444 lines
18 KiB
Scheme
444 lines
18 KiB
Scheme
;;; GNU Guix --- Functional package management for GNU
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;;; Copyright © 2012, 2013, 2014, 2015 Andreas Enge <andreas@enge.fr>
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;;; Copyright © 2013, 2015 Ludovic Courtès <ludo@gnu.org>
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;;; Copyright © 2014 Mark H Weaver <mhw@netris.org>
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;;;
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;;; This file is part of GNU Guix.
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;;;
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;;; GNU Guix is free software; you can redistribute it and/or modify it
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;;; under the terms of the GNU General Public License as published by
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;;; the Free Software Foundation; either version 3 of the License, or (at
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;;; your option) any later version.
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;;;
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;;; GNU Guix is distributed in the hope that it will be useful, but
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;;; WITHOUT ANY WARRANTY; without even the implied warranty of
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;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;;; GNU General Public License for more details.
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;;;
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;;; You should have received a copy of the GNU General Public License
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;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
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(define-module (gnu packages algebra)
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#:use-module (gnu packages)
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#:use-module (gnu packages compression)
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#:use-module (gnu packages multiprecision)
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#:use-module (gnu packages mpi)
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#:use-module (gnu packages perl)
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#:use-module (gnu packages readline)
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#:use-module (gnu packages flex)
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#:use-module (gnu packages xorg)
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#:use-module ((guix licenses) #:prefix license:)
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#:use-module (guix packages)
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#:use-module (guix download)
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#:use-module (guix build-system gnu)
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#:use-module (guix build-system cmake)
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#:use-module (guix utils))
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(define-public mpfrcx
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(package
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(name "mpfrcx")
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(version "0.4.2")
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(source (origin
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(method url-fetch)
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(uri (string-append
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"http://www.multiprecision.org/mpfrcx/download/mpfrcx-"
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version ".tar.gz"))
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(sha256
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(base32
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"0grw66b255r574lvll1bqccm5myj2m8ajzsjaygcyq9zjnnbnhhy"))))
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(build-system gnu-build-system)
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(propagated-inputs
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`(("gmp" ,gmp)
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("mpfr" ,mpfr)
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("mpc" ,mpc))) ; Header files are included by mpfrcx.h.
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(synopsis "Arithmetic of polynomials over arbitrary precision numbers")
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(description
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"Mpfrcx is a library for the arithmetic of univariate polynomials over
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arbitrary precision real (mpfr) or complex (mpc) numbers, without control
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on the rounding. For the time being, only the few functions needed to
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implement the floating point approach to complex multiplication are
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implemented. On the other hand, these comprise asymptotically fast
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multiplication routines such as Toom–Cook and the FFT.")
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(license license:lgpl2.1+)
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(home-page "http://mpfrcx.multiprecision.org/")))
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(define-public cm
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(package
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(name "cm")
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(version "0.2.1")
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(source (origin
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(method url-fetch)
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(uri (string-append
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"http://www.multiprecision.org/cm/download/cm-"
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version ".tar.gz"))
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(sha256
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(base32
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"1r5dx5qy0ka2sq26n9jll9iy4sjqg0jp5r3jnbjhpgxvmj8jbhq8"))))
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(build-system gnu-build-system)
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(propagated-inputs
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`(("mpfrcx" ,mpfrcx)
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("zlib" ,zlib))) ; Header files included from cm_common.h.
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(inputs
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`(("pari-gp" ,pari-gp)))
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(synopsis "CM constructions for elliptic curves")
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(description
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"The CM software implements the construction of ring class fields of
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imaginary quadratic number fields and of elliptic curves with complex
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multiplication via floating point approximations. It consists of libraries
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that can be called from within a C program and of executable command
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line applications.")
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(license license:gpl2+)
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(home-page "http://cm.multiprecision.org/")))
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(define-public fplll
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(package
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(name "fplll")
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(version "4.0.4")
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(source (origin
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(method url-fetch)
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(uri (string-append
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"http://perso.ens-lyon.fr/damien.stehle/fplll/libfplll-"
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version ".tar.gz"))
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(sha256 (base32
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"1cbiby7ykis4z84swclpysrljmqhfcllpkcbll1m08rzskgb1a6b"))))
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(build-system gnu-build-system)
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(inputs `(("gmp" ,gmp)
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("mpfr" ,mpfr)))
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(synopsis "Library for LLL-reduction of euclidean lattices")
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(description
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"fplll LLL-reduces euclidean lattices. Since version 3, it can also
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solve the shortest vector problem.")
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(license license:lgpl2.1+)
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(home-page "http://perso.ens-lyon.fr/damien.stehle/fplll/")))
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(define-public pari-gp
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(package
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(name "pari-gp")
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(version "2.7.5")
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(source (origin
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(method url-fetch)
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(uri (string-append
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"http://pari.math.u-bordeaux.fr/pub/pari/unix/pari-"
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version ".tar.gz"))
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(sha256
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(base32
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"0c8l83a0gjq73r9hndsrzkypwxvnnm4pxkkzbg6jm95m80nzwh11"))))
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(build-system gnu-build-system)
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(inputs `(("gmp" ,gmp)
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("libx11" ,libx11)
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("perl" ,perl)
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("readline" ,readline)))
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(arguments
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'(#:make-flags '("gp")
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;; FIXME: building the documentation requires tex; once this is
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;; available, replace "gp" by "all"
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#:test-target "dobench"
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#:phases
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(alist-replace
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'configure
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((out (assoc-ref outputs "out")))
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(zero?
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(system* "./Configure" (string-append "--prefix=" out)))))
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%standard-phases)))
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(synopsis "PARI/GP, a computer algebra system for number theory")
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(description
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"PARI/GP is a widely used computer algebra system designed for fast
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computations in number theory (factorisations, algebraic number theory,
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elliptic curves...), but it also contains a large number of other useful
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functions to compute with mathematical entities such as matrices,
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polynomials, power series, algebraic numbers, etc., and a lot of
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transcendental functions.
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PARI is also available as a C library to allow for faster computations.")
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(license license:gpl2+)
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(home-page "http://pari.math.u-bordeaux.fr/")))
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(define-public gp2c
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(package
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(name "gp2c")
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(version "0.0.9pl3")
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(source (origin
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(method url-fetch)
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(uri (string-append
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"http://pari.math.u-bordeaux.fr/pub/pari/GP2C/gp2c-"
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version ".tar.gz"))
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(sha256
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(base32
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"0wbghihwlcx3w4j1la3bjf5gcrkk6lp9syw6iimqndq1f73ijlq3"))))
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(build-system gnu-build-system)
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(native-inputs `(("perl" ,perl)))
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(inputs `(("pari-gp" ,pari-gp)))
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(arguments
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'(#:configure-flags
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(list (string-append "--with-paricfg="
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(assoc-ref %build-inputs "pari-gp")
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"/lib/pari/pari.cfg"))))
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(synopsis "PARI/GP, a computer algebra system for number theory")
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(description
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"PARI/GP is a widely used computer algebra system designed for fast
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computations in number theory (factorisations, algebraic number theory,
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elliptic curves...), but it also contains a large number of other useful
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functions to compute with mathematical entities such as matrices,
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polynomials, power series, algebraic numbers, etc., and a lot of
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transcendental functions.
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PARI is also available as a C library to allow for faster computations.
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GP2C, the GP to C compiler, translates GP scripts to PARI programs.")
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(license license:gpl2)
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(home-page "http://pari.math.u-bordeaux.fr/")))
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(define-public flint
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(package
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(name "flint")
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(version "2.5.2")
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(source (origin
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(method url-fetch)
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(uri (string-append
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"http://flintlib.org/flint-"
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version ".tar.gz"))
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(sha256 (base32
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"11syazv1a8rrnac3wj3hnyhhflpqcmq02q8pqk2m6g2k6h0gxwfb"))
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(patches (map search-patch '("flint-ldconfig.patch")))))
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(build-system gnu-build-system)
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(propagated-inputs
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`(("gmp" ,gmp)
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("mpfr" ,mpfr))) ; header files from both are included by flint/arith.h
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(arguments
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`(#:parallel-tests? #f ; seems to be necessary on arm
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#:phases
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(modify-phases %standard-phases
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(replace 'configure
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(lambda* (#:key inputs outputs #:allow-other-keys)
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(let ((out (assoc-ref outputs "out"))
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(gmp (assoc-ref inputs "gmp"))
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(mpfr (assoc-ref inputs "mpfr")))
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;; do not pass "--enable-fast-install", which makes the
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;; homebrew configure process fail
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(zero? (system*
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"./configure"
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(string-append "--prefix=" out)
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(string-append "--with-gmp=" gmp)
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(string-append "--with-mpfr=" mpfr)))))))))
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(synopsis "Fast library for number theory")
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(description
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"FLINT is a C library for number theory. It supports arithmetic
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with numbers, polynomials, power series and matrices over many base
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rings, including multiprecision integers and rationals, integers
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modulo n, p-adic numbers, finite fields (prime and non-prime order)
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and real and complex numbers (via the Arb extension library).
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Operations that can be performed include conversions, arithmetic,
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GCDs, factoring, solving linear systems, and evaluating special
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functions. In addition, FLINT provides various low-level routines for
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fast arithmetic.")
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(license license:gpl2+)
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(home-page "http://flintlib.org/")))
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(define-public arb
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(package
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(name "arb")
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(version "2.7.0")
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(source (origin
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(method url-fetch)
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(uri (string-append
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"https://github.com/fredrik-johansson/arb/archive/"
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version ".tar.gz"))
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(file-name (string-append name "-" version ".tar.gz"))
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(sha256
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(base32
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"1rwkffs57v8mry63rq8l2dyw69zfs9rg5fpbfllqp3nkjnkp1fly"))))
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(build-system gnu-build-system)
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(propagated-inputs
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`(("flint" ,flint))) ; flint.h is included by arf.h
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(inputs
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`(("gmp" ,gmp)
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("mpfr" ,mpfr)))
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(arguments
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`(#:phases
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(alist-replace
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'configure
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(lambda* (#:key inputs outputs #:allow-other-keys)
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(let ((out (assoc-ref outputs "out"))
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(flint (assoc-ref inputs "flint"))
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(gmp (assoc-ref inputs "gmp"))
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(mpfr (assoc-ref inputs "mpfr")))
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;; do not pass "--enable-fast-install", which makes the
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;; homebrew configure process fail
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(zero? (system*
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"./configure"
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(string-append "--prefix=" out)
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(string-append "--with-flint=" flint)
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(string-append "--with-gmp=" gmp)
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(string-append "--with-mpfr=" mpfr)))))
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%standard-phases)))
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(synopsis "Arbitrary precision floating-point ball arithmetic")
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(description
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"Arb is a C library for arbitrary-precision floating-point ball
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arithmetic. It supports efficient high-precision computation with
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polynomials, power series, matrices and special functions over the
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real and complex numbers, with automatic, rigorous error control.")
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(license license:gpl2+)
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(home-page "http://fredrikj.net/arb/")))
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(define-public bc
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(package
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(name "bc")
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(version "1.06")
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(source (origin
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(method url-fetch)
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(uri (string-append "mirror://gnu/bc/bc-" version ".tar.gz"))
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(sha256
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(base32
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"0cqf5jkwx6awgd2xc2a0mkpxilzcfmhncdcfg7c9439wgkqxkxjf"))))
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(build-system gnu-build-system)
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(inputs `(("readline" ,readline)))
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(native-inputs `(("flex" ,flex)))
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(arguments
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'(#:phases
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(alist-replace 'configure
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(lambda* (#:key outputs #:allow-other-keys)
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;; This old `configure' script doesn't support
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;; variables passed as arguments.
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(let ((out (assoc-ref outputs "out")))
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(setenv "CONFIG_SHELL" (which "bash"))
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(zero?
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(system*
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"./configure"
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(string-append "--prefix=" out)
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;; By default, man and info pages are put in
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;; PREFIX/{man,info}, but we want them in
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;; PREFIX/share/{man,info}.
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(string-append "--mandir=" out "/share/man")
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(string-append "--infodir=" out "/share/info")))))
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%standard-phases)))
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(home-page "http://www.gnu.org/software/bc/")
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(synopsis "Arbitrary precision numeric processing language")
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(description
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"bc is an arbitrary precision numeric processing language. It includes
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an interactive environment for evaluating mathematical statements. Its
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syntax is similar to that of C, so basic usage is familiar. It also includes
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\"dc\", a reverse-polish calculator.")
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(license license:gpl2+)))
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(define-public fftw
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(package
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(name "fftw")
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(version "3.3.4")
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(source (origin
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(method url-fetch)
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(uri (string-append "ftp://ftp.fftw.org/pub/fftw/fftw-"
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version".tar.gz"))
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(sha256
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(base32
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"10h9mzjxnwlsjziah4lri85scc05rlajz39nqf3mbh4vja8dw34g"))))
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(build-system gnu-build-system)
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(arguments
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'(#:configure-flags '("--enable-shared" "--enable-openmp")
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#:phases (alist-cons-before
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'build 'no-native
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(lambda _
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;; By default '-mtune=native' is used. However, that may
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;; cause the use of ISA extensions (SSE2, etc.) that are
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;; not necessarily available on the user's machine when
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;; that package is built on a different machine.
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(substitute* (find-files "." "Makefile$")
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(("-mtune=native") "")))
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%standard-phases)))
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(native-inputs `(("perl" ,perl)))
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(home-page "http://fftw.org")
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(synopsis "Computing the discrete Fourier transform")
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(description
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"FFTW is a C subroutine library for computing the discrete Fourier
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transform (DFT) in one or more dimensions, of arbitrary input size, and of
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both real and complex data (as well as of even/odd data---i.e. the discrete
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cosine/ sine transforms or DCT/DST).")
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(license license:gpl2+)))
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(define-public fftwf
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(package (inherit fftw)
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(name "fftwf")
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(arguments
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(substitute-keyword-arguments (package-arguments fftw)
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((#:configure-flags cf)
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`(cons "--enable-float" ,cf))))
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(description
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(string-append (package-description fftw)
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" Single-precision version."))))
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(define-public fftw-openmpi
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(package (inherit fftw)
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(name "fftw-openmpi")
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(inputs
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`(("openmpi" ,openmpi)
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,@(package-inputs fftw)))
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(arguments
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||
(substitute-keyword-arguments (package-arguments fftw)
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((#:configure-flags cf)
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`(cons "--enable-mpi" ,cf))))
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(description
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(string-append (package-description fftw)
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" With OpenMPI parallelism support."))))
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(define-public eigen
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(package
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(name "eigen")
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(version "3.2.7")
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(source (origin
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(method url-fetch)
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(uri (string-append "https://bitbucket.org/eigen/eigen/get/"
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version ".tar.bz2"))
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||
(sha256
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||
(base32
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||
"0gigbjjdlw2q0gvcnyiwc6in314a647rkidk6977bwiwn88im3p5"))
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(file-name (string-append name "-" version ".tar.bz2"))
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(modules '((guix build utils)))
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(snippet
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;; There are 3 test failures in the "unsupported" directory,
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;; but maintainers say it's a known issue and it's unsupported
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;; anyway, so just skip them.
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'(substitute* "CMakeLists.txt"
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(("add_subdirectory\\(unsupported\\)")
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"# Do not build the tests for unsupported features.\n")
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;; Work around
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;; <http://eigen.tuxfamily.org/bz/show_bug.cgi?id=1114>.
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(("\"include/eigen3\"")
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"\"${CMAKE_INSTALL_PREFIX}/include/eigen3\"")))))
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(build-system cmake-build-system)
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||
(arguments
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'(;; Turn off debugging symbols to save space.
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#:build-type "Release"
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;; Use 'make check', as per
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;; <http://eigen.tuxfamily.org/index.php?title=Tests>.
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#:test-target "check"
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#:phases (modify-phases %standard-phases
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(add-before 'check 'build-tests
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(lambda _
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;; First build the tests, in parallel.
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;; See <http://eigen.tuxfamily.org/index.php?title=Tests>.
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(let* ((cores (parallel-job-count))
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(dash-j (format #f "-j~a" cores)))
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;; These variables are supposed to be honored.
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(setenv "EIGEN_MAKE_ARGS" dash-j)
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;; Use '-V' to get more details in case of test
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;; failures.
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(setenv "EIGEN_CTEST_ARGS"
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(string-append "-V " dash-j))
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(zero? (system* "make" "buildtests" dash-j))))))))
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(home-page "http://eigen.tuxfamily.org")
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(synopsis "C++ template library for linear algebra")
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(description
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"Eigen is a C++ template library for linear algebra: matrices, vectors,
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numerical solvers, and related algorithms. It provides an elegant API based
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on \"expression templates\". It is versatile: it supports all matrix sizes,
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all standard numeric types, various matrix decompositions and geometry
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features, and more.")
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;; Most of the code is MPLv2, with a few files under LGPLv2.1+ or BSD-3.
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;; See 'COPYING.README' for details.
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(license license:mpl2.0)))
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