gnu: r-wgcna: Move to (gnu packages bioconductor).
This is a follow-up to commit 6e0ab26f31.
* gnu/packages/cran.scm (r-wgcna): Move from here...
* gnu/packages/bioconductor.scm (r-wgcna): ...to here.
			
			
This commit is contained in:
		
							parent
							
								
									3292f6eda0
								
							
						
					
					
						commit
						3159fcf145
					
				
					 2 changed files with 40 additions and 38 deletions
				
			
		| 
						 | 
					@ -8310,6 +8310,46 @@ generated.")
 | 
				
			||||||
routines.")
 | 
					routines.")
 | 
				
			||||||
    (license license:lgpl2.0+)))
 | 
					    (license license:lgpl2.0+)))
 | 
				
			||||||
 | 
					
 | 
				
			||||||
 | 
					;; This is a CRAN package, but it depends on preprocessorcore, which is a
 | 
				
			||||||
 | 
					;; Bioconductor package.
 | 
				
			||||||
 | 
					(define-public r-wgcna
 | 
				
			||||||
 | 
					  (package
 | 
				
			||||||
 | 
					    (name "r-wgcna")
 | 
				
			||||||
 | 
					    (version "1.69")
 | 
				
			||||||
 | 
					    (source
 | 
				
			||||||
 | 
					     (origin
 | 
				
			||||||
 | 
					       (method url-fetch)
 | 
				
			||||||
 | 
					       (uri (cran-uri "WGCNA" version))
 | 
				
			||||||
 | 
					       (sha256
 | 
				
			||||||
 | 
					        (base32
 | 
				
			||||||
 | 
					         "022hkprnrafvggi8pkjffkvk1qlnibmbbxxrni00wkrdbga5589f"))))
 | 
				
			||||||
 | 
					    (properties `((upstream-name . "WGCNA")))
 | 
				
			||||||
 | 
					    (build-system r-build-system)
 | 
				
			||||||
 | 
					    (propagated-inputs
 | 
				
			||||||
 | 
					     `(("r-annotationdbi" ,r-annotationdbi)
 | 
				
			||||||
 | 
					       ("r-doparallel" ,r-doparallel)
 | 
				
			||||||
 | 
					       ("r-dynamictreecut" ,r-dynamictreecut)
 | 
				
			||||||
 | 
					       ("r-fastcluster" ,r-fastcluster)
 | 
				
			||||||
 | 
					       ("r-foreach" ,r-foreach)
 | 
				
			||||||
 | 
					       ("r-go-db" ,r-go-db)
 | 
				
			||||||
 | 
					       ("r-hmisc" ,r-hmisc)
 | 
				
			||||||
 | 
					       ("r-impute" ,r-impute)
 | 
				
			||||||
 | 
					       ("r-rcpp" ,r-rcpp)
 | 
				
			||||||
 | 
					       ("r-survival" ,r-survival)
 | 
				
			||||||
 | 
					       ("r-matrixstats" ,r-matrixstats)
 | 
				
			||||||
 | 
					       ("r-preprocesscore" ,r-preprocesscore)))
 | 
				
			||||||
 | 
					    (home-page
 | 
				
			||||||
 | 
					     "http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA/")
 | 
				
			||||||
 | 
					    (synopsis "Weighted correlation network analysis")
 | 
				
			||||||
 | 
					    (description
 | 
				
			||||||
 | 
					     "This package provides functions necessary to perform Weighted
 | 
				
			||||||
 | 
					Correlation Network Analysis on high-dimensional data.  It includes functions
 | 
				
			||||||
 | 
					for rudimentary data cleaning, construction and summarization of correlation
 | 
				
			||||||
 | 
					networks, module identification and functions for relating both variables and
 | 
				
			||||||
 | 
					modules to sample traits.  It also includes a number of utility functions for
 | 
				
			||||||
 | 
					data manipulation and visualization.")
 | 
				
			||||||
 | 
					    (license license:gpl2+)))
 | 
				
			||||||
 | 
					
 | 
				
			||||||
(define-public r-rgraphviz
 | 
					(define-public r-rgraphviz
 | 
				
			||||||
  (package
 | 
					  (package
 | 
				
			||||||
    (name "r-rgraphviz")
 | 
					    (name "r-rgraphviz")
 | 
				
			||||||
| 
						 | 
					
 | 
				
			||||||
| 
						 | 
					@ -14477,44 +14477,6 @@ authoring books and technical documents with R Markdown.")
 | 
				
			||||||
that accept short and long options.")
 | 
					that accept short and long options.")
 | 
				
			||||||
    (license license:gpl2+)))
 | 
					    (license license:gpl2+)))
 | 
				
			||||||
 | 
					
 | 
				
			||||||
(define-public r-wgcna
 | 
					 | 
				
			||||||
  (package
 | 
					 | 
				
			||||||
    (name "r-wgcna")
 | 
					 | 
				
			||||||
    (version "1.69")
 | 
					 | 
				
			||||||
    (source
 | 
					 | 
				
			||||||
     (origin
 | 
					 | 
				
			||||||
       (method url-fetch)
 | 
					 | 
				
			||||||
       (uri (cran-uri "WGCNA" version))
 | 
					 | 
				
			||||||
       (sha256
 | 
					 | 
				
			||||||
        (base32
 | 
					 | 
				
			||||||
         "022hkprnrafvggi8pkjffkvk1qlnibmbbxxrni00wkrdbga5589f"))))
 | 
					 | 
				
			||||||
    (properties `((upstream-name . "WGCNA")))
 | 
					 | 
				
			||||||
    (build-system r-build-system)
 | 
					 | 
				
			||||||
    (propagated-inputs
 | 
					 | 
				
			||||||
     `(("r-annotationdbi" ,r-annotationdbi)
 | 
					 | 
				
			||||||
       ("r-doparallel" ,r-doparallel)
 | 
					 | 
				
			||||||
       ("r-dynamictreecut" ,r-dynamictreecut)
 | 
					 | 
				
			||||||
       ("r-fastcluster" ,r-fastcluster)
 | 
					 | 
				
			||||||
       ("r-foreach" ,r-foreach)
 | 
					 | 
				
			||||||
       ("r-go-db" ,r-go-db)
 | 
					 | 
				
			||||||
       ("r-hmisc" ,r-hmisc)
 | 
					 | 
				
			||||||
       ("r-impute" ,r-impute)
 | 
					 | 
				
			||||||
       ("r-rcpp" ,r-rcpp)
 | 
					 | 
				
			||||||
       ("r-survival" ,r-survival)
 | 
					 | 
				
			||||||
       ("r-matrixstats" ,r-matrixstats)
 | 
					 | 
				
			||||||
       ("r-preprocesscore" ,r-preprocesscore)))
 | 
					 | 
				
			||||||
    (home-page
 | 
					 | 
				
			||||||
     "http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/Rpackages/WGCNA/")
 | 
					 | 
				
			||||||
    (synopsis "Weighted correlation network analysis")
 | 
					 | 
				
			||||||
    (description
 | 
					 | 
				
			||||||
     "This package provides functions necessary to perform Weighted
 | 
					 | 
				
			||||||
Correlation Network Analysis on high-dimensional data.  It includes functions
 | 
					 | 
				
			||||||
for rudimentary data cleaning, construction and summarization of correlation
 | 
					 | 
				
			||||||
networks, module identification and functions for relating both variables and
 | 
					 | 
				
			||||||
modules to sample traits.  It also includes a number of utility functions for
 | 
					 | 
				
			||||||
data manipulation and visualization.")
 | 
					 | 
				
			||||||
    (license license:gpl2+)))
 | 
					 | 
				
			||||||
 | 
					 | 
				
			||||||
(define-public r-kernlab
 | 
					(define-public r-kernlab
 | 
				
			||||||
  (package
 | 
					  (package
 | 
				
			||||||
    (name "r-kernlab")
 | 
					    (name "r-kernlab")
 | 
				
			||||||
| 
						 | 
					
 | 
				
			||||||
		Reference in a new issue