cc6ed47737
* gnu/packages/bioinformatics.scm (plink): New variable. * gnu/packages/patches/plink-1.07-unclobber-i.patch: New file.
69 lines
2 KiB
Diff
69 lines
2 KiB
Diff
GCC rightfully complains about redefined variables, as iterator declarations
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appear inside loops with a loop variable of the same name.
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This patch has been sent upstream.
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--- a/sets.cpp 2015-06-25 11:22:08.252821681 +0200
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+++ b/sets.cpp 2015-06-25 11:22:23.239187985 +0200
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@@ -768,11 +768,11 @@
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//////////////////////////////////////////////
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// Reset original missing status
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- vector<Individual*>::iterator i = PP->sample.begin();
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- while ( i != PP->sample.end() )
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+ vector<Individual*>::iterator it = PP->sample.begin();
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+ while ( it != PP->sample.end() )
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{
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- (*i)->missing = (*i)->flag;
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- ++i;
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+ (*it)->missing = (*it)->flag;
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+ ++it;
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}
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////////////////////////////////////////////////
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--- a/elf.cpp 2009-10-10 18:00:21.000000000 +0200
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+++ b/elf.cpp 2015-06-25 11:34:06.136835756 +0200
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@@ -1175,10 +1175,10 @@
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<< setw(8) << gcnt << " "
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<< setw(8) << (double)cnt / (double)gcnt << "\n";
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- map<int,int>::iterator i = chr_cnt.begin();
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- while ( i != chr_cnt.end() )
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+ map<int,int>::iterator it = chr_cnt.begin();
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+ while ( it != chr_cnt.end() )
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{
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- int c = i->first;
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+ int c = it->first;
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int x = chr_cnt.find( c )->second;
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int y = chr_gcnt.find( c )->second;
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@@ -1189,7 +1189,7 @@
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<< setw(8) << y << " "
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<< setw(8) << (double)x / (double)y << "\n";
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- ++i;
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+ ++it;
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}
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}
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--- plink-1.07-src/idhelp.cpp 2009-10-10 18:00:22.000000000 +0200
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+++ plink-1.07-src/idhelp.cpp.patched 2015-06-25 11:37:39.387204086 +0200
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@@ -772,12 +772,12 @@
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for (int j = 0 ; j < jointField.size(); j++ )
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{
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set<IDField*> & jf = jointField[j];
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- set<IDField*>::iterator j = jf.begin();
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+ set<IDField*>::iterator jit = jf.begin();
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PP->printLOG(" { ");
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- while ( j != jf.end() )
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+ while ( jit != jf.end() )
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{
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- PP->printLOG( (*j)->name + " " );
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- ++j;
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+ PP->printLOG( (*jit)->name + " " );
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+ ++jit;
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}
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PP->printLOG(" }");
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}
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