system python-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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;; We wrap xdot, so that we don't propagate gtk+ and graphviz
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(add-after 'install 'wrap
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(lambda* (#:key inputs outputs #:allow-other-keys)
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(wrap-program (string-append (assoc-ref outputs "out") "/bin/xdot")
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`("GI_TYPELIB_PATH" ":" prefix
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(,(string-append
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(assoc-ref inputs "gtk+") "/lib/girepository-1.0"
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":" (assoc-ref inputs "pango") "/lib/girepository-1.0"
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":" (assoc-ref inputs "gdk-pixbuf") "/lib/girepository-1.0"
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":" (assoc-ref inputs "atk") "/lib/girepository-1.0")))
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`("PATH" ":" prefix
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(,(dirname (search-input-file inputs "bin/dot"))))))))))
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(inputs
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`(("atk" ,atk)
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("gdk-pixbuf" ,gdk-pixbuf+svg)
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("graphviz" ,graphviz)
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("gtk+" ,gtk+)
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("python-pycairo" ,python-pycairo)
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("python-pygobject" ,python-pygobject)))
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(home-page "https://pypi.org/project/xdot/")
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(synopsis "Interactive viewer for graphviz dot files")
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(description "Xdot is an interactive viewer for graphs written in
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@code{graphviz}’s dot language. Internally, it uses the xdot output format as
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an intermediate format, and @code{gtk} and @code{cairo} for rendering. Xdot
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can be used either as a standalone application, or as a Python library.")
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(license license:lgpl3+)))
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(define-public python-pydot
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(package
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(name "python-pydot")
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(version "1.4.1")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "pydot" version))
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(sha256
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(base32
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"00az4cbf8bv447lkk9xi6pjm7gcc7ia33y4pm71fwfwis56rv76l"))
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(patches (search-patches "python-pydot-regression-test.patch"))))
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(build-system python-build-system)
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(arguments
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'(#:phases
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||
(modify-phases %standard-phases
|
||
(replace 'check
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||
;; Taken from .travis.yaml
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||
(lambda* (#:key tests? inputs outputs #:allow-other-keys)
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||
(when tests?
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(add-installed-pythonpath inputs outputs)
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(with-directory-excursion "test"
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(invoke "python" "pydot_unittest.py")))
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#t)))))
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(native-inputs
|
||
;; For tests.
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||
`(("graphviz" ,graphviz)
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("python-chardet" ,python-chardet)))
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||
(propagated-inputs
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||
`(("python-pyparsing" ,python-pyparsing)))
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||
(home-page "https://github.com/pydot/pydot")
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||
(synopsis "Python interface to Graphviz's DOT language")
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||
(description
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||
"Pydot provides an interface to create, handle, modify and process
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graphs in Graphviz's DOT language, written in pure Python.")
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||
(license license:expat)))
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(define-public python2-pydot
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(package-with-python2 python-pydot))
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(define-public dot2tex
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(package
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(name "dot2tex")
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(version "2.11.3")
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(source (origin
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(method url-fetch)
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(uri (pypi-uri "dot2tex" version))
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(sha256
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||
(base32
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"1kp77wiv7b5qib82i3y3sn9r49rym43aaqm5aw1bwnzfbbq2m6i9"))))
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||
(build-system python-build-system)
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||
(arguments
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||
`(#:python ,python-2))
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||
(inputs
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||
`(("texlive-latex-preview" ,texlive-latex-preview)
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||
("graphviz" ,graphviz)))
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||
(propagated-inputs
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`(("python-pyparsing" ,python2-pyparsing)))
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(home-page "https://github.com/kjellmf/dot2tex")
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||
(synopsis "Graphviz to LaTeX converter")
|
||
(description
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||
"The purpose of @code{dot2tex} is to give graphs generated by Graphviz a
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more LaTeX friendly look and feel. This is accomplished by converting
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@code{xdot} output from Graphviz to a series of PSTricks or PGF/TikZ commands.
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This approach allows:
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@itemize @bullet
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@item Typesetting labels with LaTeX, allowing mathematical notation
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@item Using native PSTricks and PGF/TikZ commands for drawing arrows
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@item Using backend specific styles to customize the output
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@end itemize")
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(license license:expat)))
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