195 lines
7.7 KiB
Scheme
195 lines
7.7 KiB
Scheme
;;; GNU Guix --- Functional package management for GNU
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;;; Copyright © 2017 John Darrington <jmd@gnu.org>
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;;; Copyright © 2017 Ricardo Wurmus <rekado@elephly.net>
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;;; Copyright © 2014 Ludovic Courtès <ludo@gnu.org>
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;;; Copyright © 2014 Mark H Weaver <mhw@netris.org>
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;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org>
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;;;
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;;; This file is part of GNU Guix.
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;;;
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;;; GNU Guix is free software; you can redistribute it and/or modify it
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;;; under the terms of the GNU General Public License as published by
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;;; the Free Software Foundation; either version 3 of the License, or (at
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;;; your option) any later version.
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;;;
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;;; GNU Guix is distributed in the hope that it will be useful, but
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;;; WITHOUT ANY WARRANTY; without even the implied warranty of
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;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;;; GNU General Public License for more details.
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;;;
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;;; You should have received a copy of the GNU General Public License
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;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
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(define-module (gnu packages image-processing)
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#:use-module ((guix licenses) #:prefix license:)
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#:use-module (guix packages)
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#:use-module (guix utils)
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#:use-module (guix download)
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#:use-module (guix build-system cmake)
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#:use-module (guix build-system gnu)
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#:use-module (gnu packages)
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#:use-module (gnu packages algebra)
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#:use-module (gnu packages boost)
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#:use-module (gnu packages compression)
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#:use-module (gnu packages documentation)
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#:use-module (gnu packages fontutils)
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#:use-module (gnu packages gl)
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#:use-module (gnu packages gnome)
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#:use-module (gnu packages graphics)
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#:use-module (gnu packages graphviz)
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#:use-module (gnu packages image)
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#:use-module (gnu packages maths)
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#:use-module (gnu packages perl)
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#:use-module (gnu packages pkg-config)
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#:use-module (gnu packages python)
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#:use-module (gnu packages serialization)
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#:use-module (gnu packages xiph)
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#:use-module (gnu packages xml)
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#:use-module (gnu packages xorg))
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;; We use the latest snapshot of this package because the latest release is
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;; from 2011 and has known vulnerabilities that cannot easily be fixed by
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;; applying patches.
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(define-public dcmtk
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(package
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(name "dcmtk")
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(version "3.6.1_20170228")
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(source (origin
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(method url-fetch)
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(uri (string-append "ftp://dicom.offis.de/pub/dicom/offis/"
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"software/dcmtk/snapshot/dcmtk-"
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version ".tar.gz"))
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(sha256
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(base32
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"04cwfx8yrscqcd59mxk2fh6314ckayi9cp68iql5a57pf2pg5qld"))))
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(build-system gnu-build-system)
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(inputs
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`(("libtiff" ,libtiff)
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("libpng" ,libpng)
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("doxygen" ,doxygen)
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("zlib" ,zlib)))
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(native-inputs
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`(("perl" ,perl)))
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(home-page "http://dcmtk.org")
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(synopsis "Libraries and programs implementing parts of the DICOM standard")
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(description "DCMTK is a collection of libraries and applications
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implementing large parts the DICOM standard. It includes software for
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examining, constructing and converting DICOM image files, handling offline
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media, sending and receiving images over a network connection, as well as
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demonstrative image storage and worklist servers.")
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(license (license:fsf-free
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"file://COPYRIGHT"
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"A union of the Apache 2.0 licence and various non-copyleft
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licences similar to the Modified BSD licence."))))
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(define-public mia
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(package
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(name "mia")
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(version "2.4.4")
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(source (origin
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(method url-fetch)
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(uri (string-append "mirror://sourceforge/mia/mia/"
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(version-major+minor version)
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"/mia-" version ".tar.xz"))
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(sha256
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(base32
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"124gvf8nkls59mlnx8ynq00n9zrah7a54gsywafx7qmfr0y95ra7"))))
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(build-system cmake-build-system)
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(arguments
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`(#:configure-flags
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(list "-DMIA_CREATE_NIPYPE_INTERFACES=0"
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(string-append "-DCMAKE_INSTALL_LIBDIR="
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(assoc-ref %outputs "out") "/lib")
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"-DCMAKE_CXX_FLAGS=-fpermissive")))
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(inputs
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`(("boost" ,boost)
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("dcmtk" ,dcmtk)
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("doxygen" ,doxygen)
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("eigen" ,eigen)
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("fftw" ,fftw)
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("fftwf" ,fftwf)
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("gsl" ,gsl)
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("gts" ,gts)
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("hdf5" ,hdf5)
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("itpp" ,itpp)
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("libjpeg" ,libjpeg)
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("libpng" ,libpng)
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("libtiff" ,libtiff)
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("libxml" ,libxml2)
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("libxml++" ,libxml++)
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("maxflow" ,maxflow)
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("niftilib" ,niftilib)
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("nlopt" ,nlopt)
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("openexr" ,openexr)
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("python-lxml" ,python2-lxml)
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("vtk" ,vtk)))
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(native-inputs
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`(("pkg-config" ,pkg-config)
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("python" ,python-2)))
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(home-page "http://mia.sourceforge.net")
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(synopsis "Toolkit for gray scale medical image analysis")
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(description "MIA provides a combination of command line tools, plug-ins,
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and libraries that make it possible run image processing tasks interactively
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in a command shell and to prototype using the shell's scripting language. It
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is built around a plug-in structure that makes it easy to add functionality
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without compromising the original code base and it makes use of a wide variety
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of external libraries that provide additional functionality.")
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(license license:gpl3+)))
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(define-public vtk
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(package
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(name "vtk")
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(version "7.1.0")
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(source (origin
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(method url-fetch)
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(uri (string-append "http://www.vtk.org/files/release/"
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(version-major+minor version)
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"/VTK-" version ".tar.gz"))
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(sha256
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(base32
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"0yj96z58haan77gzilnqp7xpf8hg5jk11a3jx55p2ksd400s0gjz"))))
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(build-system cmake-build-system)
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(arguments
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'(#:build-type "Release" ;Build without '-g' to save space.
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;; -DVTK_USE_SYSTEM_NETCDF:BOOL=TRUE requires netcdf_cxx
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#:configure-flags '("-DVTK_USE_SYSTEM_EXPAT:BOOL=TRUE"
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"-DVTK_USE_SYSTEM_FREETYPE:BOOL=TRUE"
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"-DVTK_USE_SYSTEM_HDF5:BOOL=TRUE"
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"-DVTK_USE_SYSTEM_JPEG:BOOL=TRUE"
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"-DVTK_USE_SYSTEM_JSONCPP:BOOL=TRUE"
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"-DVTK_USE_SYSTEM_LIBXML2:BOOL=TRUE"
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"-DVTK_USE_SYSTEM_OGGTHEORA:BOOL=TRUE"
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"-DVTK_USE_SYSTEM_PNG:BOOL=TRUE"
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"-DVTK_USE_SYSTEM_TIFF:BOOL=TRUE"
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"-DVTK_USE_SYSTEM_ZLIB:BOOL=TRUE")
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#:tests? #f)) ;XXX: no "test" target
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(inputs
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`(("libXt" ,libxt)
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("xproto" ,xproto)
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("libX11" ,libx11)
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("libxml2" ,libxml2)
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("mesa" ,mesa)
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("glu" ,glu)
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("expat" ,expat)
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("freetype" ,freetype)
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("hdf5" ,hdf5)
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("jpeg" ,libjpeg)
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("jsoncpp" ,jsoncpp)
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("libogg" ,libogg)
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("libtheora" ,libtheora)
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("png" ,libpng)
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("tiff" ,libtiff)
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("zlib" ,zlib)))
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(home-page "http://www.vtk.org/")
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(synopsis "Libraries for 3D computer graphics")
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(description
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"The Visualization Toolkit (VTK) is a C++ library for 3D computer graphics,
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image processing and visualization. It supports a wide variety of
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visualization algorithms including: scalar, vector, tensor, texture, and
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volumetric methods; and advanced modeling techniques such as: implicit
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modeling, polygon reduction, mesh smoothing, cutting, contouring, and Delaunay
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triangulation. VTK has an extensive information visualization framework, has
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a suite of 3D interaction widgets, supports parallel processing, and
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integrates with various databases on GUI toolkits such as Qt and Tk.")
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(license license:bsd-3)))
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