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gnu: samblaster: Simplify.

* gnu/packages/bioinformatics.scm (samblaster): Fix indentation.
[arguments]: Use G-expression; drop trailing #T from 'install phase.
[description]: Use double spacing between all sentences.
master
Ricardo Wurmus 2023-05-12 22:29:38 +02:00
parent 7da3ca1bd7
commit 6331e41cde
No known key found for this signature in database
GPG Key ID: 197A5888235FACAC
1 changed files with 17 additions and 18 deletions
gnu/packages

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@ -17768,31 +17768,30 @@ length of a short-read sequencing alignment.")
(name "samblaster") (name "samblaster")
(version "0.1.24") (version "0.1.24")
(source (origin (source (origin
(method git-fetch) (method git-fetch)
(uri (git-reference (uri (git-reference
(url "https://github.com/GregoryFaust/samblaster") (url "https://github.com/GregoryFaust/samblaster")
(commit (string-append "v." version)))) (commit (string-append "v." version))))
(file-name (git-file-name name version)) (file-name (git-file-name name version))
(sha256 (sha256
(base32 (base32
"0iv2ddfw8363vb2x8gr3p8g88whb6mb9m0pf71i2cqsbv6jghap7")))) "0iv2ddfw8363vb2x8gr3p8g88whb6mb9m0pf71i2cqsbv6jghap7"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(arguments (arguments
`(#:tests? #f ; there are none (list
#:phases #:tests? #f ; there are none
(modify-phases %standard-phases #:phases
(delete 'configure) ; There is no configure phase. #~(modify-phases %standard-phases
(replace 'install (delete 'configure) ;There is no configure phase.
(lambda* (#:key outputs #:allow-other-keys) (replace 'install
(install-file "samblaster" (lambda _
(string-append (assoc-ref outputs "out") "/bin")) (install-file "samblaster" (string-append #$output "/bin")))))))
#t)))))
(home-page "https://github.com/GregoryFaust/samblaster") (home-page "https://github.com/GregoryFaust/samblaster")
(synopsis "Mark duplicates in paired-end SAM files") (synopsis "Mark duplicates in paired-end SAM files")
(description "Samblaster is a fast and flexible program for marking (description "Samblaster is a fast and flexible program for marking
duplicates in read-id grouped paired-end SAM files. It can also optionally duplicates in read-id grouped paired-end SAM files. It can also optionally
output discordant read pairs and/or split read mappings to separate SAM files, output discordant read pairs and/or split read mappings to separate SAM files,
and/or unmapped/clipped reads to a separate FASTQ file. When marking and/or unmapped/clipped reads to a separate FASTQ file. When marking
duplicates, samblaster will require approximately 20MB of memory per 1M read duplicates, samblaster will require approximately 20MB of memory per 1M read
pairs.") pairs.")
(license license:expat))) (license license:expat)))