* gnu/packages/patches/openbabel-fix-crash-on-nwchem-output.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/chemistry.scm (openbabel)[source]: Use it.
		
			
				
	
	
		
			34 lines
		
	
	
	
		
			1 KiB
		
	
	
	
		
			Diff
		
	
	
	
	
	
			
		
		
	
	
			34 lines
		
	
	
	
		
			1 KiB
		
	
	
	
		
			Diff
		
	
	
	
	
	
| From 52cea818bf68f8a2d3c48d55d00c2f8b7da25e4c Mon Sep 17 00:00:00 2001
 | |
| From: Daniel Hogan <daniel.hogan@usask.ca>
 | |
| Date: Tue, 28 Mar 2017 22:21:18 -0600
 | |
| Subject: [PATCH] Remove delete statement.
 | |
| 
 | |
| When from_scratch is true, coordinates is not allocated. A separate if
 | |
| statement was added to handle the case when from_scratch is true that
 | |
| does not try to free coordinates.
 | |
| ---
 | |
|  src/formats/nwchemformat.cpp | 9 ++++++---
 | |
|  1 file changed, 6 insertions(+), 3 deletions(-)
 | |
| 
 | |
| diff --git a/src/formats/nwchemformat.cpp b/src/formats/nwchemformat.cpp
 | |
| index 6f625ad5b..79298555f 100644
 | |
| --- a/src/formats/nwchemformat.cpp
 | |
| +++ b/src/formats/nwchemformat.cpp
 | |
| @@ -232,11 +232,14 @@ static const char* OPTIMIZATION_END_PATTERN = "  Optimization converged";
 | |
|            break;
 | |
|          tokenize(vs,buffer);
 | |
|      }
 | |
| -    if ((from_scratch)||(i != natoms))
 | |
| -      {
 | |
| +    if (from_scratch) 
 | |
| +    {
 | |
| +        return;
 | |
| +    }
 | |
| +    if (i != natoms) {
 | |
|          delete[] coordinates;
 | |
|          return;
 | |
| -      }
 | |
| +    }
 | |
|      molecule->AddConformer(coordinates);
 | |
|    }
 | |
|  
 |