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gnu: Add r-drimseq.

* gnu/packages/bioconductor.scm (r-drimseq): New variable.
master
Ricardo Wurmus 2021-12-13 10:54:05 +01:00
parent 531a69ecb6
commit 495646aa73
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1 changed files with 35 additions and 0 deletions

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@ -1668,6 +1668,41 @@ spent loading the full derfinder package when running the F-statistics
calculation in parallel.")
(license license:artistic2.0)))
(define-public r-drimseq
(package
(name "r-drimseq")
(version "1.22.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "DRIMSeq" version))
(sha256
(base32 "0y2jb0hb633id038zmwnfny6h4ai77fdyy02f77vha1z8xg5nl02"))))
(properties `((upstream-name . "DRIMSeq")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-edger" ,r-edger)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-iranges" ,r-iranges)
("r-limma" ,r-limma)
("r-mass" ,r-mass)
("r-reshape2" ,r-reshape2)
("r-s4vectors" ,r-s4vectors)))
(native-inputs `(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/DRIMSeq")
(synopsis "Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seq")
(description
"The package provides two frameworks. One for the differential
transcript usage analysis between different conditions and one for the tuQTL
analysis. Both are based on modeling the counts of genomic features (i.e.,
transcripts) with the Dirichlet-multinomial distribution. The package also
makes available functions for visualization and exploration of the data and
results.")
(license license:gpl3+)))
(define-public r-bluster
(package
(name "r-bluster")