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guix/gnu/packages
Ricardo Wurmus dfd4287cba
gnu: r-minfi: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.32.0.
2019-12-15 15:39:13 +01:00
..
aux-files gnu: emacs: Use load-path instead of EMACSLOADPATH. 2019-12-04 11:06:49 +01:00
patches gnu: hdf5@1.10: Update to 1.10.5. 2019-12-13 18:04:04 +01:00
abduco.scm
abiword.scm
accessibility.scm
acct.scm
acl.scm
ada.scm
admin.scm gnu: netcat-openbsd: Update to 1.206-1. 2019-12-11 13:38:15 -06:00
adns.scm
agda.scm
aidc.scm
algebra.scm gnu: giac: Update to 1.5.0-75. 2019-12-01 21:24:20 +01:00
android.scm gnu: android-libselinux: Avoid top-level references to 'libsellinux'. 2019-12-02 11:32:17 +01:00
animation.scm
anthy.scm
antivirus.scm
apl.scm
apr.scm
arcan.scm
aspell.scm
assembly.scm gnu: nasm: Don't use NAME in source URI. 2019-12-01 00:49:13 +01:00
astronomy.scm gnu: stellarium: Update to 0.19.2. 2019-12-01 03:14:01 +01:00
attr.scm
audio.scm gnu: bluez-alsa: Update to 2.0.0. 2019-12-13 22:53:19 +01:00
augeas.scm
authentication.scm
autogen.scm
autotools.scm
avahi.scm
avr.scm
axoloti.scm
backup.scm gnu: restic: Update to 0.9.6. 2019-11-24 13:32:58 +01:00
base.scm
bash.scm
batik.scm
bdw-gc.scm
benchmark.scm gnu: fio: Download over HTTPS. 2019-12-12 03:02:31 +01:00
bioconductor.scm gnu: r-minfi: Update to 1.32.0. 2019-12-15 15:39:13 +01:00
bioinformatics.scm gnu: r-genefilter: Update to 1.68.0. 2019-12-15 15:39:04 +01:00
bison.scm
bittorrent.scm gnu: qbittorrent: Update to 4.2.0. 2019-12-07 10:17:01 -06:00
boost.scm gnu: Add boost-static. 2019-11-25 14:08:31 +02:00
bootloaders.scm gnu: bootloaders: Avoid #:select on (gnu packages …) module. 2019-12-15 00:34:05 +01:00
bootstrap.scm
build-tools.scm gnu: bear: Update to 2.4.2. 2019-11-22 22:46:54 +01:00
busybox.scm gnu: toybox: Update to 0.8.2. 2019-12-01 00:49:13 +01:00
c.scm gnu: tcc: Add search paths and drop the wrapper. 2019-12-03 22:18:08 +01:00
calcurse.scm gnu: calcurse: Update to 4.5.1. 2019-12-01 00:49:12 +01:00
calendar.scm gnu: remind: Update to 3.1.17. 2019-12-12 03:02:30 +01:00
ccache.scm
cdrom.scm gnu: libcdio-paranoia: Update to 10.2+2.0.1. 2019-12-12 03:02:30 +01:00
cedille.scm
certs.scm
check.scm gnu: python2-pylint: Update to 1.9.5. 2019-12-07 14:04:10 -05:00
chemistry.scm gnu: nmoldyn: New source code location. 2019-11-21 11:48:30 +01:00
chez.scm
chromium.scm gnu: ungoogled-chromium: Update to 78.0.3904.108-0.8f06513 [security fixes]. 2019-11-21 22:41:44 +01:00
ci.scm
cinnamon.scm gnu: cinnamon-desktop: Don't use unstable tarball. 2019-11-25 14:08:30 +02:00
clojure.scm
cluster.scm gnu: libraft: Update to 0.9.11. 2019-12-11 04:47:04 +02:00
cmake.scm
cobol.scm
code.scm gnu: astyle: Install header file, too. 2019-11-21 18:23:33 +01:00
commencement.scm gnu: Add gfortran-toolchain 2019-12-15 00:34:05 +01:00
compression.scm gnu: Add ncompress. 2019-12-06 06:52:36 +01:00
compton.scm
conky.scm
connman.scm
cook.scm
coq.scm gnu: coq: Split coqide. 2019-12-12 20:10:18 +01:00
cpio.scm
cpp.scm gnu: Remove duplicate nlohmann-json-cpp package. 2019-12-04 20:10:34 +01:00
cppi.scm
cran.scm gnu: Add r-knn-covertree. 2019-12-15 15:38:51 +01:00
crates-io.scm
cross-base.scm
crypto.scm gnu: enchive: Update to 3.5. 2019-12-11 04:51:57 +02:00
cryptsetup.scm
cups.scm
curl.scm
cvassistant.scm
cyrus-sasl.scm
databases.scm Merge branch 'staging' 2019-12-04 20:12:41 +01:00
datamash.scm
datastructures.scm gnu: sdsl-lite: Don't use bundled libraries. 2019-11-25 14:08:32 +02:00
dav.scm
dbm.scm
dc.scm gnu: ncdc: Update to 1.22.1. 2019-12-01 00:49:15 +01:00
debian.scm
debug.scm gnu: stress-make: Avoid top-level reference to 'gnu-make'. 2019-12-02 11:16:31 +01:00
dejagnu.scm
dico.scm
dictionaries.scm gnu: grammalecte: Update to 1.6.0. 2019-12-01 21:23:46 +01:00
diffoscope.scm gnu: diffoscope: Update to 131. 2019-11-23 18:55:46 -08:00
digest.scm
direct-connect.scm
disk.scm gnu: gparted: Satisfy 'guix lint'. 2019-11-28 12:30:41 +02:00
display-managers.scm gnu: sddm: Use qt-build-system. 2019-12-01 20:24:47 +01:00
distributed.scm
django.scm gnu: python-django-jinja: Don't use unstable tarball. 2019-11-26 20:27:24 +02:00
djvu.scm
dlang.scm
dns.scm gnu: knot: Update to 2.9.1 [fixes CVE-2019-19331]. 2019-12-04 16:09:20 -05:00
docbook.scm
docker.scm gnu: docker-cli: Install shell completion. 2019-12-08 10:39:09 +03:00
documentation.scm
dunst.scm
dvtm.scm
easyrpg.scm
ebook.scm
ed.scm
education.scm Merge branch 'staging' 2019-12-04 20:12:41 +01:00
efi.scm gnu: gnu-efi: Update to 3.0.11. 2019-12-01 00:49:16 +01:00
electronics.scm
elf.scm
elixir.scm
elm.scm
emacs-xyz.scm gnu: emacs-cider: Update home-page. 2019-12-14 18:46:06 -06:00
emacs.scm gnu: emacs: Delete the subdirs.el file under the site-lisp directory. 2019-12-09 13:52:22 +09:00
embedded.scm gnu: Add west. 2019-12-05 16:54:59 +01:00
emulators.scm gnu: scummvm: Update to 2.1.0. 2019-12-01 22:04:52 +01:00
enchant.scm
engineering.scm gnu: Use the test-only Xorg variant for tests. 2019-11-28 00:33:47 +01:00
enlightenment.scm gnu: terminology: Update to 1.6.0. 2019-12-10 13:10:31 +02:00
entr.scm
erlang.scm
fabric-management.scm
fcitx.scm
figlet.scm
file-systems.scm gnu: glusterfs: Update to 7.0 2019-12-08 00:47:26 +01:00
file.scm
finance.scm gnu: bitcoin-abc: Update to 0.20.7. 2019-12-09 18:32:04 +01:00
firmware.scm gnu: seabios: Update to 1.13.0. 2019-12-11 22:28:22 +01:00
flashing-tools.scm
flex.scm
fltk.scm
fonts.scm
fontutils.scm
forth.scm
fpga.scm
freedesktop.scm gnu: elogind: Update to 241.4. 2019-12-11 01:13:23 +01:00
freeipmi.scm
fribidi.scm
ftp.scm
fvwm.scm
game-development.scm
games.scm gnu: Add kjumpingcube. 2019-12-10 17:28:47 +01:00
gawk.scm
gcal.scm
gcc.scm
gd.scm
gdb.scm
genealogy.scm
genimage.scm
geo.scm gnu: josm: Update to 15553. 2019-12-14 17:43:17 +01:00
gettext.scm
ghostscript.scm
gimp.scm
gkrellm.scm
gl.scm
glib.scm gnu: Add glib-with-documentation. 2019-11-27 13:34:22 +01:00
gnome-xyz.scm gnu: gnome-shell-extension-dash-to-dock: Update to 66. 2019-12-11 18:05:18 +02:00
gnome.scm gnu: libsoup: Update to 2.68.3. 2019-12-11 01:13:23 +01:00
gnu-doc.scm
gnu-pw-mgr.scm
gnucash.scm gnu: gnucash: Activate database support. 2019-11-26 00:16:54 +01:00
gnunet.scm gnu: gnunet-gtk: Sort inputs alphabetically. 2019-11-25 14:08:29 +02:00
gnupg.scm gnu: gnupg: Update to 2.2.19. 2019-12-10 13:42:04 +02:00
gnustep.scm
gnuzilla.scm Merge branch 'staging' 2019-12-04 20:12:41 +01:00
gobby.scm
golang.scm
gperf.scm
gpodder.scm
gprolog.scm
gps.scm
graph.scm gnu: r-rgraphviz: Update to 2.30.0. 2019-12-15 15:38:52 +01:00
graphics.scm gnu: Blender: Update to 2.81. 2019-11-27 21:58:45 -05:00
graphviz.scm
groff.scm
groovy.scm
gsasl.scm
gstreamer.scm
gtk.scm gnu: girara: Fetch sources from git. 2019-12-04 23:10:21 +01:00
guile-wm.scm
guile-xyz.scm gnu: guile-file-names: Update to 0.3. 2019-12-06 22:22:07 +01:00
guile.scm gnu: guile-next: Update to 2.9.7. 2019-12-13 18:04:04 +01:00
gv.scm
gxmessage.scm
ham-radio.scm
hardware.scm
haskell-apps.scm gnu: kmonad: Update to 0.3.0. 2019-11-21 10:38:42 -06:00
haskell-check.scm gnu: Add ghc-testing-feat. 2019-11-20 20:48:52 -05:00
haskell-crypto.scm
haskell-web.scm gnu: Add ghc-happstack-server. 2019-12-06 15:48:20 -06:00
haskell-xyz.scm gnu: ghc-foundation: Disable broken test. 2019-11-20 20:48:55 -05:00
haskell.scm
hexedit.scm
hugs.scm
hurd.scm
hyperledger.scm
i2p.scm gnu: i2pd: Update to 2.29.0. 2019-12-09 18:32:05 +01:00
ibus.scm
icu4c.scm
idris.scm
idutils.scm
image-processing.scm gnu: dcmtk: Update to 3.6.5. 2019-12-01 00:49:13 +01:00
image-viewers.scm gnu: feh: Update to 3.3. 2019-12-04 21:26:50 +01:00
image.scm gnu: imlib2: Update to 1.6.1. 2019-12-13 22:57:31 +02:00
imagemagick.scm gnu: graphicsmagick: Update to 1.3.33. 2019-12-12 03:02:30 +01:00
inklingreader.scm
inkscape.scm
installers.scm
ipfs.scm gnu: gx: Update to 0.14.2. 2019-12-12 03:02:30 +01:00
irc.scm gnu: limnoria: Update to 2019.11.22. 2019-11-29 23:53:54 +01:00
iso-codes.scm
java-compression.scm
java-maths.scm
java.scm gnu: java-svg-salamander: Return #t from snippet. 2019-12-15 12:31:35 +01:00
javascript.scm gnu: Really move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm. 2019-12-05 16:23:06 +01:00
jemalloc.scm
jose.scm
jrnl.scm
julia.scm
jupyter.scm gnu: Remove duplicate nlohmann-json-cpp package. 2019-12-04 20:10:34 +01:00
kawa.scm
kde-frameworks.scm gnu: baloo: Blacklist some failing tests. 2019-12-07 20:44:33 +01:00
kde-plasma.scm Merge branch 'master' into staging 2019-11-28 00:38:25 +01:00
kde.scm gnu: Deprecate kdevplatform package. 2019-12-11 11:52:51 +01:00
kerberos.scm
key-mon.scm
kodi.scm
language.scm
ld-wrapper.in
lego.scm
less.scm gnu: less: Update to 551. 2019-12-03 01:52:45 +01:00
lesstif.scm
libbsd.scm
libcanberra.scm
libdaemon.scm
libedit.scm
libevent.scm
libffcall.scm
libffi.scm
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm gnu: libwpd: Update to 0.10.3. 2019-12-12 03:02:31 +01:00
libsigsegv.scm
libunistring.scm
libunwind.scm
libusb.scm gnu: libplist: Update to 2.1.0. 2019-11-22 00:22:10 +01:00
license.scm
lighting.scm
linux.scm gnu: linux-libre: Update to 5.3.16. 2019-12-13 23:09:39 -05:00
lirc.scm
lisp-xyz.scm gnu: Really move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm. 2019-12-05 16:23:06 +01:00
lisp.scm gnu: sbcl: Fix missing return value of phase. 2019-12-09 12:20:48 +01:00
llvm.scm
logging.scm
logo.scm
lolcode.scm
lout.scm
lsof.scm gnu: lsof: Don't capture details about the build machine's kernel. 2019-11-30 23:50:40 +01:00
lua.scm
lxde.scm
lxqt.scm gnu: qps: Update to 2.0.0. 2019-12-10 12:52:17 -06:00
m4.scm
machine-learning.scm gnu: Really move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm. 2019-12-05 16:23:06 +01:00
magic-wormhole.scm
mail.scm gnu: bogofilter: Use HTTPS home page. 2019-12-12 03:02:30 +01:00
make-bootstrap.scm
man.scm gnu: man-pages: Update to 5.04. 2019-11-22 00:22:10 +01:00
markup.scm
marst.scm
mastodon.scm gnu: toot: Make propagated-inputs regular inputs. 2019-12-03 11:00:14 +02:00
mate.scm
maths.scm gnu: hdf5@1.10: Update to 1.10.5. 2019-12-13 18:04:04 +01:00
maven.scm
mc.scm
mcrypt.scm
medical.scm
mes.scm gnu: Add mes-rb5. 2019-12-07 19:30:36 +01:00
messaging.scm gnu: gajim: Fix search for translations. 2019-12-10 17:30:46 +01:00
microcom.scm gnu: microcom: Use HTTPS home page. 2019-12-03 01:52:45 +01:00
mingw.scm
moe.scm
monitoring.scm
mono.scm
moreutils.scm
motti.scm
mp3.scm
mpd.scm gnu: ncmpc: Update to 0.36. 2019-12-04 10:20:28 -05:00
mpi.scm gnu: openmpi: Increase priority of the PSM component. 2019-11-29 15:54:19 +01:00
mtools.scm
multiprecision.scm
music.scm gnu: muse-sequencer: Don't use NAME in source URI. 2019-12-12 03:02:31 +01:00
musl.scm
nano.scm gnu: nano: Update to 4.6. 2019-11-29 23:53:55 +01:00
ncdu.scm gnu: ncdu: Update to 1.14.1. 2019-12-01 00:49:13 +01:00
ncurses.scm
netpbm.scm
nettle.scm
networking.scm gnu: fmt: Build shared library instead of static. 2019-12-11 22:28:22 +01:00
nfs.scm
nickle.scm
nim.scm
ninja.scm
node.scm
noweb.scm
nss.scm gnu: nss: Fix CVE-2019-11745 via graft. 2019-12-11 01:52:10 -05:00
ntp.scm
nutrition.scm
nvi.scm
ocaml.scm gnu: ocaml-gen: Don't use unstable tarball. 2019-12-04 10:55:29 +02:00
ocr.scm
onc-rpc.scm
openbox.scm
opencl.scm
openldap.scm
openstack.scm
orpheus.scm
ots.scm
package-management.scm
parallel.scm gnu: python-pandas: Move to (gnu packages python-science). 2019-12-04 08:56:36 +01:00
password-utils.scm gnu: yapet: Update to 2.3. 2019-12-01 00:49:16 +01:00
patchutils.scm
pciutils.scm
pcre.scm
pdf.scm Merge branch 'master' into staging 2019-11-28 00:38:25 +01:00
pem.scm
perl-check.scm gnu: perl-test-simple: Update to 1.302169. 2019-11-24 13:32:58 +01:00
perl-compression.scm gnu: perl-archive-extract: Update to 0.82. 2019-11-30 22:14:10 +01:00
perl-web.scm
perl.scm gnu: perl-moose: Update to 2.2012. 2019-11-30 22:14:11 +01:00
perl6.scm
phabricator.scm
photo.scm
php.scm gnu: php: Update to 7.4.0. 2019-11-29 21:58:37 +01:00
pkg-config.scm
plotutils.scm gnu: asymptote: Update to 2.61. 2019-12-01 21:17:37 +01:00
poedit.scm
polkit.scm
popt.scm
pretty-print.scm gnu: Remove fmt-restinio. 2019-12-11 22:49:30 +01:00
printers.scm
profiling.scm
protobuf.scm
pth.scm
pulseaudio.scm
pumpio.scm
pure.scm
pv.scm
python-check.scm
python-compression.scm
python-crypto.scm gnu: python-passlib: Update to 1.7.2. 2019-11-30 22:14:11 +01:00
python-science.scm gnu: python-pandas: Move to (gnu packages python-science). 2019-12-04 08:56:36 +01:00
python-web.scm gnu: Add gunicorn. 2019-12-06 19:38:56 +01:00
python-xyz.scm gnu: python-yapf: Update to 0.29.0. 2019-12-13 07:30:13 -06:00
python.scm
qt.scm gnu: Remove dependency on Python 2 for some Qt packages. 2019-12-01 20:35:06 +01:00
ragel.scm
rails.scm
ratpoison.scm
rdesktop.scm
rdf.scm
re2c.scm
readline.scm
rednotebook.scm
regex.scm gnu: re2: Update to 2019-12-01. 2019-12-11 01:13:24 +01:00
robotics.scm
rrdtool.scm
rsync.scm
ruby.scm gnu: ruby-unicode-display-width: Update to 1.6.0. 2019-12-09 00:35:42 +01:00
rush.scm
rust-cbindgen.scm
rust.scm
sagemath.scm
samba.scm
sawfish.scm
scanner.scm gnu: xsane: Fix snprintf buffer length. 2019-11-22 22:16:32 +01:00
scheme.scm
screen.scm
scribus.scm
scsi.scm
sdcc.scm
sdl.scm Merge branch 'master' into staging 2019-11-28 00:38:25 +01:00
search.scm gnu: python-xapian-bindings: Sphinx is a native input. 2019-11-28 00:33:48 +01:00
security-token.scm gnu: eid-mw: Update to 4.4.23. 2019-12-03 01:52:44 +01:00
selinux.scm
serialization.scm gnu: Remove duplicate nlohmann-json-cpp package. 2019-12-04 20:10:34 +01:00
serveez.scm
shells.scm
shellutils.scm gnu: Add shell-functools. 2019-11-24 09:31:26 +03:00
simh.scm
simulation.scm
skarnet.scm
skribilo.scm
slang.scm
smalltalk.scm
sml.scm gnu: polyml: Use HTTPS home page URI. 2019-11-22 22:53:39 +01:00
speech.scm
sphinx.scm
spice.scm
sqlite.scm
squirrel.scm
ssh.scm gnu: libssh: Update to 0.9.3 [fixes CVE-2019-14889]. 2019-12-11 22:28:22 +01:00
sssd.scm
stalonetray.scm
statistics.scm gnu: r-preprocesscore: Update to 1.48.0. 2019-12-15 15:38:52 +01:00
stb.scm
storage.scm
suckless.scm
swig.scm
sync.scm gnu: rclone: Update to 1.50.2. 2019-11-29 15:04:47 +01:00
syncthing.scm
syndication.scm
synergy.scm
task-management.scm
tbb.scm
tcl.scm
telephony.scm gnu: jami: Fix wrapper. 2019-12-01 13:37:16 +01:00
terminals.scm gnu: python-blessings: Update comment on test suite. 2019-12-13 07:06:39 -06:00
terraform.scm
tex.scm
texinfo.scm
text-editors.scm
textutils.scm
tigervnc.scm
time.scm gnu: datefudge: Update to 1.23. 2019-11-30 22:15:01 +01:00
tls.scm gnu: certbot: Update to 1.0.0. 2019-12-13 06:47:03 -06:00
tmux.scm gnu: tmux: Update to 3.0a. 2019-12-04 08:33:31 -05:00
tor.scm gnu: tor: Update to 0.4.2.5. 2019-12-10 00:29:22 +01:00
toys.scm
tryton.scm
tv.scm
uml.scm
unrtf.scm
upnp.scm
usb-modeswitch.scm
uucp.scm
valgrind.scm
version-control.scm gnu: libgit2: Update to 0.28.4 [security fixes]. 2019-12-11 22:28:21 +01:00
video.scm gnu: libvpx: Do not build static libraries. 2019-12-11 22:28:21 +01:00
vim.scm gnu: Use the test-only Xorg variant for tests. 2019-11-28 00:33:47 +01:00
virtualization.scm gnu: qemu: Build with vde2 support. 2019-12-11 12:13:03 +01:00
vpn.scm gnu: wireguard: Update to 0.0.20191212. 2019-12-12 14:30:24 +01:00
vulkan.scm
w3m.scm
wdiff.scm
web-browsers.scm gnu: Really move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm. 2019-12-05 16:23:06 +01:00
web.scm gnu: Add htmlcxx. 2019-12-14 13:22:54 -06:00
webkit.scm
wget.scm
wicd.scm
wine.scm
wireservice.scm
wm.scm gnu: Add lemonbar. 2019-12-09 23:47:08 -06:00
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm gnu: xlockmore: Update to 5.59. 2019-12-03 01:52:46 +01:00
xfce.scm gnu: exo: Update to 0.12.10. 2019-12-03 01:52:46 +01:00
xfig.scm
xiph.scm gnu: speex: Do not build static libraries. 2019-12-11 22:28:21 +01:00
xml.scm gnu: python-xmltodict: Adjust indentation. 2019-12-10 01:19:43 -06:00
xnee.scm
xorg.scm gnu: xf86-video-intel: Update to 2.99.917-15.f66d395. 2019-12-11 01:13:25 +01:00
zile.scm
zwave.scm