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gnu: bedtools: Update to 2.29.2.

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* gnu/packages/bioinformatics.scm (bedtools): Update to 2.29.2.
[native-inputs]: Replace python-2 with python-wrapper.
[license]: Change to Expat.
This commit is contained in:
Ricardo Wurmus 2020-02-27 17:37:32 +01:00
parent d24b3b0213
commit 6c32e9b4dc
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GPG key ID: 197A5888235FACAC
1 changed files with 5 additions and 4 deletions
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gnu/packages/bioinformatics.scm
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@ -410,7 +410,7 @@ computational cluster.")
(define-public bedtools (define-public bedtools
(package (package
(name "bedtools") (name "bedtools")
(version "2.27.1") (version "2.29.2")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append "https://github.com/arq5x/bedtools2/releases/" (uri (string-append "https://github.com/arq5x/bedtools2/releases/"
@ -418,7 +418,7 @@ computational cluster.")
"bedtools-" version ".tar.gz")) "bedtools-" version ".tar.gz"))
(sha256 (sha256
(base32 (base32
"1ndg5yknrxl4djx8ddzgk12rrbiidfpmkkg5z3f95jzryfxarhn8")))) "0m3hk6548846w83a9s5drsczvy67n2azx41kj71n03klb2gbzwg3"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(arguments (arguments
'(#:test-target "test" '(#:test-target "test"
@ -427,7 +427,8 @@ computational cluster.")
#:phases #:phases
(modify-phases %standard-phases (modify-phases %standard-phases
(delete 'configure)))) (delete 'configure))))
(native-inputs `(("python" ,python-2))) (native-inputs
`(("python" ,python-wrapper)))
(inputs (inputs
`(("samtools" ,samtools) `(("samtools" ,samtools)
("zlib" ,zlib))) ("zlib" ,zlib)))
@ -440,7 +441,7 @@ genome arithmetic: that is, set theory on the genome. For example, bedtools
allows one to intersect, merge, count, complement, and shuffle genomic allows one to intersect, merge, count, complement, and shuffle genomic
intervals from multiple files in widely-used genomic file formats such as BAM, intervals from multiple files in widely-used genomic file formats such as BAM,
BED, GFF/GTF, VCF.") BED, GFF/GTF, VCF.")
(license license:gpl2))) (license license:expat)))
;; Later releases of bedtools produce files with more columns than ;; Later releases of bedtools produce files with more columns than
;; what Ribotaper expects. ;; what Ribotaper expects.