3832704aff
* gnu/packages/bioinformatics.scm (minimap2)[arguments]: Adjust configure-flags to be better per-architecture. [source]: Add patch. * gnu/packages/patches/minimap2-aarch64-support.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
52 lines
2.2 KiB
Diff
52 lines
2.2 KiB
Diff
This patch should be removed with the next release. There is WIP upstream
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support for proper support of more architectures, including aarch64 and powerpc64le.
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diff --git a/Makefile b/Makefile
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index ed341f6..94dbd85 100644
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--- a/Makefile
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+++ b/Makefile
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@@ -6,20 +6,18 @@ PROG= minimap2
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PROG_EXTRA= sdust minimap2-lite
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LIBS= -lm -lz -lpthread
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-ifeq ($(arm_neon),) # if arm_neon is not defined
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-ifeq ($(sse2only),) # if sse2only is not defined
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- OBJS+=ksw2_extz2_sse41.o ksw2_extd2_sse41.o ksw2_exts2_sse41.o ksw2_extz2_sse2.o ksw2_extd2_sse2.o ksw2_exts2_sse2.o ksw2_dispatch.o
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-else # if sse2only is defined
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- OBJS+=ksw2_extz2_sse.o ksw2_extd2_sse.o ksw2_exts2_sse.o
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-endif
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-else # if arm_neon is defined
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+ifneq ($(arm_neon),) # if arm_neon is defined
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OBJS+=ksw2_extz2_neon.o ksw2_extd2_neon.o ksw2_exts2_neon.o
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- INCLUDES+=-Isse2neon
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-ifeq ($(aarch64),) #if aarch64 is not defined
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CFLAGS+=-D_FILE_OFFSET_BITS=64 -mfpu=neon -fsigned-char
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-else #if aarch64 is defined
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+ INCLUDES+=-Isse2neon
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+else ifneq ($(aarch64),) #if aarch64 is defined
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+ OBJS+=ksw2_extz2_neon.o ksw2_extd2_neon.o ksw2_exts2_neon.o
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CFLAGS+=-D_FILE_OFFSET_BITS=64 -fsigned-char
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-endif
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+ INCLUDES+=-Isse2neon
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+else ifneq ($(sse2only),) # if sse2only is defined
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+ OBJS+=ksw2_extz2_sse.o ksw2_extd2_sse.o ksw2_exts2_sse.o
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+else # none of the above
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+ OBJS+=ksw2_extz2_sse41.o ksw2_extd2_sse41.o ksw2_exts2_sse41.o ksw2_extz2_sse2.o ksw2_extd2_sse2.o ksw2_exts2_sse2.o ksw2_dispatch.o
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endif
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.PHONY:all extra clean depend
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@@ -46,9 +44,12 @@ sdust:sdust.c kalloc.o kalloc.h kdq.h kvec.h kseq.h ketopt.h sdust.h
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# SSE-specific targets on x86/x86_64
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-ifeq ($(arm_neon),) # if arm_neon is defined, compile this target with the default setting (i.e. no -msse2)
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+ifneq ($(arm_neon),) # if arm_neon is defined, compile this target with the default setting (i.e. no -msse2)
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+ksw2_ll_sse.o:ksw2_ll_sse.c ksw2.h kalloc.h
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+else ifneq ($(aarch64),)
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ksw2_ll_sse.o:ksw2_ll_sse.c ksw2.h kalloc.h
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- $(CC) -c $(CFLAGS) -msse2 $(CPPFLAGS) $(INCLUDES) $< -o $@
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+else
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+ $(CC) -c $(CFLAGS) -msse2 $(CPPFLAGS) $(INCLUDES) $< -o $@
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endif
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ksw2_extz2_sse41.o:ksw2_extz2_sse.c ksw2.h kalloc.h
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