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gnu: snakemake-5: Make compatible with tabulate 0.9.0.

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* gnu/packages/python-xyz.scm (snakemake-5)[arguments]: Add phase
'tabulate-compatibility.

Change-Id: I0b0ddafe9c2da91dbe10a584eb6fa0a3d5d62e87
This commit is contained in:
Ricardo Wurmus 2024-05-02 21:39:30 +02:00
parent 36a1e76173
commit 8d14b1cbb6
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gnu/packages/python-xyz.scm
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@ -13222,6 +13222,11 @@ approach.")
"--ignore=tests/test_google_lifesciences.py") "--ignore=tests/test_google_lifesciences.py")
#:phases #:phases
#~(modify-phases %standard-phases #~(modify-phases %standard-phases
(add-after 'unpack 'tabulate-compatibility
(lambda _
(substitute* "snakemake/dag.py"
(("\"job\": rule,")
"\"job\": rule.name,"))))
;; For cluster execution Snakemake will call Python. Since there is ;; For cluster execution Snakemake will call Python. Since there is
;; no suitable PYTHONPATH set, cluster execution will fail. We fix ;; no suitable PYTHONPATH set, cluster execution will fail. We fix
;; this by calling the snakemake wrapper instead. ;; this by calling the snakemake wrapper instead.