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gnu: Add r-arrayqualitymetrics.

* gnu/packages/bioconductor.scm (r-arrayqualitymetrics): New variable.
Ricardo Wurmus 2023-08-28 17:21:36 +02:00
parent 3350e871a8
commit 3886a2b8b5
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@ -3420,6 +3420,44 @@ at @dfn{EBI} (European Bioinformatics Institute) and build Bioconductor data
structures: @code{ExpressionSet}, @code{AffyBatch}, @code{NChannelSet}.")
(license license:artistic2.0)))
(define-public r-arrayqualitymetrics
(package
(name "r-arrayqualitymetrics")
(version "3.56.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "arrayQualityMetrics" version))
(sha256
(base32
"06plgmgla7hvryqfcid4y35s24r50s39d9f8sjchwbxqciwy72wj"))))
(properties `((upstream-name . "arrayQualityMetrics")))
(build-system r-build-system)
(propagated-inputs (list r-affy
r-affyplm
r-beadarray
r-biobase
r-genefilter
r-gridsvg
r-hmisc
r-hwriter
r-lattice
r-latticeextra
r-limma
r-rcolorbrewer
r-setrng
r-svglite
r-vsn
r-xml))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/arrayQualityMetrics")
(synopsis "Quality metrics report for microarray data sets")
(description
"This package generates microarray quality metrics reports for data in
Bioconductor microarray data containers @code{(ExpressionSet},
@code{NChannelSet}, @code{AffyBatch}). One and two color array platforms are
supported.")
(license license:lgpl2.0+)))
(define-public r-asafe
(package
(name "r-asafe")