gnu: samblaster: Simplify.
* gnu/packages/bioinformatics.scm (samblaster): Fix indentation. [arguments]: Use G-expression; drop trailing #T from 'install phase. [description]: Use double spacing between all sentences.master
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7da3ca1bd7
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6331e41cde
gnu/packages
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@ -17768,31 +17768,30 @@ length of a short-read sequencing alignment.")
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(name "samblaster")
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(name "samblaster")
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(version "0.1.24")
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(version "0.1.24")
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(source (origin
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(source (origin
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(method git-fetch)
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(method git-fetch)
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(uri (git-reference
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(uri (git-reference
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(url "https://github.com/GregoryFaust/samblaster")
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(url "https://github.com/GregoryFaust/samblaster")
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(commit (string-append "v." version))))
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(commit (string-append "v." version))))
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(file-name (git-file-name name version))
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(file-name (git-file-name name version))
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(sha256
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(sha256
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(base32
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(base32
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"0iv2ddfw8363vb2x8gr3p8g88whb6mb9m0pf71i2cqsbv6jghap7"))))
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"0iv2ddfw8363vb2x8gr3p8g88whb6mb9m0pf71i2cqsbv6jghap7"))))
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(build-system gnu-build-system)
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(build-system gnu-build-system)
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(arguments
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(arguments
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`(#:tests? #f ; there are none
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(list
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#:phases
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#:tests? #f ; there are none
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(modify-phases %standard-phases
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#:phases
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(delete 'configure) ; There is no configure phase.
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#~(modify-phases %standard-phases
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(replace 'install
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(delete 'configure) ;There is no configure phase.
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(lambda* (#:key outputs #:allow-other-keys)
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(replace 'install
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(install-file "samblaster"
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(lambda _
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(string-append (assoc-ref outputs "out") "/bin"))
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(install-file "samblaster" (string-append #$output "/bin")))))))
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#t)))))
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(home-page "https://github.com/GregoryFaust/samblaster")
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(home-page "https://github.com/GregoryFaust/samblaster")
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(synopsis "Mark duplicates in paired-end SAM files")
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(synopsis "Mark duplicates in paired-end SAM files")
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(description "Samblaster is a fast and flexible program for marking
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(description "Samblaster is a fast and flexible program for marking
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duplicates in read-id grouped paired-end SAM files. It can also optionally
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duplicates in read-id grouped paired-end SAM files. It can also optionally
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output discordant read pairs and/or split read mappings to separate SAM files,
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output discordant read pairs and/or split read mappings to separate SAM files,
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and/or unmapped/clipped reads to a separate FASTQ file. When marking
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and/or unmapped/clipped reads to a separate FASTQ file. When marking
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duplicates, samblaster will require approximately 20MB of memory per 1M read
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duplicates, samblaster will require approximately 20MB of memory per 1M read
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pairs.")
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pairs.")
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(license license:expat)))
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(license license:expat)))
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