* gnu/packages/admin.scm (wpa-supplicant-minimal): Substitute the simpler INSTALL-FILE for COPY-FILE when invoked with redundant arguments. * gnu/packages/bioinformatics.scm (couger, aragorn, express-beta-diversity, edirect, fasttree, rsem, samtools-0.1): Likewise. * gnu/packages/code.scm (withershins): Likewise. * gnu/packages/conky.scm (conky): Likewise. * gnu/packages/debug.scm (delta, american-fuzzy-lop): Likewise. * gnu/packages/emacs.scm (emacs-mit-scheme-doc): Likewise. * gnu/packages/engineering.scm (librecad): Likewise.
		
			
				
	
	
		
			338 lines
		
	
	
	
		
			15 KiB
		
	
	
	
		
			Scheme
		
	
	
	
	
	
			
		
		
	
	
			338 lines
		
	
	
	
		
			15 KiB
		
	
	
	
		
			Scheme
		
	
	
	
	
	
| ;;; GNU Guix --- Functional package management for GNU
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| ;;; Copyright © 2014, 2015, 2016 Eric Bavier <bavier@member.fsf.org>
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| ;;;
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| ;;; This file is part of GNU Guix.
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| ;;;
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| ;;; GNU Guix is free software; you can redistribute it and/or modify it
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| ;;; under the terms of the GNU General Public License as published by
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| ;;; the Free Software Foundation; either version 3 of the License, or (at
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| ;;; your option) any later version.
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| ;;;
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| ;;; GNU Guix is distributed in the hope that it will be useful, but
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| ;;; WITHOUT ANY WARRANTY; without even the implied warranty of
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| ;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
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| ;;; GNU General Public License for more details.
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| ;;;
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| ;;; You should have received a copy of the GNU General Public License
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| ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
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| 
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| (define-module (gnu packages debug)
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|   #:use-module (guix packages)
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|   #:use-module (guix licenses)
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|   #:use-module (guix download)
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|   #:use-module (guix git-download)
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|   #:use-module (guix utils)
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|   #:use-module (guix build-system gnu)
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|   #:use-module (gnu packages autotools)
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|   #:use-module (gnu packages base)
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|   #:use-module (gnu packages bash)
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|   #:use-module (gnu packages flex)
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|   #:use-module (gnu packages golang)
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|   #:use-module (gnu packages indent)
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|   #:use-module (gnu packages llvm)
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|   #:use-module (gnu packages perl)
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|   #:use-module (gnu packages pretty-print)
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|   #:use-module (gnu packages qemu)
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|   #:use-module (ice-9 match)
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|   #:use-module (srfi srfi-1))
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| 
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| (define-public delta
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|   (package
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|     (name "delta")
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|     (version "2006.08.03")
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|     (source
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|      (origin
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|       (method url-fetch)
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|       (uri (list
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|             (string-append "http://ftp.de.debian.org/debian/pool/main/d/delta/"
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|                            "delta_" version ".orig.tar.gz")
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|             ;; This uri seems to send guix download into an infinite loop
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|             (string-append "http://delta.tigris.org/files/documents/3103/"
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|                            "33566/delta-" version ".tar.gz")))
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|       (sha256
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|        (base32
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|         "184wh35pf2ddx97319s6sgkzpz48xxkbwzcjpycv009bm53lh61q"))))
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|     (build-system gnu-build-system)
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|     (inputs                             ;Installed programs are perl scripts
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|      `(("perl" ,perl)))
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|     (arguments
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|      `(#:phases
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|        (alist-replace
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|         'install
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|         (lambda* (#:key outputs #:allow-other-keys)
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|           ;; Makefile contains no install target
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|           (let* ((out (assoc-ref outputs "out"))
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|                  (bin (string-append out "/bin"))
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|                  (doc (string-append out "/share/doc/delta-" ,version)))
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|             (begin
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|               (mkdir-p bin)
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|               (mkdir-p doc)
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|               (for-each (lambda (h)
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|                           (install-file h doc))
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|                         `("License.txt" ,@(find-files "www" ".*\\.html")))
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|               (for-each (lambda (b)
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|                           (install-file b bin))
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|                         `("delta" "multidelta" "topformflat")))))
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|         (alist-delete 'configure %standard-phases))))
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|     (home-page "http://delta.tigris.org/")
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|     (synopsis "Heuristical file minimizer")
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|     (description
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|      "Delta assists you in minimizing \"interesting\" files subject to a test
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| of their interestingness.  A common such situation is when attempting to
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| isolate a small failure-inducing substring of a large input that causes your
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| program to exhibit a bug.")
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|     ;; See License.txt, which is a bsd-3 license, despite the project's
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|     ;; home-page pointing to a bsd-2 license.
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|     (license bsd-3)))
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| 
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| (define-public c-reduce
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|   (package
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|     (name "c-reduce")
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|     (version "2.5.0")
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|     (source
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|      (origin
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|       (method url-fetch)
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|       (uri (list
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|             (string-append "http://embed.cs.utah.edu/creduce/"
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|                            "creduce-" version ".tar.gz")))
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|       (sha256
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|        (base32
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|         "1r23lhzq3dz8vi2dalxk5las8bf0av2w94hxxbs61pr73m77ik9d"))))
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|     (build-system gnu-build-system)
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|     (inputs
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|      `(("astyle"          ,astyle)
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|        ("llvm"            ,llvm)
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|        ("clang"           ,clang)
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|        ("flex"            ,flex)
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|        ("indent"          ,indent)
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|        ("perl"            ,perl)
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|        ("exporter-lite"   ,perl-exporter-lite)
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|        ("file-which"      ,perl-file-which)
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|        ("getopt-tabular"  ,perl-getopt-tabular)
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|        ("regex-common"    ,perl-regexp-common)
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|        ("sys-cpu"         ,perl-sys-cpu)
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|        ("term-readkey"    ,perl-term-readkey)))
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|     (arguments
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|      `(#:phases (alist-cons-after
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|                  'install 'set-load-paths
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|                  (lambda* (#:key inputs outputs #:allow-other-keys)
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|                    ;; Tell creduce where to find the perl modules it needs.
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|                    (let* ((out (assoc-ref outputs "out"))
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|                           (prog (string-append out "/bin/creduce")))
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|                      (wrap-program
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|                       prog
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|                       `("PERL5LIB" ":" prefix
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|                         ,(map (lambda (p)
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|                                 (string-append (assoc-ref inputs p)
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|                                                "/lib/perl5/site_perl/"
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|                                                ,(package-version perl)))
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|                               '("term-readkey"    "exporter-lite"
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|                                 "file-which"      "getopt-tabular"
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|                                 "regex-common"    "sys-cpu"))))))
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|                  %standard-phases)))
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|     (home-page "http://embed.cs.utah.edu/creduce")
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|     (synopsis "Reducer for interesting code")
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|     (description
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|      "C-Reduce is a tool that takes a large C or C++ program that has a
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| property of interest (such as triggering a compiler bug) and automatically
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| produces a much smaller C/C++ program that has the same property.  It is
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| intended for use by people who discover and report bugs in compilers and other
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| tools that process C/C++ code.")
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|     (license ncsa)))
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| 
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| (define qemu-2.3.0
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|   (package
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|     (inherit qemu-minimal)
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|     (version "2.3.0")
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|     (source (origin
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|               (method url-fetch)
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|               (uri (string-append
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|                     "http://wiki.qemu-project.org/download/qemu-"
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|                     version ".tar.bz2"))
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|               (sha256
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|                (base32
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|                 "120m53c3p28qxmfzllicjzr8syjv6v4d9rsyrgkp7gnmcgvvgfmn"))))
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|     (arguments
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|      ;; XXX: Disable tests because of GTester's rejection of duplicate test
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|      ;; names, which wasn't addressed in this version of QEMU.
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|      `(#:tests? #f
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|        ,@(substitute-keyword-arguments (package-arguments qemu-minimal)
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|            ((#:phases phases)
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|             ;; We disable the tests so we skip the phase disabling the qga test.
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|             `(modify-phases ,phases (delete 'disable-test-qga))))))))
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| 
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| (define-public american-fuzzy-lop
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|   (let ((machine (match (or (%current-target-system)
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|                             (%current-system))
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|                    ("x86_64-linux"   "x86_64")
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|                    ("i686-linux"     "i386")
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|                    ;; Prevent errors when querying this package on unsupported
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|                    ;; platforms, e.g. when running "guix package --search="
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|                    (_                "UNSUPPORTED"))))
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|     (package
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|       (name "american-fuzzy-lop")
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|       (version "2.15b")             ;It seems all releases have the 'b' suffix
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|       (source
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|        (origin
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|          (method url-fetch)
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|          (uri (string-append "http://lcamtuf.coredump.cx/afl/releases/"
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|                              "afl-" version ".tgz"))
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|          (sha256
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|           (base32
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|            "04n2jfkchpz6a07w694b0im1vcmc3220ryqcaasa7vix7784wzs2"))))
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|       (build-system gnu-build-system)
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|       (inputs
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|        `(("custom-qemu"
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|           ;; The afl-qemu tool builds qemu 2.3.0 with a few patches applied.
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|           ,(package (inherit qemu-2.3.0)
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|              (name "afl-qemu")
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|              (inputs
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|               `(("afl-src" ,source)
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|                 ,@(package-inputs qemu-2.3.0)))
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|              ;; afl only supports using a single afl-qemu-trace executable, so
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|              ;; we only build qemu for the native target.
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|              (arguments
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|               `(#:modules ((srfi srfi-1)
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|                            ,@%gnu-build-system-modules)
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|                 ,@(substitute-keyword-arguments (package-arguments qemu-2.3.0)
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|                     ((#:configure-flags config-flags)
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|                      ``(,(string-append "--target-list=" ,machine "-linux-user")
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|                         ,@(remove (λ (f) (string-prefix? "--target-list=" f))
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|                                   ,config-flags)))
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|                     ((#:phases qemu-phases)
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|                      `(modify-phases ,qemu-phases
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|                         (add-after
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|                          'unpack 'apply-afl-patches
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|                          (lambda* (#:key inputs #:allow-other-keys)
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|                            (let* ((afl-dir (string-append "afl-" ,version))
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|                                   (patch-dir
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|                                    (string-append afl-dir
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|                                                   "/qemu_mode/patches")))
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|                              (unless (zero?
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|                                       (system* "tar" "xf"
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|                                                (assoc-ref inputs "afl-src")))
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|                                (error "tar failed to unpack afl-src"))
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|                              (install-file (string-append patch-dir
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|                                                           "/afl-qemu-cpu-inl.h")
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|                                            ".")
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|                              (copy-file (string-append afl-dir "/config.h")
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|                                         "./afl-config.h")
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|                              (install-file (string-append afl-dir "/types.h")
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|                                            ".")
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|                              (substitute* "afl-qemu-cpu-inl.h"
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|                                (("\\.\\./\\.\\./config.h") "afl-config.h"))
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|                              (substitute* (string-append patch-dir
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|                                                          "/cpu-exec.diff")
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|                                (("\\.\\./patches/") ""))
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|                              (every (lambda (patch-file)
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|                                       (zero? (system* "patch" "--force" "-p1"
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|                                                       "--input" patch-file)))
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|                                     (find-files patch-dir
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|                                                 "\\.diff$"))))))))))))))
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|       (arguments
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|        `(#:make-flags (list (string-append "PREFIX=" (assoc-ref %outputs "out"))
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|                             "CC=gcc")
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|          #:phases (modify-phases %standard-phases
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|                     (delete 'configure)
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|                     (add-after
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|                      ;; TODO: Build and install the afl-llvm tool.
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|                      'install 'install-qemu
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|                      (lambda* (#:key inputs outputs #:allow-other-keys)
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|                        (let ((qemu (assoc-ref inputs "custom-qemu"))
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|                              (out  (assoc-ref outputs "out")))
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|                          (symlink (string-append qemu "/bin/qemu-" ,machine)
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|                                   (string-append out "/bin/afl-qemu-trace"))
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|                          #t)))
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|                     (delete 'check))))
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|       (supported-systems (fold delete
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|                                %supported-systems
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|                                '("armhf-linux" "mips64el-linux")))
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|       (home-page "http://lcamtuf.coredump.cx/afl")
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|       (synopsis "Security-oriented fuzzer")
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|       (description
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|        "American fuzzy lop is a security-oriented fuzzer that employs a novel
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| type of compile-time instrumentation and genetic algorithms to automatically
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| discover clean, interesting test cases that trigger new internal states in the
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| targeted binary.  This substantially improves the functional coverage for the
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| fuzzed code.  The compact synthesized corpora produced by the tool are also
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| useful for seeding other, more labor- or resource-intensive testing regimes
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| down the road.")
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|       (license asl2.0))))
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| 
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| (define-public stress-make
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|   (let ((commit "506e6cfd98d165f22bee91c408b7c20117a682c4")
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|         (revision "0"))                 ;No official source distribution
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|     (package
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|       (name "stress-make")
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|       (version (string-append "1.0-" revision "." (string-take commit 7)))
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|       (source
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|        (origin
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|          (method git-fetch)
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|          (uri (git-reference
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|                (url "https://github.com/losalamos/stress-make.git")
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|                (commit commit)))
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|          (file-name (string-append name "-" version "-checkout"))
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|          (sha256
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|           (base32
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|            "1j330yqhc7plwin04qxbh8afpg5nfnw1xvnmh8rk6mmqg9w6ik70"))))
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|       (build-system gnu-build-system)
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|       (native-inputs
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|        `(("autoconf" ,autoconf)
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|          ("automake" ,automake)
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|          ("go" ,go)))
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|       (inputs
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|        `(("make-source" ,(package-source gnu-make))))
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|       (arguments
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|        ;; stress-make's configure script insists on having a tarball and does
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|        ;; not accept a directory name instead.  To let the gnu-build-system's
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|        ;; patch-* phases work properly, we unpack the source first, then
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|        ;; repack before the configure phase.
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|        `(#:configure-flags '("--with-make-tar=./make.tar.xz")
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|          #:phases
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|          (modify-phases %standard-phases
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|            (add-after 'unpack 'unpack-make
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|              (lambda* (#:key inputs #:allow-other-keys)
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|                (zero? (system* "tar" "xf" (assoc-ref inputs "make-source")))))
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|            (add-before 'configure 'repack-make
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|              (lambda _
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|                (zero? (system* "tar" "cJf" "./make.tar.xz"
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|                                (string-append "make-"
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|                                               ,(package-version gnu-make))))))
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|            (add-before 'configure 'bootstrap
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|              (lambda _
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|                (zero? (system* "autoreconf" "-vfi")))))))
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|       (home-page "https://github.com/losalamos/stress-make")
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|       (synopsis "Expose race conditions in Makefiles")
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|       (description
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|        "Stress Make is a customized GNU Make that explicitely manages the order
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| in which concurrent jobs are run to provoke erroneous behavior into becoming
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| manifest.  It can run jobs in the order in which they're launched, in backwards
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| order, or in random order.  The thought is that if code builds correctly with
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| Stress Make, then it is likely that the @code{Makefile} contains no race
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| conditions.")
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|       ;; stress-make wrapper is under BSD-3-modifications-must-be-indicated,
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|       ;; and patched GNU Make is under its own license.
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|       (license (list (non-copyleft "COPYING.md")
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|                      (package-license gnu-make))))))
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| 
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| (define-public zzuf
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|   (package
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|     (name "zzuf")
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|     (version "0.15")
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|     (source
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|      (origin
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|        (method url-fetch)
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|        (uri (string-append
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|              "https://github.com/samhocevar/zzuf/releases/download/v"
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|              version "/" name "-" version ".tar.gz"))
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|        (file-name (string-append name "-" version ".tar.gz"))
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|        (sha256
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|         (base32
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|          "1mpzjaksc2qg2hzqflf39pl06p53qam2dn3hkhkcv6p00d2n4kx3"))))
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|     (build-system gnu-build-system)
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|     (home-page "https://github.com/samhocevar/zzuf")
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|     (synopsis "Transparent application input fuzzer")
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|     (description "Zzuf is a transparent application input fuzzer.  It works by
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| intercepting file operations and changing random bits in the program's
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| input.  Zzuf's behaviour is deterministic, making it easy to reproduce bugs.")
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|     (license (non-copyleft "http://www.wtfpl.net/txt/copying/"))))
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