458 lines
17 KiB
Scheme
458 lines
17 KiB
Scheme
;;; GNU Guix --- Functional package management for GNU
|
||
;;; Copyright © 2013, 2015 Ludovic Courtès <ludo@gnu.org>
|
||
;;; Copyright © 2015, 2020 Efraim Flashner <efraim@flashner.co.il>
|
||
;;; Copyright © 2016 Theodoros Foradis <theodoros@foradis.org>
|
||
;;; Copyright © 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
|
||
;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
|
||
;;; Copyright © 2017 Gábor Boskovits <boskovits@gmail.com>
|
||
;;; Copyright © 2018 Mathieu Lirzin <mthl@gnu.org>
|
||
;;; Copyright © 2020 Marius Bakke <mbakke@fastmail.com>
|
||
;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com>
|
||
;;; Copyright © 2020 Pjotr Prins <pjotr.guix@thebird.nl>
|
||
;;; Copyright © 2021 Bonface Munyoki Kilyungi <me@bonfacemunyoki.com>
|
||
;;;
|
||
;;; This file is part of GNU Guix.
|
||
;;;
|
||
;;; GNU Guix is free software; you can redistribute it and/or modify it
|
||
;;; under the terms of the GNU General Public License as published by
|
||
;;; the Free Software Foundation; either version 3 of the License, or (at
|
||
;;; your option) any later version.
|
||
;;;
|
||
;;; GNU Guix is distributed in the hope that it will be useful, but
|
||
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
|
||
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
||
;;; GNU General Public License for more details.
|
||
;;;
|
||
;;; You should have received a copy of the GNU General Public License
|
||
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
|
||
|
||
(define-module (gnu packages graphviz)
|
||
#:use-module (guix packages)
|
||
#:use-module (guix build-system gnu)
|
||
#:use-module (guix build-system python)
|
||
#:use-module (guix download)
|
||
#:use-module (guix git-download)
|
||
#:use-module (guix utils)
|
||
#:use-module (gnu packages)
|
||
#:use-module (gnu packages autotools)
|
||
#:use-module (gnu packages bison)
|
||
#:use-module (gnu packages check)
|
||
#:use-module (gnu packages compression)
|
||
#:use-module (gnu packages flex)
|
||
#:use-module (gnu packages fontutils)
|
||
#:use-module (gnu packages gd)
|
||
#:use-module (gnu packages glib)
|
||
#:use-module (gnu packages gnome)
|
||
#:use-module (gnu packages gtk)
|
||
#:use-module (gnu packages guile)
|
||
#:use-module (gnu packages image)
|
||
#:use-module (gnu packages perl)
|
||
#:use-module (gnu packages pkg-config)
|
||
#:use-module (gnu packages python)
|
||
#:use-module (gnu packages python-check)
|
||
#:use-module (gnu packages python-xyz)
|
||
#:use-module (gnu packages sphinx)
|
||
#:use-module (gnu packages swig)
|
||
#:use-module (gnu packages tcl)
|
||
#:use-module (gnu packages tex)
|
||
#:use-module (gnu packages xml)
|
||
#:use-module (gnu packages xorg)
|
||
#:use-module ((guix licenses) #:prefix license:))
|
||
|
||
(define-public graphviz
|
||
(package
|
||
(name "graphviz")
|
||
(replacement graphviz/fixed)
|
||
(version "2.42.3")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"https://www2.graphviz.org/Packages/stable/portable_source/"
|
||
"graphviz-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1pbswjbx3fjdlsxcm7cmlsl5bvaa3d6gcnr0cr8x3c8pag13zbwg"))))
|
||
(build-system gnu-build-system)
|
||
(arguments
|
||
;; FIXME: rtest/rtest.sh is a ksh script (!). Add ksh as an input.
|
||
'(#:tests? #f
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'install 'move-docs
|
||
(lambda* (#:key outputs #:allow-other-keys)
|
||
(let ((out (assoc-ref outputs "out"))
|
||
(doc (assoc-ref outputs "doc")))
|
||
(mkdir-p (string-append doc "/share/graphviz"))
|
||
(rename-file (string-append out "/share/graphviz/doc")
|
||
(string-append doc "/share/graphviz/doc"))
|
||
#t)))
|
||
(add-after 'move-docs 'move-guile-bindings
|
||
(lambda* (#:key outputs #:allow-other-keys)
|
||
(let* ((out (assoc-ref outputs "out"))
|
||
(lib (string-append out "/lib"))
|
||
(extdir (string-append lib
|
||
"/guile/2.0/extensions")))
|
||
(mkdir-p extdir)
|
||
(rename-file (string-append
|
||
lib "/graphviz/guile/libgv_guile.so")
|
||
(string-append extdir
|
||
"/libgv_guile.so"))
|
||
#t))))))
|
||
(inputs
|
||
`(("libXrender" ,libxrender)
|
||
("libX11" ,libx11)
|
||
("gts" ,gts)
|
||
("gd" ,gd) ; FIXME: Our GD is too old
|
||
("guile" ,guile-2.0) ;Guile bindings
|
||
("pango" ,pango)
|
||
("fontconfig" ,fontconfig)
|
||
("freetype" ,freetype)
|
||
("libltdl" ,libltdl)
|
||
("libXaw" ,libxaw)
|
||
("expat" ,expat)
|
||
("libjpeg" ,libjpeg-turbo)
|
||
("libpng" ,libpng)))
|
||
(native-inputs
|
||
`(("bison" ,bison)
|
||
("swig" ,swig)
|
||
("pkg-config" ,pkg-config)))
|
||
(outputs '("out" "doc")) ; 5 MiB of html + pdfs
|
||
(home-page "https://www.graphviz.org/")
|
||
(synopsis "Graph visualization software")
|
||
(description
|
||
"Graphviz is a graph visualization tool suite. Graph visualization is a
|
||
way of representing structural information as diagrams of abstract graphs and
|
||
networks. It has important applications in networking, bioinformatics,
|
||
software engineering, database and web design, machine learning, and in visual
|
||
interfaces for other technical domains.")
|
||
(license license:epl1.0)))
|
||
|
||
(define-public graphviz/fixed
|
||
(hidden-package
|
||
(package
|
||
(inherit graphviz)
|
||
(source (origin
|
||
(inherit (package-source graphviz))
|
||
(patches (append (search-patches "graphviz-CVE-2020-18032.patch")
|
||
(origin-patches (package-source graphviz)))))))))
|
||
|
||
;; Older Graphviz needed for pygraphviz. See
|
||
;; https://github.com/pygraphviz/pygraphviz/issues/175
|
||
(define-public graphviz-2.38
|
||
;; This commit corresponds to the changelog change for version 2.38.0.
|
||
;; There are no tags.
|
||
(let ((commit "f54ac2c9313ae80ccf76ef4ac6aa9be820a23126")
|
||
(revision "1"))
|
||
(package (inherit graphviz)
|
||
(name "graphviz")
|
||
(version (git-version "2.38.0" revision commit))
|
||
(source (origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://gitlab.com/graphviz/graphviz.git")
|
||
(commit commit)))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32
|
||
"1vjg308gflmi1khgjmcj431cnkrlv12bg4cqah39mwhny92jy92x"))))
|
||
(arguments
|
||
(substitute-keyword-arguments (package-arguments graphviz)
|
||
((#:phases phases)
|
||
`(modify-phases ,phases
|
||
(add-after 'unpack 'prepare-bootstrap
|
||
(lambda _
|
||
(substitute* "autogen.sh"
|
||
(("/bin/sh") (which "sh"))
|
||
(("\\$GRAPHVIZ_VERSION_DATE") "0"))
|
||
(setenv "CONFIG_SHELL" (which "sh"))
|
||
(setenv "SHELL" (which "sh"))
|
||
|
||
(map make-file-writable (find-files "." ".*"))
|
||
#t))
|
||
(replace 'bootstrap
|
||
(lambda _ (invoke (which "sh") "autogen.sh" "NOCONFIG") #t))))))
|
||
(native-inputs
|
||
`(("autoconf" ,autoconf)
|
||
("automake" ,automake)
|
||
("libtool" ,libtool)
|
||
("flex" ,flex)
|
||
("perl" ,perl)
|
||
("tcl" ,tcl)
|
||
,@(package-native-inputs graphviz))))))
|
||
|
||
(define-public python-graphviz
|
||
(package
|
||
(name "python-graphviz")
|
||
(version "0.13.2")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "graphviz" version ".zip"))
|
||
(sha256
|
||
(base32
|
||
"009alrilzx0v7kl41khbq7k6k8b8pxyvbsi1b1ai933f6kpbxb30"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
'(#:phases (modify-phases %standard-phases
|
||
(replace 'check
|
||
(lambda* (#:key tests #:allow-other-keys)
|
||
(if tests
|
||
(invoke "pytest" "-vv")
|
||
(format #t "test suite not run~%"))
|
||
#t)))))
|
||
(native-inputs
|
||
`(("unzip" ,unzip)
|
||
|
||
;; For tests.
|
||
("graphviz" ,graphviz)
|
||
("python-mock" ,python-mock)
|
||
("python-pytest" ,python-pytest)
|
||
("python-pytest-cov" ,python-pytest-cov)
|
||
("python-pytest-mock" ,python-pytest-mock)))
|
||
(home-page "https://github.com/xflr6/graphviz")
|
||
(synopsis "Simple Python interface for Graphviz")
|
||
(description
|
||
"This package provides a simple Python interface for the Graphviz graph
|
||
visualization tool suite.")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-graphviz
|
||
(package-with-python2 python-graphviz))
|
||
|
||
(define-public python-pygraphviz
|
||
(package
|
||
(name "python-pygraphviz")
|
||
(version "1.5")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/pygraphviz/pygraphviz")
|
||
(commit (string-append "pygraphviz-" version))))
|
||
(file-name (string-append "pygraphviz-" version "-checkout"))
|
||
(sha256
|
||
(base32
|
||
"1yldym38m8ckgflln83i88143pd9fjj1vfp23sq39fs6np5g0nzp"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:configure-flags
|
||
(let ((graphviz (assoc-ref %build-inputs "graphviz")))
|
||
(list (string-append "--include-path=" graphviz "/include")
|
||
(string-append "--library-path=" graphviz "/lib")))))
|
||
(inputs
|
||
`(("graphviz" ,graphviz-2.38)))
|
||
(native-inputs
|
||
`(("python-nose" ,python-nose)
|
||
("python-mock" ,python-mock)
|
||
("python-doctest-ignore-unicode" ,python-doctest-ignore-unicode)))
|
||
(home-page "https://pygraphviz.github.io")
|
||
(synopsis "Python interface to Graphviz")
|
||
(description "PyGraphviz is a Python interface to the Graphviz graph
|
||
layout and visualization package. With PyGraphviz you can create, edit, read,
|
||
write, and draw graphs using Python to access the Graphviz graph data
|
||
structure and layout algorithms.")
|
||
(license license:bsd-3)))
|
||
|
||
(define-public python2-pygraphviz
|
||
(package-with-python2 python-pygraphviz))
|
||
|
||
(define-public python-uqbar
|
||
(package
|
||
(name "python-uqbar")
|
||
(version "0.5.1")
|
||
(source
|
||
(origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://github.com/josiah-wolf-oberholtzer/uqbar")
|
||
(commit (string-append "v" version))))
|
||
(file-name (git-file-name name version))
|
||
(sha256
|
||
(base32
|
||
"0413nyhd8z8v3lvsgaghhafnyxg90fi1q80j1kbl21gpmpnc9a7n"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'unpack 'patch
|
||
(lambda _
|
||
(substitute* "setup.py"
|
||
;; Latest versions of sphink-rtd-theme require npm to build.
|
||
(("sphinx-rtd-theme >= 0.4.0") "sphinx-rtd-theme >= 0.2.4")
|
||
(("black == 19.10b0") "black >= 19.10b0"))
|
||
#t))
|
||
(replace 'check
|
||
(lambda* (#:key tests? #:allow-other-keys)
|
||
(when tests?
|
||
(invoke "python" "-m" "pytest" "tests"))
|
||
#t)))))
|
||
(native-inputs
|
||
`(("graphviz" ,graphviz)
|
||
("python-flake8" ,python-flake8)
|
||
("python-isort" ,python-isort)
|
||
("python-mypy" ,python-mypy)
|
||
("python-pytest" ,python-pytest)
|
||
("python-pytest-cov" ,python-pytest-cov)))
|
||
(propagated-inputs
|
||
`(("python-black" ,python-black)
|
||
("python-sphinx" ,python-sphinx)
|
||
("python-sphinx-rtd-theme" ,python-sphinx-rtd-theme)
|
||
("python-unidecode" ,python-unidecode)))
|
||
(home-page "https://github.com/josiah-wolf-oberholtzer/uqbar")
|
||
(synopsis "Tools for building documentation with Sphinx, Graphviz and LaTeX")
|
||
(description
|
||
"This package contains tools for building documentation with Sphinx,
|
||
Graphviz and LaTeX.")
|
||
(license license:expat)))
|
||
|
||
(define-public gts
|
||
(package
|
||
(name "gts")
|
||
(version "0.7.6")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (string-append "mirror://sourceforge/gts/gts/" version
|
||
"/gts-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"07mqx09jxh8cv9753y2d2jsv7wp8vjmrd7zcfpbrddz3wc9kx705"))))
|
||
(build-system gnu-build-system)
|
||
(arguments
|
||
'(#:phases
|
||
(modify-phases %standard-phases
|
||
(add-before 'check 'pre-check
|
||
(lambda _
|
||
(chmod "test/boolean/test.sh" #o777)
|
||
#t)))
|
||
|
||
;; Some data files used by the test suite are missing.
|
||
;; See <http://sourceforge.net/p/gts/bugs/41/>.
|
||
#:tests? #f))
|
||
(native-inputs
|
||
`(("pkg-config" ,pkg-config)))
|
||
(propagated-inputs
|
||
;; The gts.pc file has glib-2.0 as required.
|
||
`(("glib" ,glib)))
|
||
(home-page "http://gts.sourceforge.net/")
|
||
|
||
;; Note: Despite the name, this is not official GNU software.
|
||
(synopsis "Triangulated Surface Library")
|
||
(description
|
||
"Library intended to provide a set of useful functions to deal with
|
||
3D surfaces meshed with interconnected triangles.")
|
||
(license license:lgpl2.0+)))
|
||
|
||
(define-public xdot
|
||
(package
|
||
(name "xdot")
|
||
(version "1.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "xdot" version))
|
||
(sha256
|
||
(base32
|
||
"0cr4rh7dz4dfzyxrk5pzhm0d15gkrgkfp3i5lw178xy81pc56p71"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:phases
|
||
(modify-phases %standard-phases
|
||
;; We wrap xdot, so that we don't propagate gtk+ and graphviz
|
||
(add-after 'install 'wrap
|
||
(lambda* (#:key inputs outputs #:allow-other-keys)
|
||
(wrap-program (string-append (assoc-ref outputs "out") "/bin/xdot")
|
||
`("GI_TYPELIB_PATH" ":" prefix
|
||
(,(string-append
|
||
(assoc-ref inputs "gtk+") "/lib/girepository-1.0"
|
||
":" (assoc-ref inputs "pango") "/lib/girepository-1.0"
|
||
":" (assoc-ref inputs "gdk-pixbuf") "/lib/girepository-1.0"
|
||
":" (assoc-ref inputs "atk") "/lib/girepository-1.0")))
|
||
`("PATH" ":" prefix
|
||
(,(string-append (assoc-ref inputs "graphviz") "/bin"))))
|
||
#t)))))
|
||
(inputs
|
||
`(("atk" ,atk)
|
||
("gdk-pixbuf" ,gdk-pixbuf+svg)
|
||
("graphviz" ,graphviz)
|
||
("gtk+" ,gtk+)
|
||
("python-pycairo" ,python-pycairo)
|
||
("python-pygobject" ,python-pygobject)))
|
||
(home-page "https://pypi.org/project/xdot/")
|
||
(synopsis "Interactive viewer for graphviz dot files")
|
||
(description "Xdot is an interactive viewer for graphs written in
|
||
@code{graphviz}’s dot language. Internally, it uses the xdot output format as
|
||
an intermediate format, and @code{gtk} and @code{cairo} for rendering. Xdot
|
||
can be used either as a standalone application, or as a Python library.")
|
||
(license license:lgpl3+)))
|
||
|
||
(define-public python-pydot
|
||
(package
|
||
(name "python-pydot")
|
||
(version "1.4.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "pydot" version))
|
||
(sha256
|
||
(base32
|
||
"00az4cbf8bv447lkk9xi6pjm7gcc7ia33y4pm71fwfwis56rv76l"))
|
||
(patches (search-patches "python-pydot-regression-test.patch"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
'(#:phases
|
||
(modify-phases %standard-phases
|
||
(replace 'check
|
||
;; Taken from .travis.yaml
|
||
(lambda* (#:key tests? inputs outputs #:allow-other-keys)
|
||
(when tests?
|
||
(add-installed-pythonpath inputs outputs)
|
||
(with-directory-excursion "test"
|
||
(invoke "python" "pydot_unittest.py")))
|
||
#t)))))
|
||
(native-inputs
|
||
;; For tests.
|
||
`(("graphviz" ,graphviz)
|
||
("python-chardet" ,python-chardet)))
|
||
(propagated-inputs
|
||
`(("python-pyparsing" ,python-pyparsing)))
|
||
(home-page "https://github.com/pydot/pydot")
|
||
(synopsis "Python interface to Graphviz's DOT language")
|
||
(description
|
||
"Pydot provides an interface to create, handle, modify and process
|
||
graphs in Graphviz's DOT language, written in pure Python.")
|
||
(license license:expat)))
|
||
|
||
(define-public python2-pydot
|
||
(package-with-python2 python-pydot))
|
||
|
||
(define-public dot2tex
|
||
(package
|
||
(name "dot2tex")
|
||
(version "2.11.3")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "dot2tex" version))
|
||
(sha256
|
||
(base32
|
||
"1kp77wiv7b5qib82i3y3sn9r49rym43aaqm5aw1bwnzfbbq2m6i9"))))
|
||
(build-system python-build-system)
|
||
(arguments
|
||
`(#:python ,python-2))
|
||
(inputs
|
||
`(("texlive-latex-preview" ,texlive-latex-preview)
|
||
("graphviz" ,graphviz)))
|
||
(propagated-inputs
|
||
`(("python-pyparsing" ,python2-pyparsing)))
|
||
(home-page "https://github.com/kjellmf/dot2tex")
|
||
(synopsis "Graphviz to LaTeX converter")
|
||
(description
|
||
"The purpose of @code{dot2tex} is to give graphs generated by Graphviz a
|
||
more LaTeX friendly look and feel. This is accomplished by converting
|
||
@code{xdot} output from Graphviz to a series of PSTricks or PGF/TikZ commands.
|
||
This approach allows:
|
||
|
||
@itemize @bullet
|
||
@item Typesetting labels with LaTeX, allowing mathematical notation
|
||
@item Using native PSTricks and PGF/TikZ commands for drawing arrows
|
||
@item Using backend specific styles to customize the output
|
||
@end itemize")
|
||
(license license:expat)))
|